Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0535300 | OGI:12055600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:21289207-21292174 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGCGGCGGCGGCGAAGCCGGAGGCGGGGGAGGGGGAGGCGACGAATTGCCACAGGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAACGATGAGGAGGAAGAGCTGCTCACCGAGCTCTCCCGCTACCGCCGCTACTGGACGGATCTTTGGTCCGACGATTCCGGCGACATTGACAGAAGAAGTGAGGAAGCATTCTTTTTTTTTTCTTTCTCAATTAGCCGCTAGCTAGCGTTGGGGATTTTTTTAGATGATTTTATGGTAAATACGTGCCAGACCCTTGTCGAATTCGCTCATTCCCTGGTTAGGTTTTAGGTTTCATATGAAAATCTGAAATCAACTGGTTGGCGCGCCGAATTCGCTCATGCTCATGTTAGGTTTTTAGTTTTCATCTCTAATCAACAGGTTCACGTGCCGATTAGGATTATGGTAGAAATGGAAAAATGAAAATAACATGTTGGGATTGGCATTCTTTACATAGATATCTATCAATATGATCTAATGGCTCATCTCTTTGATATATCTATTCTGATGCTTGACTGATTGATGTGGTTTATTGGATGGATGCAGCTGAGATTGGTCCCATGCGGTACACGGAGGAATCGCCCCGGTTCGCAATGCTCCTGGATTTACTTGAGGTTTTTTCTTTTGAGGTGACCGAGCTGAAAGGTATTCTACGCTGGCCAATAGATGTGTTTGGTCTCATCTCCGTTCGTGACTCTCTGGACCGGAACCGCAACTATATCTTTGAGCGCACCAGGAACAACTGCCAGACTCTCACTGCAAAGGTACCTCTATGCTTCATGGAAATAACAGTGCATAGTCATCAGTAAACAACCTGAAATATTCAAATGTGCATGGTTTAGAATCCTGTGATGGCTTTTCTTTTTGACCAACAGCAAAAAATAAAACCTGTGATAACATAATCAAGCAATTTTCCAAATCTCAAACTCCCCTACACATCAGAGCTTAACATATTTTCATGATGCATAAGGGGCATCACAAACATATGTGGGTTGCTAACAGAAATAACTACAGAAACTTTTGGTGCACAGGTGCAGAATTGATACTACAAAAATAAAAGGCTACCAAATCAATTGATAGCACATGCAGGGATACTTCCCCACTCTTATTGAATTTATAGCAACTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATATATGTGCCTAGATTCATTAGCATCTATATAAATGTGGGCAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAGCATTTTCCCCCCTATGAACTTGCAGGGGCTATCTTTAGCAAGGGCTATGTTCCTTGGTCCTTGCTTCAGCTTGTTGCGAACCATTCCAGTAGGATATTTAACAGACCCCTCATGAGTATGTGAATGGTAAAAGTGAGAATCAATCGGTAGTACAAATGTCCTAACTGCAGCAAGACGAATCATGCATGGATTCATCTCCTTGCAATACAGCTTGAGCCTAAGGGAAAACATTTTGCAAATATTTAGGGGTAGTAACATTTTGCAAATATTTAGGGGTAGTAACATTTTGCAGACATATAATATTTGTTATCTCATAGCCATCATCTTTGGTTTTTATCATAATAGTCATCATGTTTTAATGGGATTATTGACCATTATTCATGCCAATCCAAGAGTTTAAGGAGATGTAATGGCAATCCACAATTGACAATACAAAGCAAAATTCTTTGAGATGTTTTAGAGTAGAGAGTAAAAAGGGCAGCATCAAGAGTACAATTTGCCCAACAATTAACTACATTTTGTTGTGATACTTTGACATACTATGAAGATTCTATATGAAAAGCTCATGCAAAAAATGCTAATGAATAATGGTTGTGTTAATACTACAGTTCTGCGATAACAGGGTATTATTGATTTGCAAGTGCTGGTCATTAAAGATTCAGGCAGTAAAGATGAAGTTGTCAATACATATATCAGATATTTATCGTATACTGTATACTTATATGCATATTTTGCTATACAGTATCATTTTATTGTTGGGCAAAGGGAAAATAGAAAATCCAAGTTCAGTTATGCATAGCATGTCGTCAGTCTCACATATGTTTTCTTTTCCTAATTATGCTCCTGTTTATATTTTGTTTTGACAGTTCAATGCCCCATTCATATTATTGTGTTGAGTGGAACTTAGAACACATATGTGATAGAATTATGCATGTTTGTTCACCATCAATCTAGCTAATTTCACCTTATCCAAAAAAAAAATGGAAATATTTGCTGTGTTACATTGTTGCTACCATTCCTTATATTTAGTAATGTCACGGGTGTATGTAGGATTCATCTCTGGTTCTTACTGGTCCAAGCCGTGCAATCCTATTGATGGACCCTATTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCGAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAATGGCACCGCTCAGAGACACAGATGTGGCTCACTCCGCAGTATGTTGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCTCACATTCCTGTGGCATTGGAGGCTACAATCAAGGTCAGGATTACAGGAGGTTTAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCGTATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTCATTTCTCCCGCAGTGTGGTTGCAGTTGAAGGAAATGGTGTGCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGATGAGAATAACAGCTGTGATTACAAGAATTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGTGTTGAAGTTGCTTGGTCGCTCATGCTTTCATATTGA
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| CDS seq | ATGGCGGCGGCGGCGAAGCCGGAGGCGGGGGAGGGGGAGGCGACGAATTGCCACAGGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAACGATGAGGAGGAAGAGCTGCTCACCGAGCTCTCCCGCTACCGCCGCTACTGGACGGATCTTTGGTCCGACGATTCCGGCGACATTGACAGAAGAACTGAGATTGGTCCCATGCGGTACACGGAGGAATCGCCCCGGTTCGCAATGCTCCTGGATTTACTTGAGGTTTTTTCTTTTGAGGTGACCGAGCTGAAAGGTATTCTACGCTGGCCAATAGATGTGTTTGGTCTCATCTCCGTTCGTGACTCTCTGGACCGGAACCGCAACTATATCTTTGAGCGCACCAGGAACAACTGCCAGACTCTCACTGCAAAGGATTCATCTCTGGTTCTTACTGGTCCAAGCCGTGCAATCCTATTGATGGACCCTATTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCGAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAATGGCACCGCTCAGAGACACAGATGTGGCTCACTCCGCAGTATGTTGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCTCACATTCCTGTGGCATTGGAGGCTACAATCAAGGTCAGGATTACAGGAGGTTTAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCGTATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTCATTTCTCCCGCAGTGTGGTTGCAGTTGAAGGAAATGGTGTGCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGATGAGAATAACAGCTGTGATTACAAGAATTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGTGTTGAAGTTGCTTGGTCGCTCATGCTTTCATATTGA
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| Protein seq | MAAAAKPEAGEGEATNCHRRSAAGQEEEEEESKRPRDGNDEEEELLTELSRYRRYWTDLWSDDSGDIDRRTEIGPMRYTEESPRFAMLLDLLEVFSFEVTELKGILRWPIDVFGLISVRDSLDRNRNYIFERTRNNCQTLTAKDSSLVLTGPSRAILLMDPIEFEIELRVKGTSPSEDKILSAEAFGYNGTAQRHRCGSLRSMLLSGARSTLEFKYAHIPVALEATIKVRITGGLTDFCGKFIAHTASIKEDVVLLDSGEEMVAISHDGAIHFSRSVVAVEGNGVLTVGVHARQSGDENNSCDYKNFIPVRCGRSHDTLDVGFCQMSVEVAWSLMLSY |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0535300 | OsNip_12t0535300-00 | Chr12 | 21289207 | 21292174 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCGGCGGCGAAGCCGGAGGCGGGGGAGGGGGAGGCGACGAATTGCCACAGGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAACGATGAGGAGGAAGAGCTGCTCACCGAGCTCTCCCGCTACCGCCGCTACTGGACGGATCTTTGGTCCGACGATTCCGGCGACATTGACAGAAGAACTGAGATTGGTCCCATGCGGTACACGGAGGAATCGCCCCGGTTCGCAATGCTCCTGGATTTACTTGAGGTTTTTTCTTTTGAGGTGACCGAGCTGAAAGGTATTCTACGCTGGCCAATAGATGTGTTTGGTCTCATCTCCGTTCGTGACTCTCTGGACCGGAACCGCAACTATATCTTTGAGCGCACCAGGAACAACTGCCAGACTCTCACTGCAAAGGATTCATCTCTGGTTCTTACTGGTCCAAGCCGTGCAATCCTATTGATGGACCCTATTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCGAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAATGGCACCGCTCAGAGACACAGATGTGGCTCACTCCGCAGTATGTTGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCTCACATTCCTGTGGCATTGGAGGCTACAATCAAGGTCAGGATTACAGGAGGTTTAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCGTATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTCATTTCTCCCGCAGTGTGGTTGCAGTTGAAGGAAATGGTGTGCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGATGAGAATAACAGCTGTGATTACAAGAATTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGTGTTGAAGTTGCTTGGTCGCTCATGCTTTCATATTGA
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| Protein seq | MAAAAKPEAGEGEATNCHRRSAAGQEEEEEESKRPRDGNDEEEELLTELSRYRRYWTDLWSDDSGDIDRRTEIGPMRYTEESPRFAMLLDLLEVFSFEVTELKGILRWPIDVFGLISVRDSLDRNRNYIFERTRNNCQTLTAKDSSLVLTGPSRAILLMDPIEFEIELRVKGTSPSEDKILSAEAFGYNGTAQRHRCGSLRSMLLSGARSTLEFKYAHIPVALEATIKVRITGGLTDFCGKFIAHTASIKEDVVLLDSGEEMVAISHDGAIHFSRSVVAVEGNGVLTVGVHARQSGDENNSCDYKNFIPVRCGRSHDTLDVGFCQMSVEVAWSLMLSY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.685219 | 1.817895 | 9.587988 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0534700 | RBH | 1.319071 | 0.343787 | 1.289284 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34980 | RBH | 0.438238 | 0.913525 | 1.699122 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0535300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015880 | RBH | 1.045491 | 14.038821 | 4.204903 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016020 | RBH | 0.424211 | 4.660393 | 2.099484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016370 | RBH | 1.472260 | 0.840071 | 6.747892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015720 | RBH | 0.317875 | 0.465598 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015200 | RBH | 3.372707 | 5.182240 | 9.576188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0279300 | RBH | 4.3491805 | 13.6903635 | 4.9328225 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015380 | RBH | 0.601840 | 0.499681 | 1.856719 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0311400 | RBH | 4.0481535 | 14.409247 | 10.8223305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015560 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015760 | RBH | 0.173504 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015780 | SBH | 1.755035 | 3.699041 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015690 | RBH | 0.712442 | 0.0 | 0.947640 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015850 | SBH | 0.282330 | 3.885233 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015820 | RBH | 0.266799 | 0.345304 | 0.558680 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015520 | RBH | 0.000000 | 0.0 | 6.461215 |
