Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_12g0106600 | OGI:12000980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr12:350723-355072 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCCAAACCCAACCCAAAAATATCACTGCTTGGACGGAGACCACACCACAGTCCACAGTCACACGCTCGCGCGGCATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTAAGGACCTTAATTGCTTCCTCACTTACTACTTGTAATTGTCCCTTCATTCTATACAAATCTACATTTACCGCACAAGAAAAATTATATCCCCTTTTGGACTGGAGTGGAGAGTGAGCTCCTCAATTTCTTGCGTCGGTTCTTGACAATGAAATAGGGAAAAATATTCTTTCTATGAAATTACATGCTACGATGACTTCAATTCTGAACTCAGAATATCTGTTTCCGCTGTCTTATGTTGTGAAGAAACTTATTTCTTACACATTTACATTCTTATTTGCTACAAAAATGTTGATCACGATACTAATTCACTTGGCGGTCTCCAACTCATTCACCAGGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAAGTAACCAATCTGCACATCTTATTTGCTTTTTAAAATCTTTCCTTCTTGTTTGCACACTACTGATTAGTGTTTAGTTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGTACGTAAGCTAATTTATTTCAGTATTCAGTTATCTAGGATTTATCTGTTCTCTGAAACATGGTTGTTGATATCTAAAATCGTGTGTAGAACTATCAGCTAGGTGGGTCAAGTGCCACATTTTTTGTCGTGTTTTTATGTATTCATCTTGATGTATATTACTATTACTTCAAAAATGTTTCCAGACCTATTCTATGTGCTTTATTAGTCAAGTTTTCAGCTGATAATAAGGAATCAAAACAACAGTCCTTGATCAATGTGTGAATATGAAGCCAAACTAGAATTTACATTAAAATAATAGCATGACACTATAACAATATTTGGACAAAGTTTGTACCGTAAGCATATTACTTATTTATATGGATACCAGCATATTACAGAGCACAAAATATTTACCTAACGGGCCCTTGAAACTGATCACCCTAAAGGCATTAGCCCATTAATAAAATTTTGGGGGACCAAATTTAGTCTGCAACACCTACTCTCCTTTGGTTTATTCATTTCAAACATAGTGAGCTTAAGGCTACGTAACCTTGGAATTATTCTAAACAATCTTTATTACAGATCTAGCAAGTTCTTAATACTCTTGCTTCAACATAAGTTCTCTATACAACCTACACAGGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGGTAAGACAATGTATGCAAACTCTTCTGGATGAAATAATTGGTTTTAGGGTGCTTTTCAATTCTTCCGTCTTCCATTTGGACTTGCTAGTTGCTTTCAATCTGGTATTTGAATACCAACACTTCTTTTTAGATGAAATACCTTCACTACTTGTTTCAGTGCATGTGTAAATTCTCATGATACAATTTGATTGATAGTATTTCTCACATGCATCTTTTAGTTCTTATAACTATGTTTTTAGTGTTATTTATATGTTCTGTGCTGGCTGTTAAGTTCAAAATAACTTAAATTTCTGAGCATGTGTTCTGAAATTCAGCCTGATGCATATGATCTGCTGTGGTTATTCAAGTATAGTTACTTATTTTATTGTTACTATGGTTTGTTTCTTGTTTAAGACAATAAATTTATTCGACTCAAATTATAAGAAACTAATACTCTGGTGCTTACAGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATGTTGAACTTACTGTGAGACTTTACAACAAATTTACCTTTTCTTTCAATTGTAGTCTCTTCACTTATCTCAATATTTTCTATAAGTTCTCATAGATCCCTGATCTATTTTTCATAATTATCTGCATGTATTTAGGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTTGGTCAATATTCCTCATGTTGATTTCCAAAGACTACAAATGGTGGTCTTGCTTCGTAAGAAAACGTTGATCTAAATGAACAGATGAAACTATTGATAAGCTCCAAGTCCATTTAGTACTTGCTCTATTAAACAAGTTTCATCTTGCTGCAATTTATCTCTATTAAACAAAAAAAAAAACACTTTAACATACACCAATACATGATTCTCTAGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGTGTGTACATTTACAGGAACAGACCTTTAGTTTCTAGCCTCTAATTGTGTTCACTTGTAAAGTGTTCATAATATAATGCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGGCAAGGAGACATTATAATATTATGTTCTCAAATGATTGACATTTATCCTCTTATTTTCGCTCTTGCTATAAGATCCTCATACTATTTTTTTATGTAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGGTAATGACTATTCTGAGAAGTCAATACTTGATTTACCAAGTGATATGCAATGGTTTTATAGTAATTGGCTGATGGATTTTTGCAGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACAGTTCAGATTTCTATTCTTATCATGTCCCATTGTATAGTTTATCAGTTATAGCTGCAGCATCCTAATCACATTAGTATTTTTCTTGTTTCAGTTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTAGTAATGGATGATTGCTTAGGATGTAGGCCAATTCTGTTAGAAAGCAAAGTTGTTGACTTGAGTGATTTTGTGGTTTTTCAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGCATAATTATTAGATTAACATCTTACAGCAAACATGTAAAGGCAACTACACAGGAAAGGCAGATAGCTGCTGGTCATAGTTCAGAATAAGATTTTCTTTGGGAGATGACAAATGTATGTAGTGATTTGGTTACAAGAAGTACAGATACAGATACTTGTTGGTGGCTCTAGATAGATAGCTCTCTCTTTGTTTTGACTGCTATAGGAAGTTGATTCGACTTGTACAGTGCTGTCCTATAGAATGGACAAAGCTGATAGCTGATGTACACAGGAACATTCAGAATCATTCATCCATGTAAATAAGTCTTTCTTTGGGAAAAGTGTACTGTTTAGTGAAC
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| CDS seq | ATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAATTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACATTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAA
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| Protein seq | MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE |
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| Function | Protein DETOXIFICATION 44, chloroplastic [UniProtKB/Swiss-Prot:Q84K71] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0106600 | OsNip_12t0106600-01 | Chr12 | 350772 | 355072 | + | RAP2018-11-26 | ||
| CDS seq | ATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAATTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACATTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCGCTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAA
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| Protein seq | MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_12g0106600 | OsNip_12t0106600-02 | Chr12 | 350723 | 355069 | + | IsoSeq | ||
| CDS seq | ATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTTCAACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCT
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| Protein seq | MEERRCSGAGGSWLMRLVWKSSPSPCLLCSPSPPTPSRRSSTPPSLAMSVQLNLLPLEYPFLSSIWYPSCSMSHCSTSPHPLLPSSRQWMPIITA |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.603232 | 3.389553 | 0.939900 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01580 | RBH | 3.169278 | 2.259569 | 0.241680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0106600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000370 | RBH | 0.466770 | 1.289501 | 3.400034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000550 | RBH | 0.387541 | 0.000000 | 0.210253 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000520 | RBH | 1.857147 | 0.000000 | 2.651340 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000390 | RBH | 0.323015 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000520 | RBH | 9.965149 | 3.288811 | 3.437296 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0005300 | SBH | 2.7424815 | 1.8662285 | 2.1333545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0000520 | SBH | 0.952387 | 0.762886 | 0.653226 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0005600 | RBH | 4.7724805 | 2.772763 | 5.88053 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000380 | RBH | 0.671197 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000520 | RBH | 0.686162 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000530 | RBH | 9.425825 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000490 | RBH | 0.721483 | 0.0 | 0.440970 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0000530 | RBH | 0.820543 | 1.393129 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000390 | RBH | 0.550500 | 0.000000 | 0.450249 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000530 | RBH | 1.871704 | 0.000000 | 3.147105 |
