Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsN22_12G000390		OGI:12000980 \| 16/16			N22 \| OsN22RS2 \| Gramene(+IsoSeq)			Chr12:317557-322298		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		-
DNA seq		ACCACAGTCCACAGTCACACGCTCGCGCGGCATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTAAGGACCTTAATTGCTTCCTCACTTACTACTTGTAATTGTCCCTTCATTCTATACAAATCTACATTTACCGCACAAGAAAAATTATATCCCCTTTTGGACTGGAGTGGAGAGTGAGCTCCTCAATTTCTTGCGTCGGTTCTTGACAATGAAATAGGGAAAAATATTCTTTCTATGAAATTACATGCTACGATGACTTCAATTCTGAACTCAGAATATCTGTTTCCGCTGTCTTATGTTGTGAAGAAACTTATTTCTTACACATTTACATTCTTATTTGCTACAAAAATGTTGATCACGATACTAATTCACTTGGCGGTCTCCAACTCATTCACCAGGTTCGACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAAGTAACCAATCTGCACATCTTATTTGCTTTTTAAAATCTTTCCTTCTTGTTTGCACACTACTGATTAGTGTTTAGTTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGTACGTAAGCTAATTTATTTCAGTATTCAGTTATCTAGGATTTATCTGTTCTCTGAAACATGGTTGTTGATATCTAAAATCGTGTGTAGAACTATCAGCTAGGTGGGTCAAGTGCCACATTTTTTGTCGTGTTTTTATGTATTCATCTTGATGTATATTACTATTACTTCAAAATGTTTCCAGACCTATTCTATGTGCTTTATTAGTCAAGTTTTCAGCTGATAATAAGGAATCAAAACAACAGTCCTTGATCAATGCGTGAATATGAAGCCAAACTAGAATTTACATTAAAATAATAGCATGACACTATAACAATATTTGGACAAAGTTTGTACCGTAAGCATATTACTTATTTATATGGATACCAGCATATTACAGAGCACAAAATATTTACCTAACGGGCCCTTGAAACTGATCACCCTAAAGGCATTAGCCCATTAATAAAATTTTGGGGGACCAAATTTAGTCTGCAACACCTACTCTCCTTTGGTTTATTCATTTCAAACATAGTGAGCTTAAGGCTACGTAACCTTGGAATTATTCTAAACAATCTTTATTACAGATCTAGCAAGTTCTTAATACTCTTGCTTCAACATAAGTTCTCTATACAACCTACACAGGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGGTAAGACAATGTATGCAAACTCTTCTGGATGAAATAATTGGTTTTAGGGTGCTTTTCAATTCTTCCGTCTTCCATTTGGACTTGCTAGTTGCTTTCAATCTGGTATTTGAATACCAACACTTCTTTTTAGATGAAATACCTTCACTACTTGTTTCAGTGCATGTGTAAATTCTCATGATACAATTTGATTGATAGTATTTCTCACATGCATCTTTTAGTTCTTATAACTATGTTTTTAGTGTTATTTATATGTTCTGTGCTGGCTGTTAAGTTCAAAATAACTTAAATTTCTGAGCATGTGTTCTGAAATTCAGCCTGATGCATATGATCTGCTGTGGTTATTCAAGTATAGTTACTTATTTTATTGTTACTATGGTTTGTTTCTTGTTTAAGACAATAAATTTATTCGACTCAAATTATAAGAAACTAATACTCTGGTGCTTACAGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATGTTGAACTTACTGTGAGACTTTACAACAAATTTACCTTTTCTTTCAATTGTAGTCTCTTCACTTATCTCAATATTTTCTATAAGTTCTCATAGATCCCTGATCTATTTTTCATAATTATCTGCATGTATTTAGGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTTGGTCAATATTCCTCATGTTGATTTCCAAAGACTACAAATGGTGGTCTTGCTTCGTAAGAAAACGTTGATCTAAATGAACAGATGAAACTATTGATAAGCTCCAAGTCCATTTAGTACTTGCTCTATTAAACAAGTTTCATCTTGCTGCAATTTATCTCTATTAAACAAAAAAAAAAACACTTTAACATACACCAATACATGATTCTCTAGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGTGTGTACATTTACAGGAACAGACCTTTAGTTTCTAGCCTCTAATTGTGTTCACTTGTAAAGTGTTCATAATATAATGCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGGCAAGGAGACATTATAATATTATGTTCTCAAATGATTGACATTTATCCTCTTATTTTCGCTCTTGCTATAAGATCCTCATACTATTTTTTTATGTAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGGTAATGACTATTCTGAGAAGTCAATACTTGATTTACCAAGTGATATGCAATGGTTTTATAGTAATTGGCTGATGGATTTTTGCAGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACAGTTCAGATTTCTATTCTTATCATGTCCCATTGTATAGTTTATCAGTTATAGCTGCAGCATCCTAATCACATTAGTATTTTTCTTGTTTCAGTTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCACTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTAGTAATGGATGATTGCTTAGGATGTAGGCCAATTCTGTTAGAAAGCAAAGTTGTTGACTTGAGTGATTTTGTGGTTTTTCAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAAAGAAAAAAGATAGTGATGTATAATTATTAGATTAACATCTTACAGCAAACATGTAAAGGCAACTACACAGGAAAGGCAGATAGCTGCTGGTCATAGTTCAGAATAAGATTTTCTTTGGGAGATGACAAATGTATGTAGTGATTTGGTTACAAGAAGTACAGATACAGATACTTGTTGGTGGCTCTAGATAGATAGCTCTCTCTTTGTTTTGACTGCTATAGGAAGTTGATTCGACTTGTACAGTGCTGTCCTATAGAATGGACAAAGCTGATAGCTGATGTACACAGGAACATTCAGAATCATTCATCCATGTAAATAAGTCTTTCTTTGGGAAAAGTGTACTGTTTAGTGAACAATTCTTCTCTCTTTATATATACCTTTTGGAATGAAGTTATGTCCTGGGATTTTGGTACGGATCAGCAACATTAACATATACTACTGCGTTACTGCCCCAGGCAGGCCACAAAGATTGTTCAGTGGTTTGACATATTCCGATGCGACATAAGGTATTGATTATTTTGTTGTTGCAGTTATTTGCGGGAGCTGTCTCGTCAGCAGTACTGCTTGCTGTCGCTCCTAATAAGCTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCAAGCAATTGCTGGGTTCTGGAGGTAGTAATGGATGATTCATTTGGAAGTAGACCACTTTTATTAGAAAACCAAGTTGGTAACTTGAGTGATTTTGTGGTTTTTCAGGTTAAGAAGCAAAGATGGACCATGGAAAATAATCTGGTCTGTAACTGAGTGA More
CDS seq		ATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTTCGACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAATTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACATTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCACTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAA More
Protein seq		MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVATPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE
Function		Protein DETOXIFICATION 44, chloroplastic [UniProtKB/Swiss-Prot:Q84K71]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_12G000390	OsN22_12G000390_01	Chr12	317557	321915	+	NAM
CDS seq	ATGACGGCGACCTCGCCGCCGATGAGGTCTGTCGCCGCCGCCGCGCTTGTCCTAACCCCCACTCCAACGCTCAACCGTCTCTCCTTTCCCTTCGCCCACCGTCACTGCCCTAGTACTGCTGCTCCTCGGTGGAGGCCCGCGCGGTGCCGCGGGAAGCCGGCGGTGGAGGACGTGGTACACGACGACGAGGAGGAGACCTGGCGGCGGGAGGCCAACCCCGAGAGGAAGGATGGAGGAGAGGAGATGCTCGGGCGCGGGTGGTTCATGGTTGATGAGATTGGTATGGAAATCCTCACCATCGCCTTGCCTGCTGTGCTCGCCCTCGCCGCCGACCCCATCACGGCGCTCATCGACACCGCCTTCGTTGGCCATGTCGGTTCGACTGAACTTGCTGCCGTTGGAGTATCCATTTCTATCTTCAATTTGGTATCCAAGCTGCTCAATGTCCCATTGCTCAACGTCACCACATCCTTTGTTGCCGAGCAGCAGGCAGTGGATGCCGATTATAACAGCTCCGTAGAAAATTCTCACATAGGAGAAGAGATTTCCATTTCACAAGAGAAAGCAGGTGAACAAAGGAAGTTTCTTCCAGCTGTCTCAACATCCTTGGCTCTAGCTGCTGGCATCGGATTGATGGAAACCGTGGCACTGATCCTTGGGTCTGGGACACTACTGGACATCGTCGGTGTACCTGTCGATTCACCGATGCGTATACCAGCTGAGCAATTCCTTACTTTAAGGGCATATGGTGCACCGCCAGTCATAGTAGCGCTTGCAGCACAAGGTGCTTTTCGTGGATTCATGGATACAAAGACACCGTTGTTTGCTGTGGTTGCTGGTAACCTAGTGAATGCATTGCTGGATGCTATATTTATTTTTCCACTTGGTCTAGGAGTAAGTGGCGCTGCATTGGCAACAGTGACTTCTGAGTATTTGACAGCGTTCATCCTCCTCTGGAAGTTGAATAGCAAAATAGTTCTGTTCTCATGGAATATTGTTTCTGGAGACATCATCCGCTACCTAAAATCTGGTGCGCTGCTAATTGCAAGAACCATAGCAGTAGTCCTGACATTCACTGTGTCGACATCCCTGGCTGCCAGGGAAGGGTCTGTTCCAATGGCTGGCTATGAGATATGTTTGCAAGTGTGGCTAACGATTTCTCTACTCAATGATGCACTAGCTCTTGCTGGTCAGGCTCTACTTGCAAGTGAATACGCAAAAGGAAACTATAAGAAAGCCCGTATTGTCTTATACAGAGTTCTGCAGATTGGAGGCGTAACTGGTGCAGCACTTTCTACAACCTTACTCCTTGGGTTTGGATATTTGTCCATGCTGTTTACAGATGATGCAGCAGTTTTAGACGTTGCCCAAACTGGAGTCTGGTTTGTCACTGTTTCTCAACCAATAAATGCTGTTGCGTTTGTGATGGATGGGCTCTACTATGGTGTTTCTGACTTTGCTTTCGTGGCATACTCTACATTATTTGCGGGAGCTATCTCATCAGCAGTACTGCTTGTGGCCACTCCTAAGTTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCGAGCAATTGCTGGGTTCTGGAGGTTAGGGAGCAAAGGTGGACCATGGAAAATAATCTGGTCTGAAACTGAGTAA More
Protein seq	MTATSPPMRSVAAAALVLTPTPTLNRLSFPFAHRHCPSTAAPRWRPARCRGKPAVEDVVHDDEEETWRREANPERKDGGEEMLGRGWFMVDEIGMEILTIALPAVLALAADPITALIDTAFVGHVGSTELAAVGVSISIFNLVSKLLNVPLLNVTTSFVAEQQAVDADYNSSVENSHIGEEISISQEKAGEQRKFLPAVSTSLALAAGIGLMETVALILGSGTLLDIVGVPVDSPMRIPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVVAGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNSKIVLFSWNIVSGDIIRYLKSGALLIARTIAVVLTFTVSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARIVLYRVLQIGGVTGAALSTTLLLGFGYLSMLFTDDAAVLDVAQTGVWFVTVSQPINAVAFVMDGLYYGVSDFAFVAYSTLFAGAISSAVLLVATPKFGLGGVWAGLTLFMSLRAIAGFWRLGSKGGPWKIIWSETE More

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsN22_12G000390	OsN22_12G000390_02	Chr12	321629	322298	+	NAM
CDS seq	ATGACAAATTTATTTGCGGGAGCTGTCTCGTCAGCAGTACTGCTTGCTGTCGCTCCTAATAAGCTTGGTCTTGGTGGCGTCTGGGCTGGCCTTACTCTATTTATGAGTTTGCAAGCAATTGCTGGGTTCTGGAGGTTAAGAAGCAAAGATGGACCATGGAAAATAATCTGGTCTGTAACTGAGTGA
Protein seq	MTNLFAGAVSSAVLLAVAPNKLGLGGVWAGLTLFMSLQAIAGFWRLRSKDGPWKIIWSVTE

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.550500	0.000000	0.450249

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_12g0106600	RBH	4.603232	3.389553	0.939900
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os12g01580	RBH	3.169278	2.259569	0.241680
Nipponbare \| IRGSP 1.0 \| RAP-db	Os12g0106600	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_12g0000370	RBH	0.466770	1.289501	3.400034
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_12g0000550	RBH	0.387541	0.000000	0.210253
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_12g0000520	RBH	1.857147	0.000000	2.651340
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_12g0000390	RBH	0.323015	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_12g0000490	RBH	10.863960	0.000000	2.687769
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_12G0005300	SBH	2.7424815	1.8662285	2.1333545
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_12g0000450	RBH	0.347514	0.075767	0.237825
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_12G0005600	RBH	4.7724805	2.772763	5.88053
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_12g0000380	RBH	0.671197	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_12g0000490	RBH	0.684720	0.0	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_12g0000490	RBH	7.982745	0.000000	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_12g0000490	RBH	0.721483	0.0	0.440970
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_12g0000490	RBH	1.011248	1.092079	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_11G000540	SBH	2.273106	0.000000	4.780027
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_12g0000530	RBH	1.871704	0.000000	3.147105

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.