Rice Gene Index: a comprehensive database for homology, collinearity, and transcripts of genes in rice pangenome.

Variation ID: OglaRS2_MH63RS3_DEL1243550

Variant Type:

Ref Genome:

Query Genome:

Chromosome:

Ref Start:

Ref End:

DEL

Os O.glaberrima: OglaRS2 | OglaRS2

Os XI-adm: Minghui 63 | MH63RS3

Chr12

17767380

17769860

SV Length:

Query Start:

Query End:

Allele sv Count:

2474 bp

5552646

5555119

11

Gene_id	Chromosome	Start	End
OsMH63_12G0088600	Chr12	5551163	5553128
OsMH63_12G0088700	Chr12	5553188	5554259

SV_id	Chromosome	ref_start	ref_end	query_start	query_end	length
OglaRS2_117534_DEL1243910	Chr12	17767380	17769860	7443512	7445987	2476
OglaRS2_Basmati1_DEL1245670	Chr12	17767380	17769860	7640215	7642690	2476
OglaRS2_DG_DEL1243830	Chr12	17767380	17771060	7677188	7682083	4896
OglaRS2_FH838_DEL1242860	Chr12	17767380	17770685	5547011	5551554	4544
OglaRS2_G46_DEL1243850	Chr12	17767380	17771060	7544683	7549579	4897
OglaRS2_R498_DEL1244100	Chr12	17767380	17769860	5564040	5566513	2474
OglaRS2_Tumba_DEL1244470	Chr12	17767380	17771060	7780198	7785093	4896
OglaRS2_YX1_DEL1244380	Chr12	17767380	17771060	8227033	8231928	4896
OglaRS2_ZS97RS3_DEL1243740	Chr12	17767380	17774049	5563250	5573786	10537
OglaRS2_ZS97RS3_DEL1243740_1	Chr12	17767380	17774524	7493600	7504218	10619
OglaRS2_MH63RS3_DEL1243550	Chr12	17767380	17769860	5552646	5555119	2474

>OglaRS2_MH63RS3_DEL1243550
ACTCAAGTAATGGATGCCTTTCTCCTTTGGTTCCGGGTGAAGGTCACCACGTTGTTCCATATGCTTCAGATCATTACGTGCTTCCAGTGTATCTTTCGACTTTCCATATACACCTAGGAAGCCAAGAAGGTTTACGCAAAGGTTCTTAGTGAGGTGCATTACGTCGATTGCGTGGTGGACGTCCAAGAATTCCCAATAGGGTAACTTCCAAAATATGGAGTTTTTTTTCCACATCGCCGCGTGACCATCTTCGCTCTCTATAGGCTGGCTGCCAGGCCCCTTTCCAAACACTACTTTAAGATCTTTAACCATAGCAAACATTGTTTTCCCGCTGCGATGTTTAGGCTTCGTACGGTGGTCCGCCATATGTTCAAAGTGCTTGCCTTTCTTCCGTACTGGGTGGTTTGCTACAAGGAATCGACGATGACCCATGTACACAACCTTCCTACAGTGCTTAAGATACGTACTTTCTGTTTCATCCATACAGCGAGTGCAAGCCTTGTACCCCTTGTTGGACTGCCCGGATAGGTTGTTAAGTGCAGGCTAATCGTTGATGGTTACGAACAGTAGCGCTCGTAGGTTAAACTCCTCCTGTTTGTCCTCATCCCACACGGGGACACCTTCCTTCTTCCACAACAGTTTAAGATCTTCGACCAGTGGTCTTAGGAATACATCGATGTCGTTACCAGGTTGCTTGGGGCCTTGAATAATAATCGGCATCATTATGTACTTCCTCTTCATGCATAGCCAAGGGGGGAGGTTGTAGATACACATCGTAACGGGCCAAGTGCTATGGCCGCTGCTCATCTCTCCAAAAGGATTCATGCCATCCGTACTTAAACCAAACCGTATGTTTCGTGCGTCCTTTCCAAAGTCTTTAAATTTTCTGTCGATGTTTCGCCACTGCGAACCATCTGCGGGGTGTCTCAGCATCCCGTCCTGTTGACGTTCTTCAGCATGCCAACGCATCATTCTAGCATTCCCCTTGTTCCTGAACAAACGCCTTAGCCGTGGTATTATAGGGAAATACCACATCACCTTAGCAGGAATTCTCTTCTTCGTTAGCTGCCCGTCAACCTCACCTGGATCATCTCGTCTAATCTTGTATCGTAGTGCTTTACAAACAGCGCATGCTTCTAGGTTCTCGTACTCCTCACCACGATATAGGATACAATCATTCGGACATGCGTGAATCTTCTGAACTTCCAGTCCTAGAGGGCAGACTATCTTCTTAGCCTCGTACGTTGTCTCGGGCAATTTGTTTCCCTCCGGAAGAATGTTCTTGACGAGTTTCAATAAATCGCCAAATGCCTTGTCACTACCACCATTTTTTGCCTTCCATTGCAAGAACTCCAGAGTGGTATCCAACTTTTTGTGCCCCTGCTCGCAACCTGGGAAAAACGACGTTCTGTGATCCTCTAACATCTTGTCCAATTTATGGGCCCCCTTTTCACTTTCGCAGTCCTCCTTGGCATCCTGCAACATCTGACCAAGATCATCTGCAACGTCGTTATAATCAGCATCTCTATCCTCCTCGCCCGTTTGATTTCCTTCAGATCCAGCGTACTGAGCAAAGTCTAGAATATTGTCGTCTTCCACTTCATCTTTTTCCATTTCAACCCCTTGCTCTCCGTGGGATGTCCAACAATTATAGCTTGGCATGAACCCCGACTCAAACAAGTGGAAATGAATAGTCCTGGATGCAGAATACTCCTTCTGATTCTTACACTTATTGCATGGACAACATTTAAAACCCTTCTGCTTTAGTTTTGGCCACTCTCAAGAAATAATGCACGCCATCAATAAACTCTTCGGACCACCGGTCAGCGTACATCCATTGCGGATCCATCTACATGAAATGAAAAAAAAATCATACACAAATAATCATTCGTACAATAATGGTAGTTATACAATAATGATAAAATAATCACAAACTCTTTCAACAGTCATACAATAATGACATATCATTATTCATACAAAAATTATAAAATATTCCACCAAATAATTCTTATTTATTATTTTTTAAGTTTTAAATTCTTTTAATTTTCAATTTAGTTTGTTTTCTTTTATTTAAGATTAACTTTCACTATATTTTCCTACTCAACTATTTTATAAAACCTTATTTAGAAAATAAACAAAATTTCTATATATTCTTTCTTTTCCCACACAAATTTTCTCTCTCATCAACTTACAACAAAATTTTGAGACAAAAAAGTGTGCAAAACATAGCTCCAAATGTAATATGACCAAAAAAAAACATTGGAGGATGAAGTTGCTAACCTTTTAGGCAGCTTCGATTTGTATATAATCACCAAAGTAAATTCACTATAAATTTTGGCATGACCTCCCTTCTTTTTTGAAGAAATTTTGAAGCTTGCTCGGGCTGGAGGAGAAAGAAGACATATATAAAGGGGTGGGACTTTAGTCCCGGTTGGTGTTACCAACCGGTACTAAAGATCACCGGGAACTTTAGT