Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0006000 | OGI:08003760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:5282722-5291407 | ||||||||
| Gene Symbol | WRKY105, OsWRKY105, WRKY106, OsWRKY106 | ||||||||||
| DNA seq | tcataggactatttcagcttccaccattttcatcacctgtctctgttaaccaacagtcaagaaacatcacagttacagtcagcaatacaaaataataggttcactacatgttgaatgatttgaagtataaagctgtactgtacctgaagattttatccaatcctgagtgcagatgagggcttccactatctcgggactcatcttttcattgaaaagtctcaccctttcatcagttttgttaaaagcatattcagcagaaaccgcacttccaggtattgctaaaatgtcgcgtgcaagcctagcaagagttggatacgtcgacgcattatccttccaccatttcaggatatcaaattgatcattttgaggacaaagttccccctcaatgtacgaagttagttctctgaattctccatatgctccttgcccaatgttattctgatcggtgccatgtaatgaatcattaccgtgtctatccatctgtaaattattgctcctgtgattaagtagctcaccgctttgctgattaacattacaggagtattgaagaaagagctcaaaaatctttccacgcacttcgaggatgcacattttggcaccactacggaaagcttgtgtaaagcaatgatcaagatacctcaatttgaacctgggatctagaaaaacagccaaagacaaccacacgtagcattttctccaaagcttatcatattttttcttcatatcatcaacatcaatgatgcacttaatgtttggctttctggatgattccccaagagctgttcccaccctccaaagtgcatgaaaatgtgagttggaagtcacgttttgtcttgaaagcatatcaactgcatggtaaattggccttacaagatcacagaaattttttattgcttctagtctttgaggagatggtttttgtggatacatttccaaatccatctcttcagggtttggcaatgctttgttaaactgcaaagcagcctcaaataagtagaaagtcaagtgccattgctgcgaaccaaaagagggtcggattgggtgcagccccgacagaatttccttgtatttttccagacgaagttcagagcatgtcatgtactcaaaccattccttaattgttttcttgacAaattgtccaagatcataaccaaacaagccatggagcgcatctatcatacaaggcacagctaataacttgtgtttagccaaaagataattctgtactgctcctgccatgctctcatccaagtccaatataacgtcattacccaagttactccgcaatgcaattcttaaaagcttatgctcaagattccaatcttggactgcttctttgacttttattacagcaaaatcagtttcctcactatcgtagtatgacgaatcttttgcattaaagtaggatttccagttggccataataccgaggtaataatcagcatcataagtgtattgaccatagtcataactaatgatttttctattcatcttccactcattgtcgataaaatgtactatgatacagatgaagtatttgcattcaacagaccactttgttattgacaggaaaattcctccaggtgtaactgctattttgtcttttagcttcatcttttccttctgaaatatgctgagaaacttttcttcaatagtagcctgtggcaccatattataagtaggacagttaccaatcaaaaattgcctaaaatttacattgcttgtcactgaaaacgggcaaaggttggagattaaagccctggcaagcaattctagagatgtttctggatcaaatttcctattatttgcagcagatgaatcaagtcttgaagatgacccttgttgctgcagcctagaggttttAtattgtgcaggacatatcttcagatgtcgccgcagatggcttgttcctccagaagtttttccacttaggcattttctgcaatgtttacattctgcactttgaacttttccaccactgaacacagcagtaaagtcctcccataccttggacttggatcttcttttttcactggcatcagagatcacttatcaaaaatagaaggtaaaaacatggaagccattccattaagaaggaaggggagtttcttagactacaaacagagaaagttccaatgctttcaggccaaaaaaaggaagagaaaaggcagaactgaaacTttttttttcgcgaacgcgcaaaaggattgcacgtcaatatattattagaagaatagagttttgatacacgatgcactcaaccagaccggcctatgccaaggaaggaagaaaacaaagataaaaaacaaaggaaaggaaaaaaactcgaaacgacggtaactctactccaaacagcGggagggggcagagccactctacgctcctaacaattccccaaaggaagcgacggccgctaatgaccacagccggccctctgaaaggatggactctaggactactgcgaccgaagagagcacagagtcaaagaccctggagttacgttccctccacagttgccatgagactagGAggactagggagtcgaagctggcacggagatgatcaggtaaacaggccctagaagatggccaccaatcctgcagccagctgccacggaggggagagagggcagcccagccaggacacgacaacacccgtaaccagacctgacgagcgaacacgcagtcgaggaggatgtggttcgccgtctcaagctcttgagcgcaaaaggggcaggccgagtggctatcaatgccgcgcttctggaggagatcagccgtccaacagagctgctgaaatgcaaaccagaggaagaatttgcacttagcagggcccttcgcgtgccaaagaagatcggcacaagcaaaggagtgctggccaaagaagaatgcctggtacgccgaacgcgccgagtagcgctagtcactcgtccaatgccagacaagacgatccccgacacctggcgtaagctgaatgtggagcaccgcatcccaaacaaggagaaactgggagatgaccgggacagtgagggcgtcgtggatgtcagaaatccaggcgttgtttgccaggctagaagcaaccgtgcacgaaccacgcagacgcgggggcacagcgaagaggagatccggagccaaggaagctaccgagcggccgcagatccattggtcagactagaaaagaatcgactcaccatcacctggcacgaagaaggtggacgcctcaaacatgtcagagacggctcgctcggctggggccttcaggccatcccagtagggatgccctgaacgctggagccaaagccagcaaacacacagggataaacctgccaacctaacgtcaagaattcccaacccaccgaaagctctaggacgacagacgttcgtccaagaaacccggcactacccaccgtgagccaagtctgtgcccgtccacaagaaggcgcggcacttcttgtcaatggccttgatcacccaggctggaaggccgatcgccatagacacatggaccggaatggaggagagaatagactggaccaaaacagagcggccggccagagtggtgagtcgtcccttctagggagaaagacgatgggagaccttatccacaagcggctgcagggccgccttcagcaacttgcgaacagatagtggaatgcggagataggaacaaggaaaatcaggatcgagcagggaaagcaggactgaaccagctcgaggtcctcagccaaactgtggatcggagtaaccgaacacttggcaaagttagtgtgaagcccgggcgctgcaccaaagacagagaggatgccctggatgaactcaagatcctgacgaaccggggagaggaagagaaccaagtcattagcatatagggaggcgttgtgtcgcaaggcatgattgttgagcggaaggaacccgcccgagtcagagactttgcggagcatcgcgttaagcacatccatgaccagaatgaagagcatgggagagaggggatctccttgccgaaggcctctccagtgagggaatcgaggacccggcaccccattgatcagcacccgggaagaggaggcgccaaggatgagagaaatccaatcacgccagcgctgactgaaccctagatgggcgagcacctcaagcaagaacggccagctgaccgtgtcaaaggccttggcgatatccaccttaagaaggaggcggggggagcgcctggcatggagagccctagccgcgagctgcacatagcggaagttatcgtgaagggatcggcctttgacgaaagcactctgattggccgccacaagcccgtcgaggtgagGAgagagacgagaggccaggatcttggagaacaacttcccaaagctgtggatgaggctaatcggtcggaaatccttaacgtcaatggccttgtccttcttgggcagaagggagatgagggcgccattgaGggaggagaaccctcgaccgttagtcagaaagaaggagttaagagccgccaggacctccgccttgatcaccgaccagcaagtcttgtagaatcgacccgtgaacccatcaggaccaggtgccttgtcagaaggtaaggccttgaccactgcccatacctcctcctccgagaaaggatcgtctagccccacaatatccgaagggcagagacccgcgagtggaagtcaagggcaagatcgcgctcaactgacgtccccatgatagcgccaaaatgagaagaagcgagctcttgaagctcatcatgggagacggcaagttggtccccatctcgaagacgtgtgatgaagttcttccgccttcgggctctagcatgcaggtggaaaaacttggtgttagcatcaccctccttgagccaaatcagacgagaacgctggcGggcgatggtacgctcaagcgaggcaagaccaaggcacttcatcttcaagtcccgctgcaaacaggtctccaaggggtagagagaccggcgctcttgtgcgacatccaaccggaagacgagctccttagccatctgcagctggaggcggacgctgccgatctgacggtcactccagctctgcaggcgcttagccgtgttagcgaaacaccaagccagtgcggggagagggggaaggttggctggaggatgccaggcgtcctgcaccacttcgagaaagccatcaaacttgggccagatggcctcaaaccgaaagcggtgtgctctcggtgaatcaatgcaggaatgaaggaggagagcacaatgatccgaggcgacagagaaggccgcttgaaggaggcaagaGggaaagagctcttcccaatccgcggagaagaaaacgtggtcaagcttgacgagcgtaggagagtcacgctcgttactccaggtgaagcaacgaccgtggagcggcaattcccggaggtccaactcatcaatcaatcgacggaagcggcccatcatacggcgattgagattcaagttgttcttatcctaggcgtcgaggatgaggttgaaatcaccagcaactgcccacggacctgagcgagaggaccgcaacatccggagctcatctaggaaccgaagcttctccgactcctcctgcggcccgtagacaacggagagccaccaaggggcatcatccgagctgtgccgaaccagtgcggtaagagagaaatccacgaggtgaacattcgagacagaccaaacgcatgtccgccaggcaagcAacacacccccaaaccgacccacagcaggcaagaaagaataatcaaagtcaaggcctagcatttccagaatagtacgggaagggattacatccatcttggtctcctcgagacagagaagagagacccgctcatcacgaactacatcacgaaccgcatcccggcgcgtgcgcgagttcagaccccgcacgttccacaccaaaatattctcattacatgatcccatagagaaagagaccgagaccacgcagagaaGgggagggcgggaggagtcagccgcaggcaggcaacatctccgctccctgtgctggaggcaacgagttggagaagagtgcggagagggcgatgatgcgatcatgacagaggggctcgttgaagagggcgtcgaagtccgccaacgcctgcgccgggaccagaccctcctcaggcgccaacccaagcttgcgtatcaggttgcgctgcgcgcgagtgaccgtgtggcacaggccggcaagcgcgatctgggccgcaatccgcttgctgcgcttgggcaccacccccacgggcccggcagcctgaggcggaggtagaggcgggcaggcggcggaaggagcgcaggaggaagaggcctagaacagctggcgaggaaggcgcgaagggcggcgttggccgcaaccgaagccggcagcgagtgagccatcggccgaccatcgaggtcgagaacaacaagcggcacatcgtagagaacgccgttgggcacctcgtcaaccaccgtcgcaaccgacagcacaggagaggccggagtcggccgcggaggcgacgaccgcagcacaggcagcgaccggcgcgcggagagagacggcgagccggtaggccgcagctgtgaagcgctcacaccgagaggggacgtctccgcggccagggcatctagctgatcgaagaagaagtcgggaccgacacccggggaagctgccagcagcggcacggctggaacctcccggacggccggccgggaagaggaagccgagccagcagcgctagctgatggcccctacgcggatgggggacgccggctagcaatttagcagccccagcccaacggaccggggaggcgaggcaggcgacgctgagccaacgacggccggcagggagacggctgccaaagaacccacgtcggcgagcgagcccgaggaggtcggcgagcgcgacggcgagttgagggcgaccgcagcggccggaGgggggccgacggcggccgcggcgaccggcgaggcgacggtggtccccgaggcggagccagagccagcaggcgccggcgagctgagcgtgacgcggccggtgaagaggcgacaggcgacgagccgaaggcgtcagcggcggccggcgaacccggcgagcgagtcgcggccggcgaagcgacggaggcggccaccgaggcgaagacgacgccggccggcgaacccgcagcaaccggcgagctcggcgagctcacgacggccgtatcgtccaacgagcccacggcggccggcaagaactgaaactagccagtgaggcagtgacagaagaccAaaaaagagagagtgcggatctgcggctcactaaactaaccaattatctatataaagagttccaattttagttttcagatgaataacttgcttaacatcccaaagactgtaaggaaagaatgtaatattttgctcgatctatgaacttcaatattcaaataggaaacaacatttattgagacaaatatgtgattcaaacgcagggaataaacacaataaattattcaggtaaatcactgaaccagaataccagattgttcacaagccctataacaaaattaattatcaaaaatctcaattagacattctctttaagaggtgtcacatatggtatgcatacttctcaggttgctatcttcaattggaaactttcaagcagacagactacagtaataaagcaaatcctgatagctattggtatgatagtttatcagtgcaaatagattggttaattcactagtagatagtaaaagataatgtatctcatgCcatcactacattatttgataaacacttctgggcaaaaatttttattgccgggcttgataaacacttccgtttatgcccaagagtgaaagtacaaaaaaaaaaagaaagaaaaaaagatagtcatagagagcaggtgtattcacaattgtcactgggattaccttcggtgataattcttgcgctgctgacagccgttacccaaaacatcaacctcagttgtgttttccgcagtgatctcttgagctgcagctgcagggacatgtctgtccaccaaattaaattaaattatcctcatgtacgcactgaagtactgaaccttgcaaaattcataatgcgtaagtaccaaaagttcagttaaatcgagcaccttatttcattggcgtcaccagcagcaccatcgccatcagctcttgcttcactgtcatcatcttcctcgctgtcactcgaaccagattgtagctcatcttcctcctcattcctaggcattgcaactaaaggcctgataacccctgctgcctgtaatatctcaccaacagggattgcatccagtgtagctgaaccatatcctccaaaccacctatctgatgagcgtggatggttgtgactgcccttacatactgttttcttgatctgtccatctgcagagcgcgtcacggatttctcggcaccgcagtttgcttgagaacattcatagtagaatttctgatggcacccaccctgaactaatttctgcccacatatcctccagttgtagccatcatattcagttgggttgggatatatgccaccataatctgtgtgagatggcagagctggcatctgcattactgctggtgctgggttggaataacaaccggcattctgctgctgcatattaagttgttctgttagccagctgcgaaatctttgatcggccatgccgtcctgagcttgacctgactgattattctccat
More
|
||||||||||
| CDS seq | atggagaataatcagtcaggtcaagctcaggacggcatggccgatcaaagatttcgcagctggctaacagaacaacttaatatgcagcagcagaatgccggttgttattccaacccagcaccagcagtaatgcagatgccagctctgccatctcacacagattatggtggcatatatcccaacccaactgaatatgatggctacaactggaggatatgtgggcagaaattagttcagggtgggtgccatcagaaattctactatgaatgttctcaagcaaactgcggtgccgagaaatccgtgacgcgctctgcagatggacagatcaagaaaacagtatgtaagggcagtcacaaccatccacgctcatcagataggtggtttggaggatatggttcagctacactggatgcaatccctgttggtgagatattacaggcagcaggggttatcaggcctttagttgcaatgcctaggaatgaggaggaagatgagctacaatctggttcgagtgacagcgaggaagatgatgacagtgaagcaagagctgatggcgatggtgctgctggtgacgccaatgaaataagacatgtccctgcagctgcagctcaagagatcactgcggaaaacacaactgaggttgatgttttgggtaacggctgtcagcagcgcaagaattatcaccgaagtgaaaaaagaagatccaagtccaaggtatgggaggactttactgctgtgttcagtggtggaaaagttcaaagtgcagaatgtaaacattgcagaaaatgcctaagtggaaaaacttctggaggaacaagccatctgcggcgacatctgaagatatgtcctgcacaataTaaaacctctaggctgcagcaacaagggtcatcttcaagacttgattcatctgctgcaaataataggaaatttgatccagaaacatctctagaattgcttgccagggctttaatctccaacctttgcccgttttcagtgacaagcaatgtaaattttaggcaatttttgattgtcaaagaagcagtccaagattggaatcttgagcataagcttttaagaattgcattgcggagtaacttgggtaatgacgttatattggacttggatgagagcatggcaggagcagtacagaattatcttttggctaaacacaagttattagctgtgccttgtatgatagatgcgctccatggcttgtttggttatgatcttggacaattTgtcaagaaaacaattaaggaatggtttgagtacatgacatgctctgaacttcgtctggaaaaatacaaggaaattctgtcggggctgcacccaatccgaccctcttttggttcgcagcaatggcacttgactttctacttatttgaggctgctttgcagtttaacaaagcattgccaaaccctgaagagatggatttggaaatgtatccacaaaaaccatctcctcaaagactagaagcaataaaaaatttctgtgatcttagacaggtgatgaaaatggtggaagctgaaatagtcctatga
More
|
||||||||||
| Protein seq | MENNQSGQAQDGMADQRFRSWLTEQLNMQQQNAGCYSNPAPAVMQMPALPSHTDYGGIYPNPTEYDGYNWRICGQKLVQGGCHQKFYYECSQANCGAEKSVTRSADGQIKKTVCKGSHNHPRSSDRWFGGYGSATLDAIPVGEILQAAGVIRPLVAMPRNEEEDELQSGSSDSEEDDDSEARADGDGAAGDANEIRHVPAAAAQEITAENTTEVDVLGNGCQQRKNYHRSEKRRSKSKVWEDFTAVFSGGKVQSAECKHCRKCLSGKTSGGTSHLRRHLKICPAQYKTSRLQQQGSSSRLDSSAANNRKFDPETSLELLARALISNLCPFSVTSNVNFRQFLIVKEAVQDWNLEHKLLRIALRSNLGNDVILDLDESMAGAVQNYLLAKHKLLAVPCMIDALHGLFGYDLGQFVKKTIKEWFEYMTCSELRLEKYKEILSGLHPIRPSFGSQQWHLTFYLFEAALQFNKALPNPEEMDLEMYPQKPSPQRLEAIKNFCDLRQVMKMVEAEIVL |
||||||||||
| Function | WRKY transcription factor WRKY24 [UniProtKB/Swiss-Prot:Q6IEQ7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0006000 | OsLima_08g0006000.01 | Chr08 | 5282722 | 5291407 | - | NAM | ||
| CDS seq | atggagaataatcagtcaggtcaagctcaggacggcatggccgatcaaagatttcgcagctggctaacagaacaacttaatatgcagcagcagaatgccggttgttattccaacccagcaccagcagtaatgcagatgccagctctgccatctcacacagattatggtggcatatatcccaacccaactgaatatgatggctacaactggaggatatgtgggcagaaattagttcagggtgggtgccatcagaaattctactatgaatgttctcaagcaaactgcggtgccgagaaatccgtgacgcgctctgcagatggacagatcaagaaaacagtatgtaagggcagtcacaaccatccacgctcatcagataggtggtttggaggatatggttcagctacactggatgcaatccctgttggtgagatattacaggcagcaggggttatcaggcctttagttgcaatgcctaggaatgaggaggaagatgagctacaatctggttcgagtgacagcgaggaagatgatgacagtgaagcaagagctgatggcgatggtgctgctggtgacgccaatgaaataagacatgtccctgcagctgcagctcaagagatcactgcggaaaacacaactgaggttgatgttttgggtaacggctgtcagcagcgcaagaattatcaccgaagtgaaaaaagaagatccaagtccaaggtatgggaggactttactgctgtgttcagtggtggaaaagttcaaagtgcagaatgtaaacattgcagaaaatgcctaagtggaaaaacttctggaggaacaagccatctgcggcgacatctgaagatatgtcctgcacaataTaaaacctctaggctgcagcaacaagggtcatcttcaagacttgattcatctgctgcaaataataggaaatttgatccagaaacatctctagaattgcttgccagggctttaatctccaacctttgcccgttttcagtgacaagcaatgtaaattttaggcaatttttgattgtcaaagaagcagtccaagattggaatcttgagcataagcttttaagaattgcattgcggagtaacttgggtaatgacgttatattggacttggatgagagcatggcaggagcagtacagaattatcttttggctaaacacaagttattagctgtgccttgtatgatagatgcgctccatggcttgtttggttatgatcttggacaattTgtcaagaaaacaattaaggaatggtttgagtacatgacatgctctgaacttcgtctggaaaaatacaaggaaattctgtcggggctgcacccaatccgaccctcttttggttcgcagcaatggcacttgactttctacttatttgaggctgctttgcagtttaacaaagcattgccaaaccctgaagagatggatttggaaatgtatccacaaaaaccatctcctcaaagactagaagcaataaaaaatttctgtgatcttagacaggtgatgaaaatggtggaagctgaaatagtcctatga
More
|
|||||||
| Protein seq | MENNQSGQAQDGMADQRFRSWLTEQLNMQQQNAGCYSNPAPAVMQMPALPSHTDYGGIYPNPTEYDGYNWRICGQKLVQGGCHQKFYYECSQANCGAEKSVTRSADGQIKKTVCKGSHNHPRSSDRWFGGYGSATLDAIPVGEILQAAGVIRPLVAMPRNEEEDELQSGSSDSEEDDDSEARADGDGAAGDANEIRHVPAAAAQEITAENTTEVDVLGNGCQQRKNYHRSEKRRSKSKVWEDFTAVFSGGKVQSAECKHCRKCLSGKTSGGTSHLRRHLKICPAQYKTSRLQQQGSSSRLDSSAANNRKFDPETSLELLARALISNLCPFSVTSNVNFRQFLIVKEAVQDWNLEHKLLRIALRSNLGNDVILDLDESMAGAVQNYLLAKHKLLAVPCMIDALHGLFGYDLGQFVKKTIKEWFEYMTCSELRLEKYKEILSGLHPIRPSFGSQQWHLTFYLFEAALQFNKALPNPEEMDLEMYPQKPSPQRLEAIKNFCDLRQVMKMVEAEIVL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0198100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g09810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0198100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0006400 | SBH | 0.110099 | 4.927837 | 1.164720 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0006320 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0006380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0006340 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0006160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0086300 | RBH | 0 | 0.0283495 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0006080 | SBH | 0.0 | 0.092984 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0089800 | RBH | 0 | 0.0051255 | 0.1480185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0006060 | SBH | 0.0 | 0.026050 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0006050 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0005950 | RBH | 0.0 | 5.792423 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0006230 | SBH | 0.0 | 0.768632 | 0.295667 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0006080 | SBH | 0.000000 | 3.649435 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G006080 | SBH | 0.103327 | 0.370052 | 0.702606 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0005920 | RBH | 0.0 | 0.0 | 0.0 |
