Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsZS97_08G0088000 | OGI:08014680 | 1/16 | Zhenshan 97 | ZS97RS3 | HZAU | Chr08:5654058-5656365 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTACTGAGTTGCAGCTGGAGTATCTTCCTTGGAAATAGATAGGTCACCAAGTTCTAAAATAATAGATGATCTCAGTTAGAACAGTCAATAGTGTATGAATCATGAAGCACATTAGAATTTGGAAGGAAATAAAAATTTTCTATGTTACCTTCCTCAAGCAAAGCCATTTGTTCGCTGTCCTCTTCAACACTAACATAGTTTCCTCCACGAAGCCAATCATTAGCACAAACAAGACGCTCAACCATTCTTGGGGTTAGTGAGGTCCTAAAGTCATCTAGAGTTCGCCCACCAGCACTGAAGGCTGATTCAGAGGCAACTGAGGTGATAGGAATTGCCAAAAGATCACGGGCCAAATGAGATAATATTAGGAATCTTGTTGAATTGGCCTTCCACCACTTTAGAATGTCAAATTTTGGTGTGTCCAGCTCATTATCTTCTGATAGATACTTGTCTACCTCAGATTTGATAGTTCCACTTCCACCCTCACTGTTAAGTTGTTGAGTAATTACTGACATCCACCTACAACTCACTCTTTTGCTGGTTTCAGCTGTAGATTCAGATTCAGTAGGTTGTGGTGCCTTATCTTTTGGGGTATACATTTCCTTGTACTCTTCAAACAAAGCACGAAAATAGGTATTCACTGTTTCCCATACTTTTTCTCCTACTGTATCCCCAAACATCACCTTAATTCCCATTCTAATGCAATTTGATAGTTTGTATCTAGGATCAATAGCAACACAGAAGAAGACAGTGAAGTTGAGTAGTTGATCCCCCTTATCTTTCTCTCCTCTCTTCTCTCTGTCCCCCTGCCTCTCACCATACTTCTCTCCCCAATACTTGTAGTACTTCATTAGCATTCTTGTACCCATTTCCTTGCTCAACTTGTCTTCACTATGAGACCATTTTCTCAACAGAAGTAATACATCAGCAATCTCATGGAAATAAGTGTGAGATGTTGTACGACTTTGTACAGAAACACGGAGAGTGAGGTCATAAAAGTGTTCAAGAAAATCAGCCATCTTCCTAGCCTTCTCCCAATCTGCTCTTGTTGGTACCCCTGGACCATTCTCTCCTTCTAATTCTAATTTGTAGTATGGGTCTTCATCACTATATCTTTCAAATGCTTTTTGGTACTTCTCTGCAGCATTTAACATAAGATAGGTTGAGTTCCATCTAGTGCAAATATCTAAGTTTAGAAATGCTTTGCTCTGTACCTTGGCTAACTCAGCACATATCTTAAATTTTACCAACCTAGATGTTCCACATCTGATAAACTTAACAGCAGCACGGACACGTTGAATTGATGTACCAATTTCCTTCAAGCCATCACCTACTATTAGGTTGATAATATGAGCAGCACAGCGCATATGAATGTACTCTCCTTCAGCAACACAACCTTTTGACTCATTCAAGACCCTTCTCATATACTTAATTGCATTATTGTTTGCACTACATTGTCTACTGTTATTGTAAAAACCTTGTCAATGCCCCACTCAGCCAAGCAGTTCTCTAATGATTTTCCAATGTCCTCCCCTCTATGTCCCTTAACCAAAAAAAAACCAATAATATTCTTCTGTAGGTTCCACTCATTGTCAATGAAATGGGCTGTAACACACATGAAGTTTTGGCTGTTCTTAGCAGTCCATGTATCAGTTGTGAGGCAAACTCTTACACAATTGTCCTTAAAAAATTTCTTAAGCTTTTCTTTCTCATCTTCATATACTTTAACACAAGCTCTAGTGATTGTTCTTCTAGATGGCAGAACAAATTGTGGACATGCTAAAGTCATAAATTTCCTAAGACCAGAACGCTCAGATAGGACAAATGGTTGTTCATCTTCAATTATCATCTCAGCAAAACACCTTCTAAGTTTATCTGGATCAAATTTCCAAGTGGTCACAGTACCAAGAGTACTATTGCCATCACATGGTGTCAGTTGCAAAGTTCCTTGATTATCAACTACTGGTTTGTTAGGATTCTTTTTGCAAATCTTCAGATGAGCTTTCAAGGATGACGTACCATTTGTTCTTGAGCCGCAATGAAATAGCTTGGTACACCACTTGCACTTGGCCCTCTCGTCCCCATTAGCAAGTTTGACCTTGCTGAAACTTTCCCATACATCAGATCTTAGAGCCATTGGTTTTCTTTTTCTGGATTCTTCATCAGCTTTCTCTCCATCCTTGGACTGCTGCTGCTCCTCCTTGTCCTTGCTTGCATCTACCACTCCAGTAGTTGACACTCCGGTTTCAGTGTCTTGAGATTGAGTGTGATTAATCTCACAAGCAACAGTTTCATCTGTGTCCCCCAT
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| CDS seq | ATGGGGGACACAGATGAAACTGTTGCTTGTGAGATTAATCACACTCAATCTCAAGACACTGAAACCGGAGTGTCAACTACTGGAGTGGTAGATGCAAGCAAGGACAAGGAGGAGCAGCAGCAGTCCAAGGATGGAGAGAAAGCTGATGAAGAATCCAGAAAAAGAAAACCAATGGCTCTAAGATCTGATGTATGGGAAAGTTTCAGCAAGGTCAAACTTGCTAATGGGGACGAGAGGGCCAAGTGCAAGTGGTGTACCAAGCTATTTCATTGCGGCTCAAGAACAAATGGTACGTCATCCTTGAAAGCTCATCTGAAGATTTGCAAAAAGAATCCTAACAAACCAGTAGTTGATAATCAAGGAACTTTGCAACTGACACCATGTGATGGCAATAGTACTCTTGGTACTGTGACCACTTGGAAATTTGATCCAGATAAACTTAGAAGGTGTTTTGCTGAGATGATAATTGAAGATGAACAACCATTTGTCCTATCTGAGCGTTCTGGTCTTAGGAAATTTATGACTTTAGCATGTCCACAATTTGTTCTGCCATCTAGAAGAACAATCACTAGAGCTTGTGTTAAAGTATATGAAGATGAGAAAGAAAAGCTTAAGAAATTTTTTAAGGACAATTGTGTAAGAGTTTGCCTCACAACTGATACATGGACTGCTAAGAACAGCCAAAACTTCATGTGTGTTACAGCCCATTTCATTGACAATGAGTGGAACCTACAGAAGAATATTATTGGTTTTTTTTTGGTTAAGGGACATAGAGGGGAGGACATTGGAAAATCATTAGAGAACTGCTTGGCTGAGTGGGGCATTGACAAGTATATGAGAAGGGTCTTGAATGAGTCAAAAGGTTGTGTTGCTGAAGGAGAGTACATTCATATGCGCTGTGCTGCTCATATTATCAACCTAATAGTAGGTGATGGCTTGAAGGAAATTGGTACATCAATTCAACGTGTCCGTGCTGCTGTTAAGTTTATCAGATGTGGAACATCTAGGTTGGTAAAATTTAAGATATGTGCTGAGTTAGCCAAGGTACAGAGCAAAGCATTTCTAAACTTAGATATTTGCACTAGATGGAACTCAACCTATCTTATGTTAAATGCTGCAGAGAAGTACCAAAAAGCATTTGAAAGATATAGTGATGAAGACCCATACTACAAATTAGAATTAGAAGGAGAGAATGGTCCAGGGGTACCAACAAGAGCAGATTGGGAGAAGGCTAGGAAGATGGCTGATTTTCTTGAACACTTTTATGACCTCACTCTCCGTGTTTCTGTACAAAGTCGTACAACATCTCACACTTATTTCCATGAGATTGCTGATGTATTACTTCTGTTGAGAAAATGGTCTCATAGTGAAGACAAGTTGAGCAAGGAAATGGGTACAAGAATGCTAATGAAGTACTACAAGTATTGGGGAGAGAAGTATGGTGAGAGGCAGGGGGACAGAGAGAAGAGAGGAGAGAAAGATAAGGGGGATCAACTACTCAACTTCACTGTCTTCTTCTGTGTTGCTATTGATCCTAGATACAAACTATCAAATTGCATTAGAATGGGAATTAAGGTGATGTTTGGGGATACAGTAGGAGAAAAAGTATGGGAAACAGTGAATACCTATTTTCGTGCTTTGTTTGAAGAGTACAAGGAAATGTATACCCCAAAAGATAAGGCACCACAACCTACTGAATCTGAATCTACAGCTGAAACCAGCAAAAGAGTGAGTTGTAGGTGGATGTCAGTAATTACTCAACAACTTAACAGTGAGGGTGGAAGTGGAACTATCAAATCTGAGGTAGACAAGTATCTATCAGAAGATAATGAGCTGGACACACCAAAATTTGACATTCTAAAGTGGTGGAAGGCCAATTCAACAAGATTCCTAATATTATCTCATTTGGCCCGTGATCTTTTGGCAATTCCTATCACCTCAGTTGCCTCTGAATCAGCCTTCAGTGCTGGTGGGCGAACTCTAGATGACTTTAGGACCTCACTAACCCCAAGAATGGTTGAGCGTCTTGTTTGTGCTAATGATTGGCTTCGTGGAGGAAACTATGTTAGTGTTGAAGAGGACAGCGAACAAATGGCTTTGCTTGAGGAAGAACTTGGTGACCTATCTATTTCCAAGGAAGATACTCCAGCTGCAACTCAGTAA
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| Protein seq | MGDTDETVACEINHTQSQDTETGVSTTGVVDASKDKEEQQQSKDGEKADEESRKRKPMALRSDVWESFSKVKLANGDERAKCKWCTKLFHCGSRTNGTSSLKAHLKICKKNPNKPVVDNQGTLQLTPCDGNSTLGTVTTWKFDPDKLRRCFAEMIIEDEQPFVLSERSGLRKFMTLACPQFVLPSRRTITRACVKVYEDEKEKLKKFFKDNCVRVCLTTDTWTAKNSQNFMCVTAHFIDNEWNLQKNIIGFFLVKGHRGEDIGKSLENCLAEWGIDKYMRRVLNESKGCVAEGEYIHMRCAAHIINLIVGDGLKEIGTSIQRVRAAVKFIRCGTSRLVKFKICAELAKVQSKAFLNLDICTRWNSTYLMLNAAEKYQKAFERYSDEDPYYKLELEGENGPGVPTRADWEKARKMADFLEHFYDLTLRVSVQSRTTSHTYFHEIADVLLLLRKWSHSEDKLSKEMGTRMLMKYYKYWGEKYGERQGDREKRGEKDKGDQLLNFTVFFCVAIDPRYKLSNCIRMGIKVMFGDTVGEKVWETVNTYFRALFEEYKEMYTPKDKAPQPTESESTAETSKRVSCRWMSVITQQLNSEGGSGTIKSEVDKYLSEDNELDTPKFDILKWWKANSTRFLILSHLARDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 2 [UniProtKB/Swiss-Prot:Q6AVI0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsZS97_08G0088000 | OsZS97_08T0088000.1 | Chr08 | 5654058 | 5656365 | - | makerRMon | ||
| CDS seq | ATGGGGGACACAGATGAAACTGTTGCTTGTGAGATTAATCACACTCAATCTCAAGACACTGAAACCGGAGTGTCAACTACTGGAGTGGTAGATGCAAGCAAGGACAAGGAGGAGCAGCAGCAGTCCAAGGATGGAGAGAAAGCTGATGAAGAATCCAGAAAAAGAAAACCAATGGCTCTAAGATCTGATGTATGGGAAAGTTTCAGCAAGGTCAAACTTGCTAATGGGGACGAGAGGGCCAAGTGCAAGTGGTGTACCAAGCTATTTCATTGCGGCTCAAGAACAAATGGTACGTCATCCTTGAAAGCTCATCTGAAGATTTGCAAAAAGAATCCTAACAAACCAGTAGTTGATAATCAAGGAACTTTGCAACTGACACCATGTGATGGCAATAGTACTCTTGGTACTGTGACCACTTGGAAATTTGATCCAGATAAACTTAGAAGGTGTTTTGCTGAGATGATAATTGAAGATGAACAACCATTTGTCCTATCTGAGCGTTCTGGTCTTAGGAAATTTATGACTTTAGCATGTCCACAATTTGTTCTGCCATCTAGAAGAACAATCACTAGAGCTTGTGTTAAAGTATATGAAGATGAGAAAGAAAAGCTTAAGAAATTTTTTAAGGACAATTGTGTAAGAGTTTGCCTCACAACTGATACATGGACTGCTAAGAACAGCCAAAACTTCATGTGTGTTACAGCCCATTTCATTGACAATGAGTGGAACCTACAGAAGAATATTATTGGTTTTTTTTTGGTTAAGGGACATAGAGGGGAGGACATTGGAAAATCATTAGAGAACTGCTTGGCTGAGTGGGGCATTGACAAGTATATGAGAAGGGTCTTGAATGAGTCAAAAGGTTGTGTTGCTGAAGGAGAGTACATTCATATGCGCTGTGCTGCTCATATTATCAACCTAATAGTAGGTGATGGCTTGAAGGAAATTGGTACATCAATTCAACGTGTCCGTGCTGCTGTTAAGTTTATCAGATGTGGAACATCTAGGTTGGTAAAATTTAAGATATGTGCTGAGTTAGCCAAGGTACAGAGCAAAGCATTTCTAAACTTAGATATTTGCACTAGATGGAACTCAACCTATCTTATGTTAAATGCTGCAGAGAAGTACCAAAAAGCATTTGAAAGATATAGTGATGAAGACCCATACTACAAATTAGAATTAGAAGGAGAGAATGGTCCAGGGGTACCAACAAGAGCAGATTGGGAGAAGGCTAGGAAGATGGCTGATTTTCTTGAACACTTTTATGACCTCACTCTCCGTGTTTCTGTACAAAGTCGTACAACATCTCACACTTATTTCCATGAGATTGCTGATGTATTACTTCTGTTGAGAAAATGGTCTCATAGTGAAGACAAGTTGAGCAAGGAAATGGGTACAAGAATGCTAATGAAGTACTACAAGTATTGGGGAGAGAAGTATGGTGAGAGGCAGGGGGACAGAGAGAAGAGAGGAGAGAAAGATAAGGGGGATCAACTACTCAACTTCACTGTCTTCTTCTGTGTTGCTATTGATCCTAGATACAAACTATCAAATTGCATTAGAATGGGAATTAAGGTGATGTTTGGGGATACAGTAGGAGAAAAAGTATGGGAAACAGTGAATACCTATTTTCGTGCTTTGTTTGAAGAGTACAAGGAAATGTATACCCCAAAAGATAAGGCACCACAACCTACTGAATCTGAATCTACAGCTGAAACCAGCAAAAGAGTGAGTTGTAGGTGGATGTCAGTAATTACTCAACAACTTAACAGTGAGGGTGGAAGTGGAACTATCAAATCTGAGGTAGACAAGTATCTATCAGAAGATAATGAGCTGGACACACCAAAATTTGACATTCTAAAGTGGTGGAAGGCCAATTCAACAAGATTCCTAATATTATCTCATTTGGCCCGTGATCTTTTGGCAATTCCTATCACCTCAGTTGCCTCTGAATCAGCCTTCAGTGCTGGTGGGCGAACTCTAGATGACTTTAGGACCTCACTAACCCCAAGAATGGTTGAGCGTCTTGTTTGTGCTAATGATTGGCTTCGTGGAGGAAACTATGTTAGTGTTGAAGAGGACAGCGAACAAATGGCTTTGCTTGAGGAAGAACTTGGTGACCTATCTATTTCCAAGGAAGATACTCCAGCTGCAACTCAGTAA
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| Protein seq | MGDTDETVACEINHTQSQDTETGVSTTGVVDASKDKEEQQQSKDGEKADEESRKRKPMALRSDVWESFSKVKLANGDERAKCKWCTKLFHCGSRTNGTSSLKAHLKICKKNPNKPVVDNQGTLQLTPCDGNSTLGTVTTWKFDPDKLRRCFAEMIIEDEQPFVLSERSGLRKFMTLACPQFVLPSRRTITRACVKVYEDEKEKLKKFFKDNCVRVCLTTDTWTAKNSQNFMCVTAHFIDNEWNLQKNIIGFFLVKGHRGEDIGKSLENCLAEWGIDKYMRRVLNESKGCVAEGEYIHMRCAAHIINLIVGDGLKEIGTSIQRVRAAVKFIRCGTSRLVKFKICAELAKVQSKAFLNLDICTRWNSTYLMLNAAEKYQKAFERYSDEDPYYKLELEGENGPGVPTRADWEKARKMADFLEHFYDLTLRVSVQSRTTSHTYFHEIADVLLLLRKWSHSEDKLSKEMGTRMLMKYYKYWGEKYGERQGDREKRGEKDKGDQLLNFTVFFCVAIDPRYKLSNCIRMGIKVMFGDTVGEKVWETVNTYFRALFEEYKEMYTPKDKAPQPTESESTAETSKRVSCRWMSVITQQLNSEGGSGTIKSEVDKYLSEDNELDTPKFDILKWWKANSTRFLILSHLARDLLAIPITSVASESAFSAGGRTLDDFRTSLTPRMVERLVCANDWLRGGNYVSVEEDSEQMALLEEELGDLSISKEDTPAATQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0198000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09800 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006400 | SBH | 0.110099 | 4.927837 | 1.164720 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006280 | SBH | 0.0 | 0.000000 | 0.300688 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006440 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0005500 | SBH | 0.361978 | 0.342623 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006200 | SBH | 5.622628 | 3.278532 | 3.197437 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0070300 | SBH | 8.2809065 | 8.927504 | 12.165233 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006080 | SBH | 0.0 | 0.092984 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006000 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006040 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0006030 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006230 | SBH | 0.0 | 0.768632 | 0.295667 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006070 | SBH | 0.0 | 2.270802 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006070 | SBH | 0.122131 | 1.589484 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005140 | SBH | 0.947337 | 7.223179 | 6.845451 |
