Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_12g0000380 | OGI:12000980 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr12:258885-263222 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accacagtccacagtcacacgctcgcgcggcatgacggcgacctcgccgccgatgaggtctgtcgccgccgccgcgcttgtcctaacccccactccaacgctcaaccgtctctcctttcccttcgcccaccgtcactgccctagtactgctgctcctcggtggaggcccgcgcggtgccgcgggaagccggcggtggaggacgtggtacacgacgacgaggaggagacctggcggcgggaggccaaccccgagaggaaggatggaggagaggagatgctcgggcgcgggtggttcatggttgatgagattggtatggaaatcctcaccatcgccttgcctgctgtgctcgccctcgccgccgaccccatcacggcgctcatcgacaccgccttcgttggccatgtcggtaaggaccttaattgcttcctcacttactacttgtaattgtcccttcattctatacaaatctacatttaccgcacaagaaaaattatatccccttttggactggagtggagagtgagctcctcaatttcttgcgtcggttcttgacaatgaaatagggaaaaatattctttctatgaaattacatgctacgatgacttcaattctgaactcagaatatctgtttccgctgtcttatgttgtgaagaaacttatttcttacacatttacattcttatttgctacaaaaatgttgatcacgatactaattcacttggcggtctccaactcattcaccaggttcaactgaacttgctgccgttggagtatccatttctatcttcaatttggtatccaagctgctcaatgtcccattgctcaacgtcaccacatcctttgttgccgagcagcaggcagtggatgccgattataacagctccgtagaaaagtaaccaatctgcacatcttatttgctttttaaaatctttccttcttgtttgcacactactgattagtgtttagttctcacataggagaagagatttccatttcacaagagaaagcaggtgaacaaaggaagtttcttccagctgtctcaacatccttggctctagctgctggcatcggattgatggaaaccgtggcactgatccttgggtctgggacactactggacatcgtcggtgtacctgtcgtacgtaagctaatttatttcagtattcagttatctaggatttatctgttctctgaaacatggttgttgatatctaaaatcgtgtgtagaactatcagctaggtgggtcaagtgccacaTtttttgtcgtgtttttatgtattcatcttgatgtatattactattacttcaaaaatgtttccagacctattctatgtgctttattagtcaagttttcagctgataataaggaatcaaaacaacagtccttgatcaatgtgtgaatatgaagccaaactagaatttacattaaaataatagcatgacactataacaatatttggacaaagtttgtaccgtaagcatattacttatttatatggataccagcatattacagagcacaaaatatttacctaacgggcccttgaaactgatcaccctaaaggcattagcccattaataaaattttgggggaccaaatttagtctgcaacacctactctcctttggtttattcatttcaaacatagtgagcttaaggctacgtaaccttggaattattctaaacaatctttattacagatctagcaagttcttaatactcttgcttcaacataagttctctatacaacctacacaggattcaccgatgcgtataccagctgagcaattccttactttaagggcatatggtgcaccgccagtcatagtagcgcttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgctgtgggtaagacaatgtatgcaaactcttctggatgaaataattggttttagggtgcttttcaattcttccgtcttccatttggacttgctagttgctttcaatctggtatttgaataccaacacttcTttttagatgaaataccttcactacttgtttcagtgcatgtgtaaattctcatgatacaatttgattgatagtatttctcacatgcatcttttagttcttataactatgtttttagtgttatttatatgttctgtgctggctgttaagttcaaaataacttaaatttctgagcatgtgttctgaaattcagcctgatgcatatgatctgctgtggttattcaagtatagttacttattttattgttactatggtttgtttcttgtttaagacaataaatttattcgactcaaattataagaaactaatactctggtgcttacagttgctggtaacctagtgaatgcattgctggatgctatatttatttttccacttggtctaggagtaagtggcgctgcattggcaacagtgacttctgagtatgttgaacttactgtgagactttacaacaaatttaccttttctttcaattgtagtctcttcacttatctcaatattttctataagttctcatagatccctgatctatttttcataattatctgcatgtatttaggtatttgacagcgttcatcctcctctggaagttgaatagcaaaatagttctgttctcatggaatattgtttctggagacatcatccactacctaaaatctggttggtcaatattcctcatgttgatttccaaagactacaaatggtggtcttgcttcgtaagaaaacgttgatctaaatgaacagatgaaactattgataagctccaagtccatttagtacttgctctattaaacaagtttcatcttgctgcaatttatctctattaaacaaaaaaaaacactttaacatacaccaatacatgattctctaggtgcgctgctaattgcaagaaccatagcagtagtcctgacattcactgtgtcgacatccctggctgccagggaagggtctgttccaatggctggctatgagatatgtttgcaagtgtggctaacgatttctctactcaatgatgcactagctcttgctggtcaggtgtgtacatttacaggaacagacctttagtttctagcctctaattgtgttcacttgtaaagtgttcataatataatgcaggctctacttgcaagtgaatacgcaaaaggaaactataagaaagcccgtattgtcttatacagagttctgcaggcaaggagacattataatattatgttctcaaatgattgacatttatcctcttattttcgctcttgctataagatcctcatactatttttttatgtagattggaggcgtaactggtgcagcactttctacaaccttactccttgggtttggatatttgtccatgctgtttacagatgatgcagcagttttagacgttgcccaaactggagtctgggtaatgactattctgagaagtcaatacttgatttaccaagtgatatgcaatggttttatagtaattggctgatggatttttgcagtttgtcactgtttctcaaccaataaatgctgttgcgtttgtgatggatgggctctactatggtgtttctgactttgctttcgtggcatactctacagttcagatttctattcttatcatgtcccattgtatagtttatcagttatagctgcagcatcctaatcacattagtatttttcttgtttcagttatttgcgggagctatctcatcagcagtactgcttgtggccgctcctaagtttggtcttggtggcgtctgggctggccttactctatttatgagtttgcgagcaattgctgggttctggaggtagtaatggatgattgcttaggatgtaggccaattctgttagaaagcaaagttgttgacttgagtgattttgtggtttttcaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaaagaaaaaagatagtgatgcataattattagattaacatcttacagcaaacatgtaaaggcaactacacaggaaaggcagatagctgctggtcatagttcagaataagattttctttgggagatgacaaatgtatgtagtgatttggttacaagaagtacagatacagatacttgttggtggctctagatagatagctctctctttgttttgactgctataggaagttgattcgacttgtacagtgctgtcctatagaatggacaaagctgatagctgatgtacacaggaacattcagaatcattcatccatgtaaataagtctttctttgggaaaagtgtactgtttagtgaacaattcttctctctttatatataccttttggaatg
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| CDS seq | atgacggcgacctcgccgccgatgaggtctgtcgccgccgccgcgcttgtcctaacccccactccaacgctcaaccgtctctcctttcccttcgcccaccgtcactgccctagtactgctgctcctcggtggaggcccgcgcggtgccgcgggaagccggcggtggaggacgtggtacacgacgacgaggaggagacctggcggcgggaggccaaccccgagaggaaggatggaggagaggagatgctcgggcgcgggtggttcatggttgatgagattggtatggaaatcctcaccatcgccttgcctgctgtgctcgccctcgccgccgaccccatcacggcgctcatcgacaccgccttcgttggccatgtcggttcaactgaacttgctgccgttggagtatccatttctatcttcaatttggtatccaagctgctcaatgtcccattgctcaacgtcaccacatcctttgttgccgagcagcaggcagtggatgccgattataacagctccgtagaaaattctcacataggagaagagatttccatttcacaagagaaagcaggtgaacaaaggaagtttcttccagctgtctcaacatccttggctctagctgctggcatcggattgatggaaaccgtggcactgatccttgggtctgggacactactggacatcgtcggtgtacctgtcgattcaccgatgcgtataccagctgagcaattccttactttaagggcatatggtgcaccgccagtcatagtagcgcttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgctgtggttgctggtaacctagtgaatgcattgctggatgctatatttatttttccacttggtctaggagtaagtggcgctgcattggcaacagtgacttctgagtatttgacagcgttcatcctcctctggaagttgaatagcaaaatagttctgttctcatggaatattgtttctggagacatcatccactacctaaaatctggtgcgctgctaattgcaagaaccatagcagtagtcctgacattcactgtgtcgacatccctggctgccagggaagggtctgttccaatggctggctatgagatatgtttgcaagtgtggctaacgatttctctactcaatgatgcactagctcttgctggtcaggctctacttgcaagtgaatacgcaaaaggaaactataagaaagcccgtattgtcttatacagagttctgcagattggaggcgtaactggtgcagcactttctacaaccttactccttgggtttggatatttgtccatgctgtttacagatgatgcagcagttttagacgttgcccaaactggagtctggtttgtcactgtttctcaaccaataaatgctgttgcgtttgtgatggatgggctctactatggtgtttctgactttgctttcgtggcatactctacattatttgcgggagctatctcatcagcagtactgcttgtggccgctcctaagtttggtcttggtggcgtctgggctggccttactctatttatgagtttgcgagcaattgctgggttctggaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaa
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| Protein seq | MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIHYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE |
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| Function | Protein DETOXIFICATION 44, chloroplastic [UniProtKB/Swiss-Prot:Q84K71] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0000380 | OsLima_12g0000380.01 | Chr12 | 258885 | 263222 | + | NAM | ||
| CDS seq | atgacggcgacctcgccgccgatgaggtctgtcgccgccgccgcgcttgtcctaacccccactccaacgctcaaccgtctctcctttcccttcgcccaccgtcactgccctagtactgctgctcctcggtggaggcccgcgcggtgccgcgggaagccggcggtggaggacgtggtacacgacgacgaggaggagacctggcggcgggaggccaaccccgagaggaaggatggaggagaggagatgctcgggcgcgggtggttcatggttgatgagattggtatggaaatcctcaccatcgccttgcctgctgtgctcgccctcgccgccgaccccatcacggcgctcatcgacaccgccttcgttggccatgtcggttcaactgaacttgctgccgttggagtatccatttctatcttcaatttggtatccaagctgctcaatgtcccattgctcaacgtcaccacatcctttgttgccgagcagcaggcagtggatgccgattataacagctccgtagaaaattctcacataggagaagagatttccatttcacaagagaaagcaggtgaacaaaggaagtttcttccagctgtctcaacatccttggctctagctgctggcatcggattgatggaaaccgtggcactgatccttgggtctgggacactactggacatcgtcggtgtacctgtcgattcaccgatgcgtataccagctgagcaattccttactttaagggcatatggtgcaccgccagtcatagtagcgcttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgctgtggttgctggtaacctagtgaatgcattgctggatgctatatttatttttccacttggtctaggagtaagtggcgctgcattggcaacagtgacttctgagtatttgacagcgttcatcctcctctggaagttgaatagcaaaatagttctgttctcatggaatattgtttctggagacatcatccactacctaaaatctggtgcgctgctaattgcaagaaccatagcagtagtcctgacattcactgtgtcgacatccctggctgccagggaagggtctgttccaatggctggctatgagatatgtttgcaagtgtggctaacgatttctctactcaatgatgcactagctcttgctggtcaggctctacttgcaagtgaatacgcaaaaggaaactataagaaagcccgtattgtcttatacagagttctgcagattggaggcgtaactggtgcagcactttctacaaccttactccttgggtttggatatttgtccatgctgtttacagatgatgcagcagttttagacgttgcccaaactggagtctggtttgtcactgtttctcaaccaataaatgctgttgcgtttgtgatggatgggctctactatggtgtttctgactttgctttcgtggcatactctacattatttgcgggagctatctcatcagcagtactgcttgtggccgctcctaagtttggtcttggtggcgtctgggctggccttactctatttatgagtttgcgagcaattgctgggttctggaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaa
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| Protein seq | MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIHYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_12g0000380 | OsLima_12g0000380.02 | Chr12 | 258885 | 263188 | + | NAM | ||
| CDS seq | atgacggcgacctcgccgccgatgaggtctgtcgccgccgccgcgcttgtcctaacccccactccaacgctcaaccgtctctcctttcccttcgcccaccgtcactgccctagtactgctgctcctcggtggaggcccgcgcggtgccgcgggaagccggcggtggaggacgtggtacacgacgacgaggaggagacctggcggcgggaggccaaccccgagaggaaggatggaggagaggagatgctcgggcgcgggtggttcatggttgatgagattggtatggaaatcctcaccatcgccttgcctgctgtgctcgccctcgccgccgaccccatcacggcgctcatcgacaccgccttcgttggccatgtcggttcaactgaacttgctgccgttggagtatccatttctatcttcaatttggtatccaagctgctcaatgtcccattgctcaacgtcaccacatcctttgttgccgagcagcaggcagtggatgccgattataacagctccgtagaaaattctcacataggagaagagatttccatttcacaagagaaagcaggtgaacaaaggaagtttcttccagctgtctcaacatccttggctctagctgctggcatcggattgatggaaaccgtggcactgatccttgggtctgggacactactggacatcgtcggtgtacctgtcgattcaccgatgcgtataccagctgagcaattccttactttaagggcatatggtgcaccgccagtcatagtagcgcttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgctgtggttgctggtaacctagtgaatgcattgctggatgctatatttatttttccacttggtctaggagtaagtggcgctgcattggcaacagtgacttctgagtatttgacagcgttcatcctcctctggaagttgaatagcaaaatagttctgttctcatggaatattgtttctggagacatcatccactacctaaaatctggtgcgctgctaattgcaagaaccatagcagtagtcctgacattcactgtgtcgacatccctggctgccagggaagggtctgttccaatggctggctatgagatatgtttgcaagtgtggctaacgatttctctactcaatgatgcactagctcttgctggtcaggctctacttgcaagtgaatacgcaaaaggaaactataagaaagcccgtattattggaggcgtaactggtgcagcactttctacaaccttactccttgggtttggatatttgtccatgctgtttacagatgatgcagcagttttagacgttgcccaaactggagtctggtttgtcactgtttctcaaccaataaatgctgttgcgtttgtgatggatgggctctactatggtgtttctgactttgctttcgtggcatactctacattatttgcgggagctatctcatcagcagtactgcttgtggccgctcctaagtttggtcttggtggcgtctgggctggccttactctatttatgagtttgcgagcaattgctgggttctggaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaa
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| Protein seq | MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIHYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVAAPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr12 | 262069 | 262188 | + | OsLima_12g0000380.01 | OsLima_12g0000380.02,OsLima_12g0000380.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.671197 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0106600 | RBH | 4.603232 | 3.389553 | 0.939900 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01580 | RBH | 3.169278 | 2.259569 | 0.241680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0106600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000370 | RBH | 0.466770 | 1.289501 | 3.400034 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000550 | RBH | 0.387541 | 0.000000 | 0.210253 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000520 | RBH | 1.857147 | 0.000000 | 2.651340 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000390 | RBH | 0.323015 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000490 | RBH | 10.863960 | 0.000000 | 2.687769 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0005300 | SBH | 2.7424815 | 1.8662285 | 2.1333545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000450 | RBH | 0.347514 | 0.075767 | 0.237825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0005600 | RBH | 4.7724805 | 2.772763 | 5.88053 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000390 | RBH | 0.306162 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000490 | RBH | 0.684720 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000490 | RBH | 7.982745 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000490 | RBH | 0.721483 | 0.0 | 0.440970 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000490 | RBH | 1.011248 | 1.092079 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000390 | RBH | 0.550500 | 0.000000 | 0.450249 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0000530 | RBH | 1.871704 | 0.000000 | 3.147105 |
