Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0678200 | OGI:11076340 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:27408007-27409934 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTGAGCCAAGCTTTGGTACGCGCAGCACTTCTTCTCATCCCTTCCCCGAACTCACGAACGCACGCCGCCACCACCGCCCACCGTCGTCTCGTCGGAGATGGCCTCCTCCGCCTCATGGCCGGCGTTCGGAGTGTAATGTGCCTTCTCCTCCTCCTCCTCTTTCTCAGCTGTACAGGAGCTTGATTCGTTATCACGTCGTTTCCTTAGATCGATATAGACCCCCCAACATTTTTGGTGGCTTGTTGCTTTGGTTCGAATCTCTCGCCTTCGATTTCCTACTTGTAGATGATGGATAACATGGAGGAATGCTTGTGATTTTGAGGATTTTTTTTAATGCCTACTTTGTTTGTCCCCCCTTCCTTATTCTAATGGGTTTTAGGGTTAAGAATTTGTAGATCTGAACATGATCTTGCATGATTAAAATATGGGTAAAGTAGCATTGAAGCATTTGTTGCATCTTTGGTGTGGTATATGTGGGCCATGTGGCATTACATTACTTGGGTTGCAAAACCCTATATTTGTGTGAATTTGTAGATTTGATTGTTTAGATAGAAAAAAAATGACCTGGATTTGTGAACCTGAATGAGTTTTAGTTAATAATTTTCACATCTGGACATGAACAGGAATAATTAAAATTTGGGCAAAGTAAAAAGTGGTGTCTTTCTACTTTCTAGGGTAGCTTGAATGGCAGTACATTCCTTGCTGTGGCATAAACCCATCTAAAATCCTAGATTTCTGATGTAATGGGGTTTACACCAAGAATGTGTGGATCTGGATGCGAAATATCTGATGCTATGAGACTAAAATTCCTTCAGTAATTACCGTTCTTATGAAAATTATTAGGTTGCTTATATATACTGCACTTGCTCGTAGATCTGTGGGATTATAATTGGTTTTAGTTAATAATTTGCAGATTTTGGACATGAATATGAATGGTTAAAATTTGGTTTAAGCAACTGATGTATTTTGAGGGTACCACCGATGGCAGTATATTCTTTGTGGTAGCATTTTTTGTAGTGAAAAATCTTAGGGGTGGCATAAATTCACCAAAAGTCTAGATTTCTGATATTCTAATGGGGTTTATGTCAAGAATTTATAGATTAGAAACAAAATCTGATGCTAATATTTCACCACCGATTGACACACTTAAATTCCTCATCATTCTTGAAAACAGAAAACTATTCTAACTAGCCTGTACCATTCTTTGATTGCTTACAATTCATTCGCTAGTAAATCAATTCCTAACCTACCTACTCTTGCTTGCTATTATCTCCAGAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCACATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATATCATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAGCACCAGAAATTCCTTGCTGCAGTATCAGTTGGGGTAGTCAGACTCGTATGATGATATTGCCTACTATATGCAATGCTTGTTGGGTTGGAACTTAAGTTGGATCTTTCAGTAGTTAAGGGATCTGGAGTTTTCTCTGAATGTAAAAACTAAAAAGTGAAAGAAGGAGCTGCCTGTGAGCAGAACTGAGGATTTTACCATGTTGGTTTGACCTTGTCTTTTACCACTGTTTTTAAGTTCCTGTAGCCTGTTGAGCTGTTCATATCC
More
|
||||||||||
| CDS seq | ATGGCCTCCTCCGCCTCATGGCCGGCGTTCGGAGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCACATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATATCATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAG
More
|
||||||||||
| Protein seq | MASSASWPAFGVSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGLKVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVVGKARRSGGVYEVEFLKVPLN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0678200 | OsNip_11t0678200-01 | Chr11 | 27408007 | 27409934 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCTCCTCCGCCTCATGGCCGGCGTTCGGAGTAAGCCCAGAGGAAGCAGGGAAGGGTAAATGGTACATCGCAACTGCTGCTACCAACCACATGACCAATGACAAGAGCCTCATCTCCGACCTCAAGCCTGTCGCCGATGGCCGTAATATCATTGCTGATGGCAATGGTGCAGGGTTGAAGGTGCAGGGCAGGGGAGCTGTGAACACAGAAACTGTGGTTCTCCCTGCAGAAGTGTGGTATGTGCCGGAGATTGATGAAAACTTGGTTTCTGTTGACCAGCTCAATGAACTTGGCCTCAGTATTTCGATTGGCCGAGGTGTATGCACCGTCACTAGAGTTAGTGATGGATCTGTAGTTGGCAAAGCGCGTAGATCAGGTGGAGTCTATGAGGTGGAATTCCTCAAGGTTCCCCTTAATTAG
More
|
|||||||
| Protein seq | MASSASWPAFGVSPEEAGKGKWYIATAATNHMTNDKSLISDLKPVADGRNIIADGNGAGLKVQGRGAVNTETVVLPAEVWYVPEIDENLVSVDQLNELGLSISIGRGVCTVTRVSDGSVVGKARRSGGVYEVEFLKVPLN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0678301 | RBH | 0.0 | 0.0 | 3.234236 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g45290 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0678200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023930 | SBH | 0.0 | 0.0 | 1.393465 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023620 | RBH | 0.0 | 0.0 | 3.443123 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0023270 | SBH | 0.0 | 0.0 | 4.110581 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0023220 | SBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0023850 | SBH | 0.000000 | 1.390832 | 8.885913 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0435900 | RBH | 0.134064 | 0.1522 | 0.0066205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0024160 | SBH | 0.000000 | 0.000000 | 1.106125 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0433500 | RBH | 3.2534245 | 0.035568 | 64.2402305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023900 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0023470 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0023160 | SBH | 0.0 | 0.0 | 1.546784 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0023380 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G023450 | RBH | 0.000000 | 1.297925 | 5.818026 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0023880 | RBH | 0.595548 | 2.476848 | 2.937780 |
