Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_12g0014640 | OGI:12053590 | 3/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr12:18868936-18874216 | ||||||||
| Gene Symbol | GNP12 | ||||||||||
| DNA seq | gtccattgttctgttcgtttcagtaacatggatattcttgagcctaggagatcgcctaggagaaatcaggttagtctttttgcaagcagcaccagcaccaggcattgttactttcaagtagcagactacagattcaaacttgtatcaaaatcaacttggcaattgtaaatgtcaaaaagtttcctgtagcaatgaagaaaaccaggtgttatgaccaaatgcatgcacaatagatgaataacagaagccatattacctttaggatgaaccatattctttttctagatgaaacagggtcatattcaattaaagcacttgagcaggataataggcaaatcatgtcattacgaaatcataatattgaaccaataaagatcactagtgcattatccaaaataaagtactccatttctgtttactctgtttacagcaaaacagtatcccatttctgtctactctgaatctgtatctcaagttccaatttttgtttccaatttctcattataacatccaaaattcccacgcatattacatcactgacagtactaagcactaatcatctgatcaaatacacaacaatcagtccccagtgaacacgaccagaatttcccagaaacagaaaaatttccccttcgatgaacatcaaatagccaagcaaatgcaatgtgcattctctaaaaaacgaacatcaacaatcaacatacggctaaccaaatcagacaatctgcaggccgttcagtagcttaatctgcaatcaagtgcacagctatcttaaccggatgaaataatcaggtaaattctggacatccagctgaagaaagaaaaaagaaaggaggagacttgtggcaatggagcttttcgaagcccggcgatctcctgcaccaacgagacgtgcaccagcaccatcctccacgccatgtatcagcctgcgaacccgccgccgccgcgagcagcgaacgaaagaatcagggaaaagccctcgagccaaagccgaatcgagaggaggagagggcagccgtactgagggcgatgatggagaggacgaaggcgaaggcgaggagcggccggaggacggaagacgacggcgatctcccacgccgccgccgccagcgtggctcctcctccggccatggtgcaggggcggcgcttcgtcggcggaaggggactatgcgcgtgggaggcggcgccagacttgagcgccatgcgtggagggcctcgccgtggcaggggcaggaggaccgctggcggaggagctcctcctgcttctccgcgccgccgactgaggggtaaagatggaaacggtatcggccggtgtactacgacgtcaaacattttgactctttttgaaatgagctacagcgacaaacaaaacgaaacggagggagtattaaacgttgagtgggaggcttggtggacctagcattatataatggctagtacatgaaaaaaaaggttgttgattaggggaagaaatcagcttagtacctgagttagttcatcatcatcgattgtattttgagcgctgcttgattaggatagtccttaagtgcctcttcaataacagccttgctgtcatcatcaaaggaataaatggttgcatgccgaagggagtagagattctccaaacctaaatcatttaagccacccctccttagtctggtccaaatagaaagataaagcctttcaaggtggggcatagctcctggttgaaacgatggcatcatggagctataaaactgaaaatcttttaaactccgaaatgcacatgcacctctgtggatagtgagcttttcctgtagttattccgAaacaaatgctaactgtagcctgagaaagcgaagagatggaagctcagcgaggcgatcaaggtggtcagactggagatattcgaaatccagacaaatggataaggtggtgaggcgggagagcatcaatgaattgatccaacatgggaatgctttcataaacgaatcgggcatgaacaacctttggagaccggaaggaacctgttgcatgtctatgatttcttcaaaactaatattatttctcaaatctaggtcttgcaaattggtgagcctttgtatagacgtttgaatggattcctttaactcaaatgttttttcactaccgaaaacgatcctaagagtccttagctctgtcaaattaccaatctcttttattacctttcgggtagcttctattacaagctcctgtaaagatttcatatcccccagcatcagaccttgcgccagcttcactctgccagcatatagccgcaacagtttccttagtttggcaaaagacattggaaacagtaccttatgagatttaaaagaacttggtttacgtgcacctcttatgtccaaggtttcgagagattccagtttcccaatgctttcagggagctcagtggcactatagtgccctagacgcagaaatcttaggaggcgtagcttatcgagatgattaagatggttcttgtccattccactgcagtcctcaagctgcaacacacgcaggacatgaaagctcgacaagggtggtatcgagtcgaccttgccgaagatagtaatggaccttactttggacaattgttctcttgcttctggtgaggcataggatttattgctgttatggagagataatcggcgaatcttcttcttttgtgctgtacatgtatgtttacctgtttgttgaccatctgataaatacgttgtaacaaaatcttcttctactgacagctgatttattagctcaagcaccatgtcatgtactttgcatgcatgcaccttaccatcttcatcccAaaaaacatgcaccttaccatcttcatcccaaaaattgtcctcactcatcggctggatcaagcttcgattgatgagctcgttgaagtagctctctccaatctcctgcaagcttgtccctacaggtcgtgtttcatctgtaataaaaccctcagctaaccaaccccatatcaaaacatcttttctaattagttcatcctcaggatatttgcttagagacaacaagcaagtcttcaaatgaaaaggtagatcgttgtaactaaggcttaatatcttccgcatcttgtccacatcaaggttgttctcaagccccaaactgatagacttattgaccttgtcccattcctctgaattccttggtttgctagcaagtaggcatgctgtagtgatgattgctagcggtacaccaccacatttcttcaaaattttctcagtgacaccacacaaatcagcaggacagtcatcgttagagtcaaatattcgtttgcagaacaattgtctggaatcatcatcagataagggtttcatttcataaacaccactgcctgcatgttctgcaacgaccttgtttcgcgtggttacaattgttttgctaccaagtttagcatcttgcacagcaagtttgatagtatcccacgctgattttttccatacatcatcaatcacgcacaagaacctaaagatggtagcatatacacatgttattgaacctagatataaatcatgtgaagcctgtccaaaaaagataggaatatgtatcttgcacattgaatatcgaaaatgatgtgcagctttaaatgtgtaattatccaacaattttgacacaataagtgcagctttgtgaatttctattcacaaagttacaaagatacttaattatgcgtaaatagggcagatttctgaataactatgtgttccattggaaaaccaaaactttatttacaagccagttatattataatagtataaaaacttgagctaggattcccggttatattagaatacaataaaaacttgagccaggactcttattcgtacaacaaaaggtatcttcaaataatgataaaaggtaggtataacatagaaatgtaccttctattgttgaggaagtctctaattttgtcgatgagctgcttcgtttcccatgtttcatctatgtgggaatacattttctcatcaagttggagaagaatgttcttgagaatcttgtttatatcaggattcaaggacaccgaaacaaaacaatagctgtcaaattttgccttaagctcctgaaataatgaattggcaagagttgtctttcctaagcctccgaatccaacaatagaaattatatttgattgttggctggatgagccgtcatattccaagagttgcttagttagctcattttttggcttgctaatgccaatgagttctgtcgcctttcggtacatagcttctaggcgagaatcaacatccacaacagttggcctggcagcattgtcgtcgactatgtacctatcacgacgttcgctgaccttcttgacctggtccatgatgtctttcatgacaccgtggatctgatggttggttttgaacttgttgaacaaattggtgaccttcttgaagctcgtggcaggttcatgccccttgcactttaacatgaaggtgtcgatggcatcctcgatgtcgtaagatagctctctcacctcgctggcccagatcttgacctgctggtcaagttgatccacaggtgtctcagccaccttgtggagtgctgcggtcatacctttcaactctttctcaagttcttcgatctctcccttgacacccttttgcagcttgtattcgccaaccagcagctccccaagcttggggaggagggtgttcattgcccctgtggcgatgttcatcttggcctatctgatgttgaatgcctgcacgggtacacacagatgcacttaaatgagcctcttgagtttattagtatgtatcaggattcaggaatgatcaagcaaccgcaaaaacatggagaaaaacgacatctgaataattaagctgctatgtagcatgtcaaatcgagactagattgaggtaacaaccgtgtgctgcatcacctaatcgatccaagcaaagctcatcaccgtgagcagcgcaagatagcgacctctcaacgctgtacggtatactagtaacaggaaggaccaagcaacgacgcccaaacacacatggagaaaatcagcatctggatcaactgggccgtaccggaatcggaggtcgatcgggacagtggatgcggtcgcgccgtcgctggctccgctccgctccgccccgcccttgctgcgccgcgaatcgggtccgccgccactcagccacgtcgcccgcgatcgatcgatgccgtggtggaagcggccggcggcgagagtaggggagctcgggtcaacgggtgggagacctggagtcaagtttgctccagccgaagaggatagaataat
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| CDS seq | atgaacatcgccacaggggcaatgaacaccctcctccccaagcttggggagctgctggttggcgaatacaagctgcaaaagggtgtcaagggagagatcgaagaacttgagaaagagttgaaaggtatgaccgcagcactccacaaggtggctgagacacctgtggatcaacttgaccagcaggtcaagatctgggccagcgaggtgagagagctatcttacgacatcgaggatgccatcgacaccttcatgttaaagtgcaaggggcatgaacctgccacgagcttcaagaaggtcaccaatttgttcaacaagttcaaaaccaaccatcagatccacggtgtcatgaaagacatcatggaccaggtcaagaaggtcagcgaacgtcgtgataggtacatagtcgacgacaatgctgccaggccaactgttgtggatgttgattctcgcctagaagctatgtaccgaaaggcgacagaactcattggcattagcaagccaaaaaatgagctaactaagcaactcttggaatatgacggctcatccagccaacaatcaaatataatttctattgttggattcggaggcttaggaaagacaactcttgccaattcattatttcaggagcttaaggcaaaatttgacagctattgttttgtttcggtgtccttgaatcctgatataaacaagattctcaagaacattcttctccaacttgatgagaaaatgtattcccacatagatgaaacatgggaaacgaagcagctcatcgacaaaattagagacttcctcaacaatagaaggttcttgtgcgtgattgatgatgtatggaaaaaatcagcgtgggatactatcaaacttgctgtgcaagatgctaaacttggtagcaaaacaattgtaaccacgcgaaacaaggtcgttgcagaacatgcaggcagtggtgtttatgaaatgaaacccttatctgatgatgattccagacaattgttctgcaaacgaatatttgactctaacgatgactgtcctgctgatttgtgtggtgtcactgagaaaattttgaagaaatgtggtggtgtaccgctagcaatcatcactacagcatgcctacttgctagcaaaccaaggaattcagaggaatgggacaaggtcaataagtctatcagtttggggcttgagaacaaccttgatgtggacaagatgcggaagatattaagccttagttacaacgatctaccttttcatttgaagacttgcttgttgtctctaagcaaatatcctgaggatgaactaattagaaaagatgttttgatatggggttggttagctgagggttttattacagatgaaacacgacctgtagggacaagcttgcaggagattggagagagctacttcaacgagctcatcaatcgaagcttgatccagccgatgagtgaggacaatttttgggatgaagatggtaaggtgcatgtttttTgggatgaagatggtaaggtgcatgcatgcaaagtacatgacatggtgcttgagctaataaatcagctgtcagtagaagaagattttgttacaacgtatttatcagatggtcaacaaacaggtaaacatacatgtacagcacaaaagaagaagattcgccgattatctctccataacagcaataaatcctatgcctcaccagaagcaagagaacaattgtccaaagtaaggtccattactatcttcggcaaggtcgactcgataccacccttgtcgagctttcatgtcctgcgtgtgttgcagcttgaggactgcagtggaatggacaagaaccatcttaatcatctcgataagctacgcctcctaagatttctgcgtctagggcactatagtgccactgagctccctgaaagcattgggaaactggaatctctcgaaaccttggacataagaggtgcacgtaaaccaagttcttttaaatctcataaggtactgtttccaatgtcttttgccaaactaaggaaactgttgcggctatatgctggcagagtgaagctggcgcaaggtctgatgctgggggatatgaaatctttacaggagcttgtaatagaagctacccgaaaggtaataaaagagattggtaatttgacagagctaaggactcttaggatcgttttcggtagtgaaaaaacatttgagttaaaggaatccattcaaacgtctatacaaaggctcaccaatttgcaagacctagatttgagaaataatattagttttgaagaaatcatagacatgcaacaggttccttccggtctccaaaggttgttcatgcccgattcgtttatgaaagcattcccatgttggatcaattcattgatgctctcccgcctcaccaccttatccatttgtctggatttcgaatatctccagtctgaccaccttgatcgcctcgctgagcttccatctcttcgctttctcaggctacagttagcatttgttTcggaataa
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELKGMTAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYRKATELIGISKPKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKTIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDKMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRPVGTSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGDMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSRLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSE |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_12g0014640 | OsPr106_12g0014640.01 | Chr12 | 18868936 | 18874216 | - | NAM | ||
| CDS seq | atgaacatcgccacaggggcaatgaacaccctcctccccaagcttggggagctgctggttggcgaatacaagctgcaaaagggtgtcaagggagagatcgaagaacttgagaaagagttgaaaggtatgaccgcagcactccacaaggtggctgagacacctgtggatcaacttgaccagcaggtcaagatctgggccagcgaggtgagagagctatcttacgacatcgaggatgccatcgacaccttcatgttaaagtgcaaggggcatgaacctgccacgagcttcaagaaggtcaccaatttgttcaacaagttcaaaaccaaccatcagatccacggtgtcatgaaagacatcatggaccaggtcaagaaggtcagcgaacgtcgtgataggtacatagtcgacgacaatgctgccaggccaactgttgtggatgttgattctcgcctagaagctatgtaccgaaaggcgacagaactcattggcattagcaagccaaaaaatgagctaactaagcaactcttggaatatgacggctcatccagccaacaatcaaatataatttctattgttggattcggaggcttaggaaagacaactcttgccaattcattatttcaggagcttaaggcaaaatttgacagctattgttttgtttcggtgtccttgaatcctgatataaacaagattctcaagaacattcttctccaacttgatgagaaaatgtattcccacatagatgaaacatgggaaacgaagcagctcatcgacaaaattagagacttcctcaacaatagaaggttcttgtgcgtgattgatgatgtatggaaaaaatcagcgtgggatactatcaaacttgctgtgcaagatgctaaacttggtagcaaaacaattgtaaccacgcgaaacaaggtcgttgcagaacatgcaggcagtggtgtttatgaaatgaaacccttatctgatgatgattccagacaattgttctgcaaacgaatatttgactctaacgatgactgtcctgctgatttgtgtggtgtcactgagaaaattttgaagaaatgtggtggtgtaccgctagcaatcatcactacagcatgcctacttgctagcaaaccaaggaattcagaggaatgggacaaggtcaataagtctatcagtttggggcttgagaacaaccttgatgtggacaagatgcggaagatattaagccttagttacaacgatctaccttttcatttgaagacttgcttgttgtctctaagcaaatatcctgaggatgaactaattagaaaagatgttttgatatggggttggttagctgagggttttattacagatgaaacacgacctgtagggacaagcttgcaggagattggagagagctacttcaacgagctcatcaatcgaagcttgatccagccgatgagtgaggacaatttttgggatgaagatggtaaggtgcatgtttttTgggatgaagatggtaaggtgcatgcatgcaaagtacatgacatggtgcttgagctaataaatcagctgtcagtagaagaagattttgttacaacgtatttatcagatggtcaacaaacaggtaaacatacatgtacagcacaaaagaagaagattcgccgattatctctccataacagcaataaatcctatgcctcaccagaagcaagagaacaattgtccaaagtaaggtccattactatcttcggcaaggtcgactcgataccacccttgtcgagctttcatgtcctgcgtgtgttgcagcttgaggactgcagtggaatggacaagaaccatcttaatcatctcgataagctacgcctcctaagatttctgcgtctagggcactatagtgccactgagctccctgaaagcattgggaaactggaatctctcgaaaccttggacataagaggtgcacgtaaaccaagttcttttaaatctcataaggtactgtttccaatgtcttttgccaaactaaggaaactgttgcggctatatgctggcagagtgaagctggcgcaaggtctgatgctgggggatatgaaatctttacaggagcttgtaatagaagctacccgaaaggtaataaaagagattggtaatttgacagagctaaggactcttaggatcgttttcggtagtgaaaaaacatttgagttaaaggaatccattcaaacgtctatacaaaggctcaccaatttgcaagacctagatttgagaaataatattagttttgaagaaatcatagacatgcaacaggttccttccggtctccaaaggttgttcatgcccgattcgtttatgaaagcattcccatgttggatcaattcattgatgctctcccgcctcaccaccttatccatttgtctggatttcgaatatctccagtctgaccaccttgatcgcctcgctgagcttccatctcttcgctttctcaggctacagttagcatttgttTcggaataa
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| Protein seq | MNIATGAMNTLLPKLGELLVGEYKLQKGVKGEIEELEKELKGMTAALHKVAETPVDQLDQQVKIWASEVRELSYDIEDAIDTFMLKCKGHEPATSFKKVTNLFNKFKTNHQIHGVMKDIMDQVKKVSERRDRYIVDDNAARPTVVDVDSRLEAMYRKATELIGISKPKNELTKQLLEYDGSSSQQSNIISIVGFGGLGKTTLANSLFQELKAKFDSYCFVSVSLNPDINKILKNILLQLDEKMYSHIDETWETKQLIDKIRDFLNNRRFLCVIDDVWKKSAWDTIKLAVQDAKLGSKTIVTTRNKVVAEHAGSGVYEMKPLSDDDSRQLFCKRIFDSNDDCPADLCGVTEKILKKCGGVPLAIITTACLLASKPRNSEEWDKVNKSISLGLENNLDVDKMRKILSLSYNDLPFHLKTCLLSLSKYPEDELIRKDVLIWGWLAEGFITDETRPVGTSLQEIGESYFNELINRSLIQPMSEDNFWDEDGKVHVFWDEDGKVHACKVHDMVLELINQLSVEEDFVTTYLSDGQQTGKHTCTAQKKKIRRLSLHNSNKSYASPEAREQLSKVRSITIFGKVDSIPPLSSFHVLRVLQLEDCSGMDKNHLNHLDKLRLLRFLRLGHYSATELPESIGKLESLETLDIRGARKPSSFKSHKVLFPMSFAKLRKLLRLYAGRVKLAQGLMLGDMKSLQELVIEATRKVIKEIGNLTELRTLRIVFGSEKTFELKESIQTSIQRLTNLQDLDLRNNISFEEIIDMQQVPSGLQRLFMPDSFMKAFPCWINSLMLSRLTTLSICLDFEYLQSDHLDRLAELPSLRFLRLQLAFVSE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 15.126895 | 4.928723 | 13.624816 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0516300 | RBH | 4.147744 | 3.464825 | 3.641097 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g33160 | RBH | 2.397618 | 2.326673 | 0.935796 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0516300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0016870 | RBH | 0.728661 | 12.296240 | 2.813406 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017000 | RBH | 0.076143 | 5.623502 | 1.953492 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015310 | RBH | 4.879800 | 8.909056 | 12.071543 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0016680 | RBH | 0.184661 | 0.512904 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014260 | RBH | 0.214109 | 0.0 | 1.570528 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0234500 | SBH | 0 | 0 | 0.333826 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016120 | SBH | 0.0 | 0.251442 | 0.047281 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0300700 | RBH | 10.2455155 | 11.7344715 | 12.761187 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0016360 | SBH | 0.0 | 0.309585 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0016580 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006110 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0016560 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0016760 | RBH | 0.572579 | 2.792268 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G008830 | SBH | 0.336031 | 0.323068 | 0.415770 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0016220 | RBH | 1.765418 | 4.101892 | 4.229546 |
