Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0550100 | OGI:11060830 | 10/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:20445822-20450284 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGATTCTTCCTTTAAGTTCTTGCAGATACTTTAGACTCCCAAATCCATCTGGTATTCGGGTTTTCAAGTAGACATTGAGGTACAAAATTTGTCCTAGTCGAACAAAGGTGGATGGCAAATCTTCTATTTCGATGCCATTTATGCACAGTACCTGTAAAGATTGTAGATTCTCGATCTCTCTCGGGATCTCTGTAACAGATGTCCTGGACAGGTTCAAATACCTTAGGTGAAACAAGTACAAGCAAATATCCTTGCAGTGATTGTTATCCACTTTCTTGCAGCCACTTAAGTTCAATACACGTAATAGTGGGAAGCTTGAGTAGGCAGGAAATGAATTGAAGCCTTTGAAAAAAATTAGTGACCTGACATGCGACAAGTTCGAAATAGATAACTGCTTGAAATCATCTTCATGTGCGTTTTCATTCTCTATTTTACTGGCCAACATACTCGCTATGGTAATGATAGCCAAGGGTACTCCGCTACATTTCTTCAAAATTCTCTCTGACAATTCAGCCAACTGAGGAGGACATTTGTCTTCAGCACCAAATATTCTCAGATTAAACAATTTCCTTGAGTCAACATGACAAAGAGGTTTTAGTTGATAAACACCACCAACTTCTTTTGCAACATCAACATTGCGAGTTGTTGTGATTATTCCACTTCCATTTTCACTATCAACAAAAGAACACTTGATCTTTTCCCAGGCAGATATATCCCATATATCATCAATGACAATTAAGTACCTATAAGGAAATATGAGAAGACCAATTACTTGATTTTTTTTCCTTTCAGTATGATATAGCTAATTAAGTGAAATGGTATTTATAAAAGAAAATCTGAGGGCACCAAAATAATTCATACTACCTTCGGTTTTTAATAGATGTGTTTAATTGTAGATGCATGTTTGACCATTCATCTTAGTCTAAAAATTCGTGCAGATATGAAAAATGTAAGTCACAATAAGTAGCTTTGATTATAAACCAAGTCACAATAAAACGAATGGTTCTTTTTTAGTAAGACAAATAGTCAACCCTATATCCACAAGTCAACGGTATCATTTATTAAAAACCGGAGAGAGTAGCAAGGTAGACATAAGGATGGATGGATACAAGAACATGAAACTGAGAAAGTACAGCACTAACGCACCTCTCTAGGTGACTGTGGTAATTAAATTTCTATGGCAACTATAAGGGGCGGATCCAACGGGGGTGCTGGGGGGACCTGAGTTCTCGCTACCCCGCTGGATCACCATTAATAGAAGGAGAGATGAAAGGGGAAGAAGAGGAAGAAAATGAAGAGTAGGGGGGGTGAAGAAGGAAGAAGGAGATGAGTCCCCCTTCAATCTGGTTCTGGATCCGCCCCTGGCAACTATGGTACACTTGGTACAATAATATTTTTCAAAATTTTAATTGATACATCGTTGACATTACTAAAGCACTCACTATATGTGTTCAACATTCATAAATCAAACTCACATGTTCAGAAAAAAAACTTAAGTCAGAAGAATACTAATCAAGAGCACATGATACTGATTTAGAAAAGTCCCTTGCTTTGTGCAACTAAAGCATATTTAAAAATGCATGCTATATGCAAAACTAGTGAATACCCCACGCACTACAGCGAGAAATTTTAAAATAATTCCCAGAAAACTTGGAAATCATGTACTCGTAATGCCTGAAAAGAAACTATTTTCAGAACTATAGCAGTTTACGTGGAATTGCAACACTATATGACACATGGATGGTTATGCTCGATCCAGAATGAGAGATCCAACGCTATTGGACCGGTTATTTTTGAAAATGCCCAAAATGCCCTTTACAAGATTGACAATTAATTGATTTATCCTATTAGAAATTTCATAAATTTATTATTATTATTATTGTGTATCCCCTCACACAATATATAAGTTTGTGTATACTATGTTTCAAACGAAACATTCATGTGTTTTTTTATAAAGTTATTCCTTGCAGCATATGAGAGAGGAATCATATACACAAAATAAAATAACACAAAAATATTTTGTGTAGCATAAGGAAGATTGTTTACATTAAAAACAACAATAAAAATACTATATGTAGCATATAATAGACAAATTATGTTTTATAAAAGACTGGTAATCCTAGTGTTTAATATATATACAAACTTCTATGCCATATAAGGAAGCTAAAAAGAAAAAACCATTTTTTTAACTTTTAATAGGATAAATCCATCAACACTGTATGTCTATAAGGGTATTTTGGGTATTAATTTTAAAATTATCCAACCCAATAGTATATTATAGAAACAACAGATAAACTCAATGATATATTATACAATCAATGGCAAATCACTGAACTGATGTACATAGAGTAAATTTTCTCTTCATTTTATTTTATAATTTTTACTTTATTTCTCTTGTTTAGTATATTTGTATTGAAACACTTTAGCTGACTAATAAAATATCTTGGCATGCTCTTGGCGACGTATATGCATGTTGGTACTAAAAGTCCAAACAAATTTGACTACCGTCTTCTCAGAATTCCTGCTACCAATCAAAACAAAATTTACTTCCCTCCGCTTCAATGACGTACACTGTTGCTTGAGCTGATCCAACTCGGTTTTCCTTGGCAAGACTACTCATATAGCTGATATAATACTTACTCAACAAAGTACAAAGTTACTACTAGACTATCTACGAGTGTAAAATAGAAGATTACGTAATAAAAAAATACAGAATTGACCGTTTGATTAGACCATAGGAAAACACAGAAATTGAATGAGAGAGAGACTCAGAGAAAATTTTTCAAGGTTGAAGCTCTTGCTAAGTTTCCTCTAAATCTATACGTAATAGTAAGATATTCCATAGGATTTCAGAAACTCTAATCCTTTATATCAAATGGCCAAATAGAAAATGATTTGAATCCAATGAAACTTCTTTATAAATCCTTCTAATCAAAAGGACCCTAGTCAATATCATTTTAGCTTCTATCCGGCACCATACAAGCTACGTTTAGCTCATGGTAAAACCCAAATCCACTTGCTCATTTTACTACGGTCATTGCTTGTGTAATTATCTAGCTTGCATACACATACTTTGTTCTTAAGCATACTTATTTGATCTTTGCTCTCATGACTACAAAGTAATATCCTACAACAGATACGTAGGTATAAGTCAATATATCATAGACATATATACATATATTAAGGCGAGTCTCATCATGAATTATAATTTGAGGATACCAGCCACTACAATTTAGTAACAGATCATAATGATTATGCATACACATATATGAACCACTTATACGCACCTTTTGTTTCTAAGGAATTCTCTCAGTTCTGCGATGAGTTGTGCTTCATCCCATGTTACCTCATTGATGTTCCGATACTTTTTCTTATCAAACTGATGGAGCATATTCTTGAATATCTTCTCCATGTTAGGAGTAAGAGAGACGGGAACAAAGGCAAAGCAATAGAATTGTGTTTTAAGCCTCTCATACACAACATTAGCCAGAGTCGTCTTTCCTAATCCTCCAACTCCGACAATCGAAACTATCTTCAATTTCTGCTTCGACTCTTCACTCACATCCCTTTTTCTTTTTCTTATCGATGACTCGCCTGTCCCCATTAGCATTCTTACAAGCTCATCGCTCTTCTCATCGATGCCAACAAACTCGTTTACCCTTTTATACAAGGCTATCAACGGTTGGTCCTATAGGCTTGGTCAAAACGCCATCAACCTTGTACCTATCATGCCGATCATTCACCTCCTTGATGCGGCTCTTGATCCCTTTGATGTCCGTGCCGATCTTGTGGCGAAACTTGGCTCTGTTCAGCAAATCCATGCTTCTGTAAACAAAGCCCCCGAAGCTACACGAGTTGTTCGGCGTACGGCTGTCGATACACACCATGAACTCGTCGACGCTGTCCTCGATGTCATACGACAGATCCCTGACGTCCCTAGCCCAGATCTTGACTTGGCGGTCAGGCGGTTGGTCGATCGGCGCCTCAGAAACCTTGAGGAGTGCAGCCTCCATGCTCTCCAGCTCGGATTTCAAGAAGGTGATCTCCTCCCTGAGGTTCCTGTGAAGCTTATACTCCTCCTTGAGCAGGTTGCCCAGCTTGGACAGCAAGGCGCCCATCGCCCCAGTCACCACCTCCATCCACGCTCCAGCTCTGCTGATCAAACTAAGTTTGGCTTTAATTTCCAACGACGGCCGATCGATCGAGAACCTACAGGGTTCCAATATCCCCAAAATCAAAGTGCCCTAGCGAAAAAAAATCAATCAAGCCTTTTATATATATCATGAAATATGTGGAACAAGAAACACACAGGAGAATCGCACTCAATTTTCCATAAGCCAACGAACCTTAATTAGCGCCCGCGGCGCGAGCGCGACGGCCGGCGGTCGCGTAGAGCAATCGACATGATGGCGGGTCGCCGAGGTAGCTAGCTGCAGCCTGCAGTGAAAGCAGAGATCGAGATT
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| CDS seq | ATGCTAATGGGGACAGGCGAGTCATCGATAAGAAAAAGAAAAAGGGATGTGAGTGAAGAGTCGAAGCAGAAATTGAAGATAGTTTCGATTGTCGGAGTTGGAGGATTAGGAAAGACGACTCTGGCTAATGTTGTGTATGAGAGGCTTAAAACACAATTCTATTGCTTTGCCTTTGTTCCCGTCTCTCTTACTCCTAACATGGAGAAGATATTCAAGAATATGCTCCATCAGTTTGATAAGAAAAAGTATCGGAACATCAATGAGGTAACATGGGATGAAGCACAACTCATCGCAGAACTGAGAGAATTCCTTAGAAACAAAAGGTACTTAATTGTCATTGATGATATATGGGATATATCTGCCTGGGAAAAGATCAAGTGTTCTTTTGTTGATAGTGAAAATGGAAGTGGAATAATCACAACAACTCGCAATGTTGATGTTGCAAAAGAAGTTGGTGGTGTTTATCAACTAAAACCTCTTTGTCATGTTGACTCAAGGAAATTGTTTAATCTGAGAATATTTGGTGCTGAAGACAAATGTCCTCCTCAGTTGGCTGAATTGTCAGAGAGAATTTTGAAGAAATGTAGCGGAGTACCCTTGGCTATCATTACCATAGCGAGTATGTTGGCCAGTAAAATAGAGAATGAAAACGCACATGAAGATGATTTCAAGCAGTTATCTATTTCGAACTTGTCGCATGTCAGGTCACTAATTTTTTTCAAAGGCTTCAATTCATTTCCTGCCTACTCAAGCTTCCCACTATTACGTGTATTGAACTTAAGTGGCTGCAAGAAAGTGGATAACAATCACTGCAAGGATATTTGCTTGTACTTGTTTCACCTAAGGTATTTGAACCTGTCCAGGACATCTGTTACAGAGATCCCGAGAGAGATCGAGAATCTACAATCTTTACAGGTACTGTGCATAAATGGCATCGAAATAGAAGATTTGCCATCCACCTTTGTTCGACTAGGACAAATTTTGTACCTCAATGTCTACTTGAAAACCCGAATACCAGATGGATTTGGGAGTCTAAAGTATCTGCAAGAACTTAAAGGAAGAATCC
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| Protein seq | MLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKRYLIVIDDIWDISAWEKIKCSFVDSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRI |
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| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0550100 | OsNip_11t0550100-01 | Chr11 | 20445822 | 20450284 | - | RAP2018-11-26 | ||
| CDS seq | ATGCTAATGGGGACAGGCGAGTCATCGATAAGAAAAAGAAAAAGGGATGTGAGTGAAGAGTCGAAGCAGAAATTGAAGATAGTTTCGATTGTCGGAGTTGGAGGATTAGGAAAGACGACTCTGGCTAATGTTGTGTATGAGAGGCTTAAAACACAATTCTATTGCTTTGCCTTTGTTCCCGTCTCTCTTACTCCTAACATGGAGAAGATATTCAAGAATATGCTCCATCAGTTTGATAAGAAAAAGTATCGGAACATCAATGAGGTAACATGGGATGAAGCACAACTCATCGCAGAACTGAGAGAATTCCTTAGAAACAAAAGGTACTTAATTGTCATTGATGATATATGGGATATATCTGCCTGGGAAAAGATCAAGTGTTCTTTTGTTGATAGTGAAAATGGAAGTGGAATAATCACAACAACTCGCAATGTTGATGTTGCAAAAGAAGTTGGTGGTGTTTATCAACTAAAACCTCTTTGTCATGTTGACTCAAGGAAATTGTTTAATCTGAGAATATTTGGTGCTGAAGACAAATGTCCTCCTCAGTTGGCTGAATTGTCAGAGAGAATTTTGAAGAAATGTAGCGGAGTACCCTTGGCTATCATTACCATAGCGAGTATGTTGGCCAGTAAAATAGAGAATGAAAACGCACATGAAGATGATTTCAAGCAGTTATCTATTTCGAACTTGTCGCATGTCAGGTCACTAATTTTTTTCAAAGGCTTCAATTCATTTCCTGCCTACTCAAGCTTCCCACTATTACGTGTATTGAACTTAAGTGGCTGCAAGAAAGTGGATAACAATCACTGCAAGGATATTTGCTTGTACTTGTTTCACCTAAGGTATTTGAACCTGTCCAGGACATCTGTTACAGAGATCCCGAGAGAGATCGAGAATCTACAATCTTTACAGGTACTGTGCATAAATGGCATCGAAATAGAAGATTTGCCATCCACCTTTGTTCGACTAGGACAAATTTTGTACCTCAATGTCTACTTGAAAACCCGAATACCAGATGGATTTGGGAGTCTAAAGTATCTGCAAGAACTTAAAGGAAGAATCC
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| Protein seq | MLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKRYLIVIDDIWDISAWEKIKCSFVDSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.133922 | 0.137796 | 2.618561 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0550500 | RBH | 0.123558 | 0.382721 | 2.032062 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34880 | RBH | 0.108354 | 0.297972 | 0.434013 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0550100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017020 | RBH | 0.115232 | 0.000000 | 1.636646 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017100 | RBH | 0.0 | 0.0 | 0.743269 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016960 | RBH | 0.000000 | 0.0 | 2.404423 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016600 | RBH | 0.129579 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016890 | RBH | 0.970018 | 0.0 | 4.764341 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0320800 | RBH | 1.1979555 | 3.9370895 | 3.534531 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0017430 | SBH | 0.235359 | 0.091657 | 0.567855 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0330600 | SBH | 2.1264245 | 6.1214985 | 5.670177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017230 | RBH | 0.041894 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017300 | SBH | 0.148575 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0016680 | SBH | 0.351766 | 0.0 | 0.194610 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016870 | SBH | 0.119434 | 4.523183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G016800 | SBH | 0.113983 | 2.011609 | 0.791362 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0017140 | SBH | 0.821338 | 5.267231 | 1.813038 |
