Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0015530 | OGI:12055600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:20186031-20189396 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accCAAAAAAAAAAAATTTCCTCGCTCCGAGAAAGTTCAGGCTAGGGCAAAAGCCGGAGGGGGATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAAGTGAGGAAGCTTCTTTTTTTTTTTTTGTTTTACAGATGATTTTATGGTAAATACGAATTCGCTCATGCTCTTGTTAGGCTTTTAGTTTTCATCTCAAATCGACATGCTCGCTCGCTGATTATGGTAGGCGGGAGCCTGGGGTGCACAATTGTGGggggGATGAAAACATGAACATGGAAAATGTTGGGATTGCTATTTTTCACATGAATTTCTATCAATGATATAATGGCTCATCTCTTTGGTATGTTGCAAAGGAAAAAGAAATGGTAATGCTTGACTGATTGATGTGGTTTATTGGATGGATGCAGCTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTgagcgcaccaggaactactgccagactctcactgcaaaggtacctctatgcttcatggaaataacagcgcaaagtcatcagtcttttgacttttatacaggcagctagttagttttgcaatttcacaattgtggtgcactagtgcagtactttttcactgcactgcaatctagagatgtctgctacagttccgttaagaaattggatgttacttaaacagattagaacagtccaaacttatatgcacatcatggttccatttcacaaattatatgtgatagtctggtactagttgtatcacagaagcatattagtaaacaactcgaaatattcaaatgctcatgatttagaatcatgtaatggcatttcttttttaccaaaggcaaaacataaaacctgtgataacataatcaagcaaatttttcaatctcaaactcccctacacaccagagcttagcaaattctcatgatatataaggggcaccacaaacatgtgtgttgctaacagaaacattcggtgtgcaggcgctgaattagtacttcaaaataaaaggctaccaaatcatcaattgatagcacatgcaagggcacttccccactctgatttaattcatagaaactagcgtttttccccatatgaacttgcagaggctatcttttcttgcaacatctgtgctccttgcttcagtttgtctgcaagaactgtattcttttgccgatcattccagtaggatatttaaacacacccctcatgaatgcgtgaatggtaaagtgagggtcaagaactttcctatggtcAaaagagatgctactctctcggtagtacaactgtcctaactgcagcaagacgaatcatgcatggattcatctccttgcagtacagcttgagcctaagggaaaacattttgcaaatatttaagggtaattaacactgcgagaacacacctgaaaggttgtaagcaggtcacagtaacagcaagtgatcaattgtgtttcaggtttggcagacatataatatttgttatctcatagccatcttcgtttctttattgcaatagccatcatgttttaatgggattgttgaatattgaacattattaatgccaatttccaagagcctaaggagatgcaatggtgatccaccattgatgatagaaaggaaattctttgagatgttttagggtagaggAaaaaaggtagcaccaagagtacagtttacccaacaataaactacaatttgttgtgatattttgacatactatgaatattctttatgaaaagctcctgaaaaaaagtgttaatgaataatgattgtattaatactacacttctgtgacaacagtgcaatattaatttgtgagtgctggtcattAaagattcaagcaataaagatgaagttgtcaatacatatattaaatattaatcgtagatcatatatatgcttattttcctatgccgtatcaatgtgttcttgagcaaagggaaaatagaaattccaagttgagttatgcatagcatgctgtcaggctcgcatatgtttttctattcataattatatgctcatgTttttattttgttttgacagttcaaatgtgccattcatattgttttgttgagtggaacttaggacacagaacgcgatagagttatgcacgtttgttcaccttcagtctagctagtttcatcttatccaataaatttggaaatatttgctatgttacatcgttgctaccattcctttccaattgttttcatgcagagctAagtggtggattgcgtatcattactattattcttatatttagtaatgtcatccgtgtgtataggattcatctctggttctcactggtccaagccgtgcagtccaattgattgaccctattgaatttgaaattgagctaagagtcaaggggacaagtccctccaaagataagatcttgagcgctgaagcatttgggtataactgcattgctcagagactcagatgtggctcactccgcagtatgatgttatcaggagcacgcagcacattggagttcaagtatgcacacattcctttggcattggaggctacaatcaaggtcaggattactaggggttcaactgatttctgtggaaagttcattgcacatactgctagtatcaaggaagatgtcatattgctggactctggagaagaaatggtggctatctcccatgatggagccattaatttctcccgcagtgtagttgcagttgaaggaaatggcggagttctgactgttggtgttcatgcaaggcagagtggtggtgagaatatgagatgttcttgtaaagagtttatcccggtaagatgtggacggagtcatgacacacttgatgttggattttgccagatgagcgttgaagttgcttggtcgctcatcttttaatattgaaaaaagtataggccctgataatatttttcttgcatatgacaatacttaatattcggtattagtagtggaagtaatagatgtgctccgtggcactgtaatacactaatatgacagtactgaatttggaccgggggcctcacgatccatgccattgtaaatttgctactctatatcataaaaatgctattattattcacctatttgta
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| CDS seq | ATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTgagcgcaccaggaactactgccagactctcactgcaaaggattcatctctggttctcactggtccaagccgtgcagtccaattgattgaccctattgaatttgaaattgagctaagagtcaaggggacaagtccctccaaagataagatcttgagcgctgaagcatttgggtataactgcattgctcagagactcagatgtggctcactccgcagtatgatgttatcaggagcacgcagcacattggagttcaagtatgcacacattcctttggcattggaggctacaatcaaggtcaggattactaggggttcaactgatttctgtggaaagttcattgcacatactgctagtatcaaggaagatgtcatattgctggactctggagaagaaatggtggctatctcccatgatggagccattaatttctcccgcagtgtagttgcagttgaaggaaatggcggagttctgactgttggtgttcatgcaaggcagagtggtggtgagaatatgagatgttcttgtaaagagtttatcccggtaagatgtggacggagtcatgacacacttgatgttggattttgccagatgagcgttgaagttgcttggtcgctcatcttttaa
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| Protein seq | MAAGEGEATTCHKRSAAGQEEEEESKRPRDGSEEEEELLTDLSRYRRYWTDLWSDVSGDIAKRTEFGPMRYTEEPVPPFAKLQDLLEVFSFEVTELKGILSWPIDVFGLISVRDSLDRNRNYIFERTRNYCQTLTAKDSSLVLTGPSRAVQLIDPIEFEIELRVKGTSPSKDKILSAEAFGYNCIAQRLRCGSLRSMMLSGARSTLEFKYAHIPLALEATIKVRITRGSTDFCGKFIAHTASIKEDVILLDSGEEMVAISHDGAINFSRSVVAVEGNGGVLTVGVHARQSGGENMRCSCKEFIPVRCGRSHDTLDVGFCQMSVEVAWSLIF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0015530 | OsLima_12g0015530.01 | Chr12 | 20186031 | 20189279 | + | NAM | ||
| CDS seq | ATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATTTACTAGAGGTTTTTTCTTTTGAGGTGACTGAGCTGAAAGGTATTCTAAGCTGGCCAATAGATGTGTTTGGCCTCATCTCTGTCCGTGACTCGCTGGACCGGAATCGCAACTATATCTTTgagcgcaccaggaactactgccagactctcactgcaaaggattcatctctggttctcactggtccaagccgtgcagtccaattgattgaccctattgaatttgaaattgagctaagagtcaaggggacaagtccctccaaagataagatcttgagcgctgaagcatttgggtataactgcattgctcagagactcagatgtggctcactccgcagtatgatgttatcaggagcacgcagcacattggagttcaagtatgcacacattcctttggcattggaggctacaatcaaggtcaggattactaggggttcaactgatttctgtggaaagttcattgcacatactgctagtatcaaggaagatgtcatattgctggactctggagaagaaatggtggctatctcccatgatggagccattaatttctcccgcagtgtagttgcagttgaaggaaatggcggagttctgactgttggtgttcatgcaaggcagagtggtggtgagaatatgagatgttcttgtaaagagtttatcccggtaagatgtggacggagtcatgacacacttgatgttggattttgccagatgagcgttgaagttgcttggtcgctcatcttttaa
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| Protein seq | MAAGEGEATTCHKRSAAGQEEEEESKRPRDGSEEEEELLTDLSRYRRYWTDLWSDVSGDIAKRTEFGPMRYTEEPVPPFAKLQDLLEVFSFEVTELKGILSWPIDVFGLISVRDSLDRNRNYIFERTRNYCQTLTAKDSSLVLTGPSRAVQLIDPIEFEIELRVKGTSPSKDKILSAEAFGYNCIAQRLRCGSLRSMMLSGARSTLEFKYAHIPLALEATIKVRITRGSTDFCGKFIAHTASIKEDVILLDSGEEMVAISHDGAINFSRSVVAVEGNGGVLTVGVHARQSGGENMRCSCKEFIPVRCGRSHDTLDVGFCQMSVEVAWSLIF
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0015530 | OsLima_12g0015530.02 | Chr12 | 20186031 | 20189396 | + | IsoSeq | ||
| CDS seq | ccCAAAAAAAAAAAATTTCCTCGCTCCGAGAAAGTTCAGGCTAGGGCAAAAGCCGGAGGGGGATGGCGGCGGGGGAGGGGGAGGCAACGACTTGCCACAAGAGATCGGCGGCGGGGCAGGAGGAGGAGGAGGAGTCGAAGAGGCCACGCGATGGCAGCGAGGAGGAGGAAGAGCTGCTCACCGACCTCTCCCGCTACCGCCGCTACTGGACGGATCTGTGGTCCGACGTTTCCGGCGACATCGCCAAAAGAACTGAGTTTGGTCCCATGCGGTACACGGAGGAACCGGTGCCCCCGTTCGCAAAGCTCCAAGATT
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| Protein seq | PKKKKFPRSEKVQARAKAGGGWRRGRGRQRLATRDRRRGRRRRRSRRGHAMAARRRKSCSPTSPATAATGRICGPTFPATSPKELSLVPCGTRRNRCPRSQSSKI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr12 | 20186812 | 20188600 | + | OsLima_12g0015530.02 | OsLima_12g0015530.02,OsLima_12g0015530.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.432422 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0534700 | RBH | 1.319071 | 0.343787 | 1.289284 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34920 | SBH | 0.912458 | 0.236522 | 0.279225 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0534700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015840 | SBH | 0.431466 | 8.147379 | 3.067378 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0016020 | RBH | 0.424211 | 4.660393 | 2.099484 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0016370 | SBH | 1.472260 | 0.840071 | 6.747892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015720 | SBH | 0.317875 | 0.465598 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0015150 | SBH | 16.143864 | 17.862076 | 26.636202 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0278700 | SBH | 3.262631 | 8.219285 | 11.454176 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0015330 | SBH | 0.328623 | 1.470930 | 2.641357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0310800 | SBH | 3.079402 | 8.095809 | 13.8597895 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015560 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015760 | RBH | 0.173504 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015750 | RBH | 6.279427 | 19.506279 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015690 | SBH | 0.712442 | 0.0 | 0.947640 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015850 | RBH | 0.282330 | 3.885233 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015820 | RBH | 0.266799 | 0.345304 | 0.558680 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0015470 | SBH | 1.531822 | 10.896912 | 4.944697 |
