Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLaMu_11g0000530 | OGI:12000980 | 16/16 | LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | Chr11:475627-479966 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ccagacccaacacagaaaatatcactgctcgcaccacacacccgggcggcatggcggcgacctcgccgccgatgacgtctgtcgccgccgccgcgcttgtcttaaccccttctccagctctcaaccgtatatcctttcccttctcccgtcgtcactgccgtagtgctgctcctcctcctcggtggaggcccacgcggtgccgcgggaagcccggtgtcacggaagttgtagccgagaaggagacttcgccggatggcgaagaggaggaggtgcgcgggcgcggatggttcatggttgatgagattggtatggacatcctcaccatcgccttgcctgctgtgctcgccctcgccgccaaccccatcacggctctcgtcgacaccgccttcgttggccatgtcggtaaggatcttgcttcctcacttgtatcttttcttttacttctttctacatttcctttgtggagtgtaatcccaattgcttgggtaacttcttgtggaaatgaaataggcaaactgggttggcactcttgataaataggggaaattatcctttctatattaaccatttcctataagaaaaatgtttccgttactttgagaaatggaaactaatgagtgaaggacttgtgtgtactttggatgatcggtatgatgagttcgaattgcggatgttttacaagaggagtacacatgcttgtatctgttttttctctgttatatgttgtgaagaaacttatttcttacaagcttactcgctacagaaatgttggtcataatctttattcagttgacgggcttcaattcattcatcaggttcgactgaacttgctgccgttggagtatccatttctatcttcaatctggtatgcaagctgctcaatgtgccattgctcaatgtcaccacatcctttgttgccgagcagcaggcagtggaagcagctgaaagtaagcaattcgcaggtcttattttctttgttataaaacttaaagccatcttgcttgtttgcataacactgattagtttttagtcctcgcataggaaatgaaatttcaataccccaagagaaagcaagtgaacaaaggaggtttcttccagcggtctcaacatccttggctctagctgctggcataggattgatggaaatggtggcactgatacttgggtctgggacactaatggacatcgttggtatacctgtcgtacgtaagactaatttatttctattagtagatgtctgagatttatctcttctctgaaatatggtgctagtggtgggtttttctcttgttagggtgtgtcatggttgtggatatctagagtttaaatcctgtgtagagttgacagctaggtgagtcaggtgttacattttgtgttccatttgtctgtctgggtattcatcttgatgtatatacacatacttcaaaattgttttcagacctattctatgtgcttcattagtcaagttttcaacagataataaaggatcaaaacaacacagtgtttgatcaacacatgaagacgaaaccaaactagaactatattataccaatatttggacaatgttatattctaagcttgattgattcgtattatttatttattgagattggcatagtacagagcacaaaacaaattacctgatgggcccttaaaacttactaccctaaaaaaggagttatggtaggcattagccaattaacaaaatttgggggacaaaatttagtacacttaacacctgctctcattttgtttattattcatttcaaactttctgagcttaatgctatgtaaccttggaattacactaaataattctatattacaaatccaataagttcttaaatcaatggcttcaatataaattctccgaacaaccttatacaggattcagcgatgcgtgtacctgcagagcaatttcttactttaagggcatatggtgcacctccagtcatagtagcacttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgccgtgggtaagataatttatgcaaactattagagcatgttttctgaaatcctgtctgatgcatacgatctgctatagtgattgcaagtgtagatatacatatttttgttgttaccatttgtcatctttttttaaagcaatagacatatttgacttcaaatgataagaaactaatagtatgatgaatacaggtgttggtaacctagtgaatgcattgctggatgccatatttatttttccacttggtctaggtgtaagtggtgctgcattggcaactgtgacttcagagtatgttgaactcatcataagactttacagaaaattgtcttttctttcatttggagcctcttcacttctttctttaatcagtattcataagcccctaaaggcctaaactatctgcataattttacatgtattcaggtacttgacagcatttatcctcctttggaagctgaacaacaaaattgttctgctctcatggaatatcattggtggagacgttgtccgctacctaaaatcaggttgtccaacatccctcatgttcatttgcaaatacattacaaatgtttgttttgttttcttgtaagagagctttgatatacaatgaaccgataaaaaactatcaatcaattcaactccctttttttttttgaaggcagatcaaatttcattgacctggctttgcaagaaagcctaagcaacaaacagagtcttatacagaaaggaaaaagcaaaaacaattcaactccatttagtactacctctattaaacaagtttcatcttgctgcaatatacctctatgttaacccctttcacatgaatcattctctaggtgcactgctaattgcaagaaccattgcggtagtcctgacattcacactgtcgacatccctggcagccagggaagggtctgttccaatggctggatatgagatatgtttgcaagtgtggttaacaatctctctgctcaatgatgcactagctcttgctggtcaggtgtgtacatttagaggatcatacctttagtttctaggctctaatattttacattggcctgtaaagtattcatgatacaatgcaggctctactcgcaagtgaatacgcaaaaggaaactacaagaaggcccgcgttgtcttatacagagttctccaggtatgaagacattatataatattatgttagcaaattcgtgactatcctcttctttttactcttgcaataagattctcacactgttttatatgtagattggaggcataactggtgtagcacttgctacaatcttgttccttgggtttggatatttgtccttgctgtttacagatgatccagcagttttagatgttgcccaaactggagtctgggtaatgactatcctgagaggtcaaacttgatttatcaagtgttatgcaatgatttttataataatggctgatgaatatttgcagtttgtcactgtttctcaaccgataaatgctgttgcttttgtggccgatgggctctactatggtgtttctgactttgctttcgcggcgtactctacagttcagatttctattcttgtcatattccattgcattgttgtcagttctagctgcagcatcctaatcacataaatatttttgctgtttcagttatttgctggagctgtctcatccgcagtactgcttgtggccgctcctaagtttggtcttggtggaatctgggctggccttgctctatttatgagtttgcgagcaattgctggtctgtggaggtagtaatggatgatttgctttgggtgtaggccaattatgttagaaaaactaatatgttgatttgagtgaTtttgtggttttcaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaaacaaaaaagatagttatgtgtactcaattattcgactaatttcttacagtcaacatctaaaggcaagtacagaacggcaagcaagaaagcagatagctggtagtcattgtccaggacaagattttctttaggagatgacagggtagctcatgtggtgatttggttacaacttacaagtagatatacttgctgctgcctctagatagatagatatagatagatagatagatagatagatagatagatctctttggtgttgactggtataggaagttgattcgacttgtacagtgctgtgttatagtagaatggataccctgtcagtatacaagaaagctgaaagctcatagatacaaacacattcagagccatccgtccatgtaaataagtgaatcatatataagtgaattcttcctctctgtttat
More
|
||||||||||
| CDS seq | atggcggcgacctcgccgccgatgacgtctgtcgccgccgccgcgcttgtcttaaccccttctccagctctcaaccgtatatcctttcccttctcccgtcgtcactgccgtagtgctgctcctcctcctcggtggaggcccacgcggtgccgcgggaagcccggtgtcacggaagttgtagccgagaaggagacttcgccggatggcgaagaggaggaggtgcgcgggcgcggatggttcatggttgatgagattggtatggacatcctcaccatcgccttgcctgctgtgctcgccctcgccgccaaccccatcacggctctcgtcgacaccgccttcgttggccatgtcggttcgactgaacttgctgccgttggagtatccatttctatcttcaatctggtatgcaagctgctcaatgtgccattgctcaatgtcaccacatcctttgttgccgagcagcaggcagtggaagcagctgaaagaaatgaaatttcaataccccaagagaaagcaagtgaacaaaggaggtttcttccagcggtctcaacatccttggctctagctgctggcataggattgatggaaatggtggcactgatacttgggtctgggacactaatggacatcgttggtatacctgtcgattcagcgatgcgtgtacctgcagagcaatttcttactttaagggcatatggtgcacctccagtcatagtagcacttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgccgtgggtgttggtaacctagtgaatgcattgctggatgccatatttatttttccacttggtctaggtgtaagtggtgctgcattggcaactgtgacttcagagtacttgacagcatttatcctcctttggaagctgaacaacaaaattgttctgctctcatggaatatcattggtggagacgttgtccgctacctaaaatcaggtgcactgctaattgcaagaaccattgcggtagtcctgacattcacactgtcgacatccctggcagccagggaagggtctgttccaatggctggatatgagatatgtttgcaagtgtggttaacaatctctctgctcaatgatgcactagctcttgctggtcaggctctactcgcaagtgaatacgcaaaaggaaactacaagaaggcccgcgttgtcttatacagagttctccagattggaggcataactggtgtagcacttgctacaatcttgttccttgggtttggatatttgtccttgctgtttacagatgatccagcagttttagatgttgcccaaactggagtctggtttgtcactgtttctcaaccgataaatgctgttgcttttgtggccgatgggctctactatggtgtttctgactttgctttcgcggcgtactctacagttcagatttctattcttgtcatattccattgcattgttttatttgctggagctgtctcatccgcagtactgcttgtggccgctcctaagtttggtcttggtggaatctgggctggccttgctctatttatgagtttgcgagcaattgctggtctgtggaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaa
More
|
||||||||||
| Protein seq | MAATSPPMTSVAAAALVLTPSPALNRISFPFSRRHCRSAAPPPRWRPTRCRGKPGVTEVVAEKETSPDGEEEEVRGRGWFMVDEIGMDILTIALPAVLALAANPITALVDTAFVGHVGSTELAAVGVSISIFNLVCKLLNVPLLNVTTSFVAEQQAVEAAERNEISIPQEKASEQRRFLPAVSTSLALAAGIGLMEMVALILGSGTLMDIVGIPVDSAMRVPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVGVGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNNKIVLLSWNIIGGDVVRYLKSGALLIARTIAVVLTFTLSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARVVLYRVLQIGGITGVALATILFLGFGYLSLLFTDDPAVLDVAQTGVWFVTVSQPINAVAFVADGLYYGVSDFAFAAYSTVQISILVIFHCIVLFAGAVSSAVLLVAAPKFGLGGIWAGLALFMSLRAIAGLWRLGSKGGPWKIIWSETE |
||||||||||
| Function | Protein DETOXIFICATION 44, chloroplastic [UniProtKB/Swiss-Prot:Q84K71] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0000530 | OsLaMu_11g0000530.01 | Chr11 | 475627 | 479953 | + | NAM | ||
| CDS seq | atggcggcgacctcgccgccgatgacgtctgtcgccgccgccgcgcttgtcttaaccccttctccagctctcaaccgtatatcctttcccttctcccgtcgtcactgccgtagtgctgctcctcctcctcggtggaggcccacgcggtgccgcgggaagcccggtgtcacggaagttgtagccgagaaggagacttcgccggatggcgaagaggaggaggtgcgcgggcgcggatggttcatggttgatgagattggtatggacatcctcaccatcgccttgcctgctgtgctcgccctcgccgccaaccccatcacggctctcgtcgacaccgccttcgttggccatgtcggttcgactgaacttgctgccgttggagtatccatttctatcttcaatctggtatgcaagctgctcaatgtgccattgctcaatgtcaccacatcctttgttgccgagcagcaggcagtggaagcagctgaaagaaatgaaatttcaataccccaagagaaagcaagtgaacaaaggaggtttcttccagcggtctcaacatccttggctctagctgctggcataggattgatggaaatggtggcactgatacttgggtctgggacactaatggacatcgttggtatacctgtcgattcagcgatgcgtgtacctgcagagcaatttcttactttaagggcatatggtgcacctccagtcatagtagcacttgcagcacaaggtgcttttcgtggattcatggatacaaagacaccgttgtttgccgtgggtgttggtaacctagtgaatgcattgctggatgccatatttatttttccacttggtctaggtgtaagtggtgctgcattggcaactgtgacttcagagtacttgacagcatttatcctcctttggaagctgaacaacaaaattgttctgctctcatggaatatcattggtggagacgttgtccgctacctaaaatcaggtgcactgctaattgcaagaaccattgcggtagtcctgacattcacactgtcgacatccctggcagccagggaagggtctgttccaatggctggatatgagatatgtttgcaagtgtggttaacaatctctctgctcaatgatgcactagctcttgctggtcaggctctactcgcaagtgaatacgcaaaaggaaactacaagaaggcccgcgttgtcttatacagagttctccagattggaggcataactggtgtagcacttgctacaatcttgttccttgggtttggatatttgtccttgctgtttacagatgatccagcagttttagatgttgcccaaactggagtctggtttgtcactgtttctcaaccgataaatgctgttgcttttgtggccgatgggctctactatggtgtttctgactttgctttcgcggcgtactctacagttcagatttctattcttgtcatattccattgcattgttttatttgctggagctgtctcatccgcagtactgcttgtggccgctcctaagtttggtcttggtggaatctgggctggccttgctctatttatgagtttgcgagcaattgctggtctgtggaggttagggagcaaaggtggaccatggaaaataatctggtctgaaactgagtaa
More
|
|||||||
| Protein seq | MAATSPPMTSVAAAALVLTPSPALNRISFPFSRRHCRSAAPPPRWRPTRCRGKPGVTEVVAEKETSPDGEEEEVRGRGWFMVDEIGMDILTIALPAVLALAANPITALVDTAFVGHVGSTELAAVGVSISIFNLVCKLLNVPLLNVTTSFVAEQQAVEAAERNEISIPQEKASEQRRFLPAVSTSLALAAGIGLMEMVALILGSGTLMDIVGIPVDSAMRVPAEQFLTLRAYGAPPVIVALAAQGAFRGFMDTKTPLFAVGVGNLVNALLDAIFIFPLGLGVSGAALATVTSEYLTAFILLWKLNNKIVLLSWNIIGGDVVRYLKSGALLIARTIAVVLTFTLSTSLAAREGSVPMAGYEICLQVWLTISLLNDALALAGQALLASEYAKGNYKKARVVLYRVLQIGGITGVALATILFLGFGYLSLLFTDDPAVLDVAQTGVWFVTVSQPINAVAFVADGLYYGVSDFAFAAYSTVQISILVIFHCIVLFAGAVSSAVLLVAAPKFGLGGIWAGLALFMSLRAIAGLWRLGSKGGPWKIIWSETE
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLaMu_11g0000530 | OsLaMu_11g0000530.02 | Chr11 | 478541 | 479966 | + | IsoSeq | ||
| CDS seq | atgctgttgcttttgtggccgatgggctctactatggtgtttctgactttgctttcgcggcgtactctacagttcagatttctattcttgtcatattccattgcattgttgtcagttctagctgcagca |
|||||||
| Protein seq | MLLLLWPMGSTMVFLTLLSRRTLQFRFLFLSYSIALLSVLAAA |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr11 | 479096 | 479403 | + | OsLaMu_11g0000530.02 | OsLaMu_11g0000530.01,OsLaMu_11g0000530.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.820543 | 1.393129 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0106600 | RBH | 4.603232 | 3.389553 | 0.939900 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01580 | RBH | 3.169278 | 2.259569 | 0.241680 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0106600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0000530 | RBH | 0.941818 | 1.247802 | 1.674738 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000540 | RBH | 0.183002 | 0.285958 | 1.307900 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000540 | RBH | 1.489320 | 1.050121 | 2.376724 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0000540 | RBH | 0.606735 | 0.073790 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0000520 | RBH | 9.965149 | 3.288811 | 3.437296 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0005300 | SBH | 2.7424815 | 1.8662285 | 2.1333545 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000450 | SBH | 0.347514 | 0.075767 | 0.237825 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0005600 | RBH | 4.7724805 | 2.772763 | 5.88053 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000390 | RBH | 0.306162 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0000520 | RBH | 0.686162 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0000530 | RBH | 9.425825 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0000530 | RBH | 0.856645 | 0.0 | 0.705708 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000490 | RBH | 1.011248 | 1.092079 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G000540 | RBH | 2.273106 | 0.000000 | 4.780027 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000530 | SBH | 3.925816 | 17.064875 | 13.411567 |
