Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsMH63_12G0234500 | OGI:12046300 | 11/16 | Minghui 63 | MH63RS3 | HZAU | Chr12:16157487-16160221 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CTAAAGACGAGGCAAGCTTTCACCACGCTGATGCAGCCGATCCCCAAAATAAATGACGGATCGGACTTGATGTAAAGACTCACTTGCTTGGATCAAGTTACCACGGTTTGATTGGTAGCTGAGCCGGCGAATCAAAAAATTATGTCGTCTTGAGCAATCTTGATCAGTCCTAATTACAGTCACAAAGTTTTCCTCCGTGGACTTCTCAACAATAAGATCAAGAAACAAATTGTGCACAACACGACAGGAGACAACCTCACCATGCTTAAACTGAGCTGGCTTTATCAGGCTTCTATTTATGAGGTCACTGAAGTAGCTCTCAGCAATATCTTCTAGGTCTCGGTTATCTTTTTGGGTAATAAATCCTTCAGCTATCCATTGTCTCATCAAGTCTTTCTTCATGATGTTATAGTTTTCAGGATACATATGAAGATATAGAAAGCACGTCTTCAGATCCAAAGATAAATTATTGTAGCTAAGTTTAAGTATATGCTTCATCCATTTAGAGTTAGGATTTCTTTCCAGTTCAAACCCCATAGAGTATTTTATCTTCAACCTTATTAACTTCTTCTTGACTAGCCAAAAGACTAGCTATGACAACTACAGCCAACGGAACTCCTCCACATTTCTTTAAAATATCAATAGCAATTATGAGTTCTTCAAGTTCAGGGCTGTAGTTATCTGACCCATATATTCTTCTGAAAAATAAGCTTCTGGAGTCCGTCCAACCTAGTGGTTTCATCTTATAGACAATGCCATGGAAGCTAGAGCAGCAGGCATTAGCTACATCCTTTCTTCGTGTAGTTGTAATAATTCTGCTTCCGCTGTTCCATGTTTCGACAAACGCACCACTAATACTGTTCCATGTTTCTATGCTTGCTATGTCATCGATTACAACTAGGAACCTGAGAAAAAACATAGCAATAATCAATAGCGGAAAACCATAGATATCTATAGAAAACCATATCGAGCTATTTTTGGTTATAAACCATATAGTTAACTTCTAGCCTTTAGACTCATTAGTATATCTATATCTACACCAATACACCAATCCTGGGCATTATATTGTCCAGATAATACACTGTTAAAATTTCTATCAAGTCTACATGCAGATAGAAACGGCGACTGAATGCAGCAAGGGTATAGAACATGCGCTGCGACAGAAAATATTAGTACAGATTCGTAACGCCCATTGCAAATGGTTCTCGGTTATGAGAGTTGAGCATATTCAGCAGTATGGTCAACTGGTCAAGGTGATATTGTTATTTAACATCTTACTAGAAAATCGCCGCGCCTATTGGCGCGCCTGATTTGTTCGCCCACATACGTTTATAAAAAAATATAATGTAATTAATAATATTTTATTCTAATTTTTGATGTTACCAAATGGTAAATGTAGTGTTTATGTGAAGATTTATAATAGCATATGTTCAATATTACTCCTTTTCGTTAATCTTTTTTCTAAATTAATCTTATAACTTATAGAAAAATATACCAATATCTATAATAATAAATAAATGCACTATGAAGACATATTTCATGATGAATCTAATTCAATTAGTTTGGTGTTGTCAGCCAAAGCTATAAAAGTTTAACTTAAGATAAATTTAAATAGTTTACAATACGAACATAGGGAGTTAGTGAAAATCTGTTTTATTTTATAAAAGGAACATGAAACGCTAACAACTTTTTCTATGTATATTGTTTAGGCTGCATTTATCTTTTATATATCCTTGTGTGCTTAATTTTTTCTGAAACACCAAATATGGTCAAATCTGCTATTGGATTCCGTGACTTCATGGTTTAGCTTTAGCGTAAAAGTAAATATTTAGAGAAACACACTATTAAAATGTGGCTCCTTGGTACTGCATATCGTCCCCCTATTTTATTAGTTTGAGTGTTGGACGGAGAGAGAAAGAACACGGGAAAGATATGAAATGCTCCTGAGTATTCTAATTAGGCCAAATGGCATGCTGACTGGTTAATCAGTACATGCATATATGTAGCGATCAAGGTGGGTATGTAGTAACACTGTGCATGCGGCTGTCCTAAATACATCAAATTAATCGACCAGTGATAATTATAATTAACTTAATATTGTCGACAATTGATTCTTCATCTAGATTTTCTTTTAGATCTAATTAAATGATTGTAAGTTATAGCAAAATCTGTGAGTGTGGTATTGCGTATATAGTGATGTGTACATGTGTGCCTCTACCCTGTAATCTAAAAAAATATTATATTGACGTTGTTTTGGGACAGCACGCCCGATCTACCTAGTCGGCTAGTCACTTGGTCTAATTGTTTAAGGAGATCCATTGTATTTTAGCAATTCATCTAAATGAAATTGCATTTTAGCCAATCTTTTTTTTTTCACCAAGCCCCCCTAGCTTTGGGGTTACCAATGTGTTGAAAATCTTGGCGAAAAATTCGAGTTAGAAATAAATCACAAATAGTACTACTACCATATCCAGTCTACCTCACCTTGGGCTCTTGGCCCACATCGTTTTGCTCGTGCTGATAAAGCTCATAGAGCTATTCTAGAAATAACCGAGATGAAAGTTGAAAAAAAAAAGAGAAAAGAAGAAAATGAGTCCTATTCTCGTTCGTTCCCCCGCCACAGGCGCACCGCGGATTCTTTCGCCAGTGATCCTCCATGATTTCCTGTTCTTGTTGCTCACATGGGCCACGGCATGTTCGTCCGCTAGATTTGATGTTGTGTAGCCATTAACCAT
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| CDS seq | ATGGTTAATGGCTACACAACATCAAATCTAGCGGACGAACATGCCGTGGCCCATGTGAGCAACAAGAACAGGAAATCATGGAGGATCACTGGCGAAAGAATCCGCGGTGCGCCTAATAGCTCTATGAGCTTTATCAGCACGAGCAAAACGATGTGGGCCAAGAGCCCAAGGTTCCTAGTTGTAATCGATGACATAGCAAGCATAGAAACATGGAACAGTATTAGTGGTGCGTTTGTCGAAACATGGAACAGCGGAAGCAGAATTATTACAACTACACGAAGAAAGGATGTAGCTAATGCCTGCTGCTCTAGCTTCCATGGCATTGTCTATAAGATGAAACCACTAGGTTGGACGGACTCCAGAAGCTTATTTTTCAGAAGAATATATGGGTCAGATAACTACAGCCCTGAACTTGAAGAACTCATAATTGCTATTGATATTTTAAAGAAATGTGGAGGAGTTCCGTTGGCTGTAGTTGTCATAGCTAGTCTTTTGGCTAGTCAAGAAGAAGTTAATAAGATAAAATACTCTATGGGGTTTGAACTGGAAAGAAATCCTAACTCTAAATGGATGAAGCATATACTTAAACTTAGCTACAATAATTTATCTTTGGATCTGAAGACGTGCTTTCTATATCTTCATATGTATCCTGAAAACTATAACATCATGAAGAAAGACTTGATGAGACAATGGATAGCTGAAGGATTTATTACCCAAAAAGATAACCGAGACCTAGAAGATATTGCTGAGAGCTACTTCAGTGACCTCATAAATAGAAGCCTGATAAAGCCAGCTCAGTTTAAGCATGGTGAGGTTGTCTCCTGTCGTGTTGTGCACAATTTGTTTCTTGATCTTATTGTTGAGAAGTCCACGGAGGAAAACTTTGTGACTGTAATTAGGACTGATCAAGATTGCTCAAGACGACATAATTTTTTGATTCGCCGGCTCAGCTACCAATCAAACCGTGGTAACTTGATCCAAGCAAGTGAGTCTTTACATCAAGTCCGATCCGTCATTTATTTTGGGGATCGGCTGCATCAGCGTGGTGAAAGCTTGCCTCGTCTTTAG
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| Protein seq | MVNGYTTSNLADEHAVAHVSNKNRKSWRITGERIRGAPNSSMSFISTSKTMWAKSPRFLVVIDDIASIETWNSISGAFVETWNSGSRIITTTRRKDVANACCSSFHGIVYKMKPLGWTDSRSLFFRRIYGSDNYSPELEELIIAIDILKKCGGVPLAVVVIASLLASQEEVNKIKYSMGFELERNPNSKWMKHILKLSYNNLSLDLKTCFLYLHMYPENYNIMKKDLMRQWIAEGFITQKDNRDLEDIAESYFSDLINRSLIKPAQFKHGEVVSCRVVHNLFLDLIVEKSTEENFVTVIRTDQDCSRRHNFLIRRLSYQSNRGNLIQASESLHQVRSVIYFGDRLHQRGESLPRL |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:Q2R8L1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsMH63_12G0234500 | OsMH63_12T0234500-mRNA-1 | Chr12 | 16157487 | 16160221 | - | maker | ||
| CDS seq | ATGGTTAATGGCTACACAACATCAAATCTAGCGGACGAACATGCCGTGGCCCATGTGAGCAACAAGAACAGGAAATCATGGAGGATCACTGGCGAAAGAATCCGCGGTGCGCCTAATAGCTCTATGAGCTTTATCAGCACGAGCAAAACGATGTGGGCCAAGAGCCCAAGGTTCCTAGTTGTAATCGATGACATAGCAAGCATAGAAACATGGAACAGTATTAGTGGTGCGTTTGTCGAAACATGGAACAGCGGAAGCAGAATTATTACAACTACACGAAGAAAGGATGTAGCTAATGCCTGCTGCTCTAGCTTCCATGGCATTGTCTATAAGATGAAACCACTAGGTTGGACGGACTCCAGAAGCTTATTTTTCAGAAGAATATATGGGTCAGATAACTACAGCCCTGAACTTGAAGAACTCATAATTGCTATTGATATTTTAAAGAAATGTGGAGGAGTTCCGTTGGCTGTAGTTGTCATAGCTAGTCTTTTGGCTAGTCAAGAAGAAGTTAATAAGATAAAATACTCTATGGGGTTTGAACTGGAAAGAAATCCTAACTCTAAATGGATGAAGCATATACTTAAACTTAGCTACAATAATTTATCTTTGGATCTGAAGACGTGCTTTCTATATCTTCATATGTATCCTGAAAACTATAACATCATGAAGAAAGACTTGATGAGACAATGGATAGCTGAAGGATTTATTACCCAAAAAGATAACCGAGACCTAGAAGATATTGCTGAGAGCTACTTCAGTGACCTCATAAATAGAAGCCTGATAAAGCCAGCTCAGTTTAAGCATGGTGAGGTTGTCTCCTGTCGTGTTGTGCACAATTTGTTTCTTGATCTTATTGTTGAGAAGTCCACGGAGGAAAACTTTGTGACTGTAATTAGGACTGATCAAGATTGCTCAAGACGACATAATTTTTTGATTCGCCGGCTCAGCTACCAATCAAACCGTGGTAACTTGATCCAAGCAAGTGAGTCTTTACATCAAGTCCGATCCGTCATTTATTTTGGGGATCGGCTGCATCAGCGTGGTGAAAGCTTGCCTCGTCTTTAG
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| Protein seq | MVNGYTTSNLADEHAVAHVSNKNRKSWRITGERIRGAPNSSMSFISTSKTMWAKSPRFLVVIDDIASIETWNSISGAFVETWNSGSRIITTTRRKDVANACCSSFHGIVYKMKPLGWTDSRSLFFRRIYGSDNYSPELEELIIAIDILKKCGGVPLAVVVIASLLASQEEVNKIKYSMGFELERNPNSKWMKHILKLSYNNLSLDLKTCFLYLHMYPENYNIMKKDLMRQWIAEGFITQKDNRDLEDIAESYFSDLINRSLIKPAQFKHGEVVSCRVVHNLFLDLIVEKSTEENFVTVIRTDQDCSRRHNFLIRRLSYQSNRGNLIQASESLHQVRSVIYFGDRLHQRGESLPRL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0 | 0 | 0.333826 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0467300 | SBH | 0.224593 | 0.315545 | 2.699600 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g28070 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0467300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0012760 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0012940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0012840 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0012610 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0012320 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0012510 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0256100 | SBH | 0.1069475 | 10.489381 | 0.1049745 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0012340 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0012700 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0012560 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0012510 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0012770 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G012470 | RBH | 0.084047 | 0.0 | 0.711411 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0012320 | SBH | 0.0 | 0.0 | 0.0 |
