Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0534700 | OGI:12055600 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:21254001-21257393 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCCAAAAAAAAAAAATTTCCTCGCTCCGAGAAAGTTCAGGCTAGGGCAAAAGCCGGAGGGGGATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAAGTGAGGAAGCTTCTTTTTTTTTTGTTTTGTTTTACAGATGATTTTATGGTAAATACGAATTCGCTCATGCTCTTGTTAGGTTTTTAGTTTTCATCTCAAATCGACATGCTCGCTCGCTGATTATGGTAGGCGGGAGCCTGGGGTGCACAATTGTGGGGGATGGAAACATGAACATGGAAAATGTTGGGATTGCTATTTTTCACATGAATTTCTATCAATGATATAATGGCTCATCTCTTTGGTATGTTGCAAAGGAAAAAGAAATGGTAATGCTTGACTGATTGATGTGGTTTATTGGATGGATGCAGCTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTGAGCGCACCAGGAACTACTGCCAGACTCTCACTGCAAAGGTACCTCTATGCTTCATGGAAATAACAGCGCAAAGTCATCAGTCTTTTGACTTTTATACAGGCAGCTAGTTAGTTTTGCAATTTCACAATTGTGGTGCACTAGTGCAGTACTTTTTCACTGCACTGCAATCTAGAGATGTCTGCTGCAGTTCCGTTAAGAAATTGGATGTTACTTAAACAGATTAGAACAGTCCAAACTTATATGCACATCATGGTTCCATTTCACAAATTATATGTGATAGTCTGGTACTAGTTGTATCACAGAAGCATATTAGTAAACAACTTGAAATATTCAAATGCTCATGATTTAGAATCATGTAATGGCATTTCTTTTTTACCAAAGGCAAAACATAAAACCTGTGATAACATAATCAAGCAAATTTTCCAATCTCAAACTCCCCTACACACCAGAGCTTAGCAAATTCTCATGATATATAAGGGGCACCACAAACATGTGTGTTGCTAACAGAAACAACTACAGAAACATTCGGTGTGCAGGCGCTGAATTAGTACTTCAAAATAAAAGGCTACCAAATCATCAATTGATAGCACATGCAAGGGCACTTCCCCACTCTGATTTAATTCATAGAAACTAGCGTTTTGCCCCATATGAACTTGCAGAGGCTATCTTTTCTTGCAACATCTGTGCTCCTTGCTTCAGTTTGTCTGCAAGAACTGTATTCTTTTGCCAATCATTCAAGTAGGATATTTAAACACACCCCTCATGAATGCGTGAATGGTAAAGTGAGGGTCAAGAACTTTCCTATGGTCAAAAGAGATGCTACTCTCTCGGTAGTACAACTGTCCTAACTGCAGCAAGACGAATCATGCATGGATTCATCTCCTTGCAGTACAGCTTGAGCCTAAGGGAAAACATTTTGCAAATATTTAAGGGTAATTAACACTGCGAGAACACACCTGAAAGGTTGTAAGCAGGTCACAGTAACAGCAAGTGATCAATTGTGTTTCAGGTTTGGCAGACATATAATATTTGTTATCTCATAGCCATCTTCGTTTCTTTATTGCAATAGCCATCATGTTTTAATGGGATTGTTGAATATTGAACATTATTAATGCCAATTTCCAAGAGCCTAAGGAGATGCAATGGTGATCCACCATTGATGATAGAAAGGAAATTCTTTGAGATGTTTTAGGGTAGAGGAAAAAAGGTAGCACCAAGAGTACAGTTTACCCAACAATAAACTACAATTTGTTGTGATATTTTGACATACTATGAATATTCTTTATGAAAAGCTCCTGAAAAAAAGTGTTAATAAATAATGATTGTATTAATACTACACTTCTGTGACAACAGTGCAATATTAATTTGTGAGTGCTGGTCATTAAAGATTCAAGCAATAAAGATGAAGTTGTCAATACATATATTAAATATTAATCGTAGATCATATATATGCTTATTTTCCTATGCCGTATCAATGTGTTCTTGAGCAAAGGGAAAATAGAAATTCCAAGTTGAGTTATGCATAGCATGCTGTCAGGCTCACATATGTTTTTCTATTCATAATTATATGCTCATGTTTTTATTTTGTTTTGACAGTTCAAATGTGCCATTCATATTGTTTTGTTGAGTGGAACTTAGGACACAGAACGCAATAGAGTTATGCACGTTTGTTCACCTTCAGTCTAGCTAGTTTCATCTTATCCAATAAATTTGGAAATATTTGCTATGTTACATCGTTGCTACCATTCCTTTCCAATTGTTTTCATGCAGAGCTAAGTGGTGGATTGCGCATCATTACTATTATTCTTATATTTAGTAATGTCATCAGTGTGTGTAGGATTCATCTCTGGTTCTCACTGGTCCAAGCCGTGCAGTCCAATTGATTGACCCTGTTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCAAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAACTGCATTGCTCAGAGACTCAGATGTGGCTCACTCCGCAGTATGATGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCACACATTCCTTTGGCATTGGAGGCTACAATCAAGGTCAGGATTACTAGGGGTTCAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCATATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTAATTTCTCCCGCAGTGTAGTTGCAGTTGAAGGAAATGGCGGAGTTCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGGTGAGAATATGAGATGTTCTTATAAAGAGTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGCGTTGAAGTTGCTTGGTCGCTCATCTTTTAATATTGAAAAAAGTCTAGGCCCTGATAATATTTTTCTTGCATATGACAATACTTAATATTCGGTATTAGTAGTGGAAGTAATAGATGTGCTCCGTGGCATTGTAATACACTAATATGACAGTACTGAGTTTGGACCGGGGGCCTCACGATCCATGCCATTGTAAATTTGCTACTCTATATCATAAAAATGCTATTATTATTCACCTATTTGTAGATAGTAACCATGTC
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| CDS seq | ATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTGAGCGCACCAGGAACTACTGCCAGACTCTCACTGCAAAGGATTCATCTCTGGTTCTCACTGGTCCAAGCCGTGCAGTCCAATTGATTGACCCTGTTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCAAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAACTGCATTGCTCAGAGACTCAGATGTGGCTCACTCCGCAGTATGATGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCACACATTCCTTTGGCATTGGAGGCTACAATCAAGGTCAGGATTACTAGGGGTTCAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCATATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTAATTTCTCCCGCAGTGTAGTTGCAGTTGAAGGAAATGGCGGAGTTCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGGTGAGAATATGAGATGTTCTTATAAAGAGTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGCGTTGAAGTTGCTTGGTCGCTCATCTTTTAA
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| Protein seq | MAAGEGEATTCHKRSAAGQEEEEESKRPRDGSEEEEELLTDLSRYRRYWTDLWSDVSGDIAKRTEFGPMRYTEEPVPPFAKLQDLLEVFSFEVTELKGILSWPIDVFGLISVRDSLDRNRNYIFERTRNYCQTLTAKDSSLVLTGPSRAVQLIDPVEFEIELRVKGTSPSKDKILSAEAFGYNCIAQRLRCGSLRSMMLSGARSTLEFKYAHIPLALEATIKVRITRGSTDFCGKFIAHTASIKEDVILLDSGEEMVAISHDGAINFSRSVVAVEGNGGVLTVGVHARQSGGENMRCSYKEFIPVRCGRSHDTLDVGFCQMSVEVAWSLIF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0534700 | OsNip_12t0534700-01 | Chr12 | 21254021 | 21257370 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTGAGCGCACCAGGAACTACTGCCAGACTCTCACTGCAAAGGATTCATCTCTGGTTCTCACTGGTCCAAGCCGTGCAGTCCAATTGATTGACCCTGTTGAATTTGAAATTGAGCTAAGAGTCAAGGGGACAAGTCCCTCCAAAGATAAGATCTTGAGCGCTGAAGCATTTGGGTATAACTGCATTGCTCAGAGACTCAGATGTGGCTCACTCCGCAGTATGATGTTATCAGGAGCACGCAGCACATTGGAGTTCAAGTATGCACACATTCCTTTGGCATTGGAGGCTACAATCAAGGTCAGGATTACTAGGGGTTCAACTGATTTCTGTGGAAAGTTCATTGCACATACTGCTAGTATCAAGGAAGATGTCATATTGCTGGACTCTGGAGAAGAAATGGTGGCTATCTCCCATGATGGAGCCATTAATTTCTCCCGCAGTGTAGTTGCAGTTGAAGGAAATGGCGGAGTTCTGACTGTTGGTGTTCATGCAAGGCAGAGTGGTGGTGAGAATATGAGATGTTCTTATAAAGAGTTTATCCCGGTAAGATGTGGACGGAGTCATGACACACTTGATGTTGGATTTTGCCAGATGAGCGTTGAAGTTGCTTGGTCGCTCATCTTTTAA
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| Protein seq | MAAGEGEATTCHKRSAAGQEEEEESKRPRDGSEEEEELLTDLSRYRRYWTDLWSDVSGDIAKRTEFGPMRYTEEPVPPFAKLQDLLEVFSFEVTELKGILSWPIDVFGLISVRDSLDRNRNYIFERTRNYCQTLTAKDSSLVLTGPSRAVQLIDPVEFEIELRVKGTSPSKDKILSAEAFGYNCIAQRLRCGSLRSMMLSGARSTLEFKYAHIPLALEATIKVRITRGSTDFCGKFIAHTASIKEDVILLDSGEEMVAISHDGAINFSRSVVAVEGNGGVLTVGVHARQSGGENMRCSYKEFIPVRCGRSHDTLDVGFCQMSVEVAWSLIF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0534700 | OsNip_12t0534700-02 | Chr12 | 21254001 | 21257393 | + | IsoSeq | ||
| CDS seq | CCCAAAAAAAAAAAATTTCCTCGCTCCGAGAAAGTTCAGGCTAGGGCAAAAGCCGGAGGGGGATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATT
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| Protein seq | PKKKKFPRSEKVQARAKAGGGWRRGRGRQRLATRDRRRGRRRRRSRRGHAMAARRRKSCSPTSPATAATGRICGPTFPATSPKELSLVPCGTRRNRCPRSQSSKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 21254782 | 21256582 | + | OsNip_12t0534700-02 | OsNip_12t0534700-02,OsNip_12t0534700-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.319071 | 0.343787 | 1.289284 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0535300 | RBH | 0.685219 | 1.817895 | 9.587988 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34920 | RBH | 0.912458 | 0.236522 | 0.279225 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0534700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015840 | RBH | 0.431466 | 8.147379 | 3.067378 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015970 | RBH | 0.403328 | 1.393050 | 3.415756 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016320 | RBH | 1.691952 | 11.585996 | 7.548234 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015670 | RBH | 0.055835 | 0.090832 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015200 | SBH | 3.372707 | 5.182240 | 9.576188 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0278700 | RBH | 3.262631 | 8.219285 | 11.454176 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015330 | RBH | 0.328623 | 1.470930 | 2.641357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0310800 | RBH | 3.079402 | 8.095809 | 13.8597895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015530 | RBH | 0.432422 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015710 | RBH | 0.269329 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015780 | RBH | 1.755035 | 3.699041 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015640 | RBH | 0.352581 | 0.0 | 1.252563 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015810 | RBH | 0.370695 | 3.056272 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015820 | SBH | 0.266799 | 0.345304 | 0.558680 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015470 | RBH | 1.531822 | 10.896912 | 4.944697 |
