Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0017650 | OGI:07006270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:21714470-21720423 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaatttttcagctcagatgtatCATActcctgaagttggattaattAaaaacaagaaagtttgcctggatgaatcattcaatagtttgtactgattatttccctcactaatttctatataagcaaatagtcattgtatttgaagttttaacattaatgttactgtgcatattaactacTTttgtcatagtattgaatattttttctttttttatagcttcagctgctacagcagctattgatgctgttaaagatgttgcaaagaaaattaggtcaagaatggctcatcttaaatctaaagagaagatgaataggatttttaatggcactagatctttccttgagattcttgattccgaagattctagagattgtgacagtgatgattgcttgcctcatattgtggattctgaggcagatttcaatgaaaatgagtcacctattgatgcaaggcccttgtcctcccaagtatgaatttcttattgttttcaaattttattttttttagcttttataataatgtcatgttgtttacattatctgtttttaaccactttttatgtatggtgatatttgcttttttaactcatttccaacctttatgcagattgctctcaattctaactctttccacccaaatgtgagaacatataacaatttgaagactctgagcaataacaaggataaaggaaaatttgatgctgaatttgtcaagaaaagggcattccaagatctcacagtatgtgtgtttcttatgttttgtttatattctgctctttttcctaatgttcttttaggtttcaaaattttcaaagtttcaattatttagtttatccattctctttattacaaactatctgtttttcctaatttatgtttttttttcagaattcacctgatgttgtttgtcttgggtccaacacatgttctaacaatatgaaaaatatgtgcattaaatcttagcatatttacaacaAGagcaatcaatttgattccaattacaaagtatttggctctggtttcaataattctggagcaagctcttcaggtggcagattgccctcacatggtccaagaagacctcttaagccatctagacatgcaagtgatccttttgtaccagttagacggcgctttccagtttctgaacaagaaaacaagtacttcactgcaatttgttgtctcgctcatactagatggcaaaggtatttttcaaaaatattttgcgttttaacttcattgcaatttgttgtgtcgctcgtactagatggcaaaggtattttctaaaatatttgtaattgtagttcttactatgctgctcaatcatttgtttgttgcccttattgtcctttttttgcagcttgtttacagtaaatattgacaatgttcgtatcacattttccaattttggaaattctttgaggattggtggtgatgtttcaaactatgtgatatctgccttttgtcgactgatGttccacaacaaccatccatctaaatcaaagaagaattatttcttttcttccattggggtaagtatttctgcatacatatagtagtgttttccTtttatatatgctgctgtgttttccttttatatatgctgctttattaattgtttatttatattttttattatcattgttagaggaattttctctcttctgggaggcaaagattgtggttgtgattgagatctagtcttataacactccatatgccatTAttttctctaacaaccatcacacatttgcaatcagttctcaatagaacatttgtatttcttgtccctttctttttctgaacttggttggttgcattgtcctgattttttccatgcctgttgcatttgtatgtgtatttgatgacttcattgttccttttcttgtcactggtcttcaggctgtgggcaatcacaatggagaatccaattaaataagcatagaaattgaagaatgtgtatgcttcatcatcagtcttgaattgcatcccttcacaaggtatatgacggctgtctatctcatcattgtcagcttcctcttcatctgctgcactttctttattttctttgtctgtcatttctgcattatcttctgtagaagctatgccagcttgcactgcaccatttacttgctcaagtgttgaattctctgtgctagtaatttgtacctgaatttttaaaaaaatatttcatattatgtgttagtagtcgcacttggatgttaagtagtAaagaaacattatttttattgtacaatatTAaaacaaaaaaatgaacatttgttctaaagtaacctcattgccccaattgtcttcatgttcctccaataaccattgattcacattggagcactctccaatagagttgcacactgactcaatattgtgtatgtgctgcaaaatcaacttgttctcttaatttttGttttttgttgtaataaaaaaagtatccccatacatacaaataaaaataaaaaCatattataaactaacaaaacacatacatagtgattgtcattgttactgttatatattttctctatatcattttccatgcattggtcttcaaaaggcatctacatggacaagtgggagcatgtgtaagaaacgagatttttttttgcttttttgtttaatattttgtgttaattatcttactatacctgcacttcttgttttgcttcaagaactgcttgatcaaagttatcaatgcatctgtTTGttgtgagaatcattgagttctgcatggaagacaaaataaatagtgtgttacaattggaaatacagtaatatagttatgtccagtttgttgttcaaataccaagttaagagttttatccaacttacactgtatcctattggtgattgaaggtgatagttcatttcagcaagccttccctgcattttttttgtccagaaaatttattagtttaacacgaaacttttaatttcagcgctgattgcttttacaaaaaagttatgatttgcttcttgtcacctgattggtatgcaagtttatcttaggactttgactttgaataacttgctgcatcagcgctgtgtagctcatttgttgtccctgcatatatttcaacattaaatttattagcaatataataataaagactgttatcactatgtccaactaattttttttctctcaccagctttgtttgcgagcttagcaacgcgtactcttcatgtaacatctgtcccccataagctatttctggagaattggtacctgcattttgataagaaaaaatgttagttgtagttttataattttatcatttttctatcaaataaaaTttcagttgttttattatttcccataattttgttcatatagcatggttcactgtgatttatatgctgtctagtttctatctcccaaattggcactttttgTttgaactgcattttttaaaaaacttaaataacaaaaacaagaaatttacaaatgtaaattcagttatagaccaatgtaagtttatttattatttaaatactagtcttttatagactcatcaaccaatctccttgttttgaaatgcattaaatttgtttcattggaacttacattgacattatattgaaattacatatgtaatttacacggtaggtcaatgtaattctaccgaattatagtaaattagtctaggtttgtttTAtgaactgtgaattttgttttgtgaatgtaattttctgttttcttcattgatatgaatatagtagttcaaattgaagttaaaaaaatacggttttgctatagttatatcgccataaatcttctctaattacagtaagtttgttagccctcaaagtttcgtttagattcgtgcaggactgctttgccattgtgcgtgcaagcactagtccgtactatatacacatgcacctgtgctgcttgctgtgatttatccgatcgatcacgctcctttgctatctacatgtaaaattacaccctacttacactctAtttacatatgtaattttaatattacatatgtaattttaggatttacatatgtaattttggatatttacattgagagcagtgctcttgcagtttgttctcttacattagttatacattgaaactacaaatgtaattttagtaataggtaaatgtaTttttttatcatacttacacccgacttacaaactagttacatcctagttacaccctacttacacactagttacatcctagttataccctacttacatcctagttacatatgtaatttttattatatttgactgtaaattttgtgttgtcctatttctaggtaaaatttaatttgctatgtctcatcaacgggttatgttgtgtcaatgtgctttgtcacgttagtttgcatatgctaatgaaatattgaattctgactgttttttcttaactcttatgtaagtactaaaattacatatgtaaattagaaaattacataccaattacATatgtaagtggggtgtaaatgaggtgtaactactgtgtaagtggctgaaaaaaatcgactgtagcatatggcgccatatttctagcaactccgtattagttcaatagagagcaatgctcttgcagtttgtcgtttaaattgaagttgaagtataatttctctggaatgaagtagttttataattgtattcaagtttggtgtagatttacactatttttcctgaacttacattgatttaatattgaaattacAaatgtaattttcatctatggccaatgtaattttctcctttttaagtttatttttcgctaggttagtactttactgtgtaattttgttttcaacttctatatatatttttatatgaatttaatttagtttacagtgaagatgttggcatcattgtagcaatttgttcacttcttacattgttaatatgttgaaattacaaatgtaattttagttactggtgaatgtattttctttttgcaattttgtaacttgttgtttcctaacattcaattttgtagttctttgttttaactacttctaattttgtaagtgtgtatattcctatgttcatggactgcctggattagtcttcattgattcacggcgagatgttgctagcttcttgtgtgccatgttatatgaattgattgaaaacaaaacttgtattcatgtctggtcacttgggcatttttttggtaggatgtaaaaattttggacagtgaaacacaattgacagtatctactgtactttgtacttgaaagcatccccattgttgtgttttatctcaatttacattgcatacagactaaacttacaaatgtaattttagtattaggtgattgtaattttttgaggagtttgtttttatggcattagcaaactctaaactttcataatgttgaaattttgggcaaaatgtcttactgtatggtggattggggcgattgggggtggtgtagtattaggtgtatagtgaagtaagaaaatttcaaaaagtaagctgcaaaatggatttgtttttagtagttgattgttgtatacattattcatcagtagtgcttctcctggatagtgatgtttgtattttggtttgtcagtagtttttcactaatttaatttattaaatgcaacaagcttgatctgatcagcatattcattttccagatctaggtgactttggtgagaagtatattgtgttaagatgaaaggagtatgtgtggggggatgcgacttgcatatatgtcatgaagaagaacataaaacagatctggatgccatatagctataaggtttgtaagattcttacctgcagaagacaagtttgctctagggtttgtgctctcttccatctgaatggattttgcgatctgcttttctgatgagaaatccttggttgttgagattgtaggatttcccatggtgtttttttcttgagcagattccaattccttttgtctagatttctcagcgatctccat
More
|
||||||||||
| CDS seq | atggagatcgctgagaaatctagacaaaaggaattggaatctgctcaagaaaaaaacaccatgggaaatcctacaatctcaacaaccaaggatttctcatcagaaaagcagatcgcaaaatccattcagatggaagagagcacaaaccctagagcaaacttgtcttctgcaggtaccaattctccagaaatagcttatgggggacagatgttacatgaagagtacgcgttgctaagctcgcaaacaaagctgggacaacaaatgagctacacagcgctgatgcagcaaaactcaatgattctcacaaCAAacagatgcattgataactttgatcaagcagttcttgaagcaaaacaagaagtgcaggtacaaattactagcacagagaattcaacacttgagcaagtaaatggtgcagtgcaagctggcatagcttctacagaagataatgcagaaatgacagacaaagaaaataaagaaagtgcagcagatgaagaggaagctgacaatgatgagatagacagccgtcatataccttgtgaagggatgcaattcaagactgatgatgaagcatacacattcttcaatttctatgcttatttaattggattctccattgtgattgcccacagcctgaagaccagtgacaagaaaaggaacaatgaagtcatcaaatacacatacaaatgcaacaggcatggaaaaaatcaggacaatgcaaccaaccaagagTATGatacatctgagctgaaaaattga
More
|
||||||||||
| Protein seq | MEIAEKSRQKELESAQEKNTMGNPTISTTKDFSSEKQIAKSIQMEESTNPRANLSSAGTNSPEIAYGGQMLHEEYALLSSQTKLGQQMSYTALMQQNSMILTTNRCIDNFDQAVLEAKQEVQVQITSTENSTLEQVNGAVQAGIASTEDNAEMTDKENKESAADEEEADNDEIDSRHIPCEGMQFKTDDEAYTFFNFYAYLIGFSIVIAHSLKTSDKKRNNEVIKYTYKCNRHGKNQDNATNQEYDTSELKN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0017650 | OsPr106_07g0017650.01 | Chr07 | 21714470 | 21720423 | - | NAM | ||
| CDS seq | atggagatcgctgagaaatctagacaaaaggaattggaatctgctcaagaaaaaaacaccatgggaaatcctacaatctcaacaaccaaggatttctcatcagaaaagcagatcgcaaaatccattcagatggaagagagcacaaaccctagagcaaacttgtcttctgcaggtaccaattctccagaaatagcttatgggggacagatgttacatgaagagtacgcgttgctaagctcgcaaacaaagctgggacaacaaatgagctacacagcgctgatgcagcaaaactcaatgattctcacaaCAAacagatgcattgataactttgatcaagcagttcttgaagcaaaacaagaagtgcaggtacaaattactagcacagagaattcaacacttgagcaagtaaatggtgcagtgcaagctggcatagcttctacagaagataatgcagaaatgacagacaaagaaaataaagaaagtgcagcagatgaagaggaagctgacaatgatgagatagacagccgtcatataccttgtgaagggatgcaattcaagactgatgatgaagcatacacattcttcaatttctatgcttatttaattggattctccattgtgattgcccacagcctgaagaccagtgacaagaaaaggaacaatgaagtcatcaaatacacatacaaatgcaacaggcatggaaaaaatcaggacaatgcaaccaaccaagagTATGatacatctgagctgaaaaattga
More
|
|||||||
| Protein seq | MEIAEKSRQKELESAQEKNTMGNPTISTTKDFSSEKQIAKSIQMEESTNPRANLSSAGTNSPEIAYGGQMLHEEYALLSSQTKLGQQMSYTALMQQNSMILTTNRCIDNFDQAVLEAKQEVQVQITSTENSTLEQVNGAVQAGIASTEDNAEMTDKENKESAADEEEADNDEIDSRHIPCEGMQFKTDDEAYTFFNFYAYLIGFSIVIAHSLKTSDKKRNNEVIKYTYKCNRHGKNQDNATNQEYDTSELKN
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g17020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0017740 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000500 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0011790 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017500 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0004170 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0340700 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018150 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0355200 | RBH | 0.0094375 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017370 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017560 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0017760 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017540 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G021820 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0011720 | RBH | 0.0 | 0.0 | 0.0 |
