Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_11g0017100 | OGI:11060830 | 10/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr11:21757841-21762927 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcttcctctcctgtgcttcctaaatctaagttcctatggcctatgggctcctatatccatagcatacatatatggggttgggccccttgacttcgagggcctagtgcgatggcacagctcgacccccctcagggtcggacctgctcatttcagtgaaaacatagtatatgtaatatacatggattattataaaatcaaacaaattaaaaccaacacatatcttggccaattgttcatcacaacataatcatcaccatgattttacagttcctacatgctcaagtcaagtgtggggctgttgggattcatatggatctgtcttctaattccagcctcgacaacctcgtgcatttcctcagggcagttgttaagatataaataggcatgctcaagggcagagaggttctccaggccaaaatccacatgatcatgtgtcttgtgcacatcgatgaataatttaagtgttcgaagattctgcatggctccttgtgcaaactcgatctccatggtgtcactccagtactcgaaaagtgataggcacttgaatcggtagctgattatcagcctctcatccctgtccactgtgggtttctccactcctagatagagacgactaagagatggtatgctcccaagtatttgcaggtccctctctttcagtgtgtctaatttgatagttagattggagagggtggatagggagaccatccagtttggcactgcatggatggtgctattccacatgccaatggaacaaagctgttgaggtctaggagatgaatcatcacatgcagaatctaggctgccaaagcaaccagctattgtgaggtcctcaaggctgaccagattagataaacatcggtgcaaaggttccttccagctcgtttcccatccttggaactcaatatgcaatcgcctgagctcggtcagcttgccaagatcgtgcacattggttagagatccgatgaggattcttcctttaagttcttgcagatactttagactcccaaatccatctggtattcgggttttcaagtagacattgaggtacaaaatttgtcctagtcgaacaaaggtggatggcaaatcttctatttcgatgccatttatgcacagtacctgtaaagattgtagattctcgatctctctcgggatctctgtaacagatgtcctggacaggttcaaataccttaggtgaaacaagtacaagcaaatatccttgcagtgattgttatccactttcttgcagccacttaagttcaatacacgtaatagtgggaagcttgagtaggcaggaaatgaattgaagcctttgaaaaaaattagtgacctgacatgcgacaagttcgaaatagataactgcttgaaatcatcttcatgtgcgttttcattctctattttactggccaacatactcgctatggtaatgatagccaagggtactccgctacatttcttcaaaattctctctgacaattcagccaactgaggaggacatttgtcttcagcaccaaatattctcagattaaacaatttccttgagtcaacatgacaaagaggttttagttgataaacaccaccaacttcttttgcaacatcaacattgcgagttgttgtgattattccacttccattttcactatcaacaaaagaacacttgatcttttcccaggcagatatatcccatatatcatcaatgacaattaagtacctataaggaaatatgagaagaccaattacttgattttttttcctttcagtatgatatagctaattaagtgaaatggtatttataaaagaaaatctgagggcaccAaaataattcatactaccttcggtttttaatagatgtgtttaattgtagatgcatgtttgaccattcatcttagtctaaaaattcgtgcagatatgaaaaatgtaagtcacaataagtagctttgattataaaccaagtcacaataaaacgaatggttcttttttagtaagacaaatagtcaaccctatatccacaagtcaacggtatcatttattaaaaaccggagagagtagcaaggtagacataaggatggatggatacaagaacatgaaactgagaaagtacagcactaacgcacctctctaggtgactgtggtaattaaatttctatggcaactataaggggcggatccaacgggggtgctggggggacctgagttctcgctaccccgctggatcaccattaatagaaggagagatgaaaggggaagaagaggaagaaaatgaagagtagggggggtgaagaaggaagaaggagatgagtcccccttcaatctggttctggatccgcccctggcaactatggtacacttggtacaataatatttttcaaaattttaattgatacatcgttgacattactaaagcactcactatatgtgttcaacattcataaatcaaactcacatgttcagaaaaaaaacttaagtcagaagaatactaatcaagagcacatgatactgatttagaaaagtcccttgctttgtgcaactaaagcatatttaaaaatgcatgctatatgcaaaactagtgaataccccacgcactacagcgagaaattttaaaataattcccagaaaacttggaaatcatgtactcgtaatgcctgaaaagaaactattttcagaactatagcagtttacgtggaattgcaacactatatgacacatggatggttatgctcgatccagaatgagagatccaacgctattggaccggttatttttgaaaatgcccaaaatgccctttacaagattgacaattaattgatttatcctattagaaatttcataaatttattattattattattgtgtatcccctcacacaatatataagtttgtgtatactatgtttcaaacgaaacattcatgtgtttttttataaagttattccttgcagcatatgagagaggaatcatatacacaaaataaaataacacaaaaatattttgtgtagcataaggaagattgtttacattaaaaacaacaataaaaatactatatgtagcatataatagacaaattatgttttataaaagactggtaatcctagtgtttaatatatatacaaacttctatgccatataaggaagctaaaaagaaaaaaccatttttttaacttttaataggataaatccatcaacactgtatgtctataagggtattttgggtattaattttaaaattatccaacccaatagtatattatagaaacaacagataaactcaatgatatattatacaatcaatggcaaatcactgaactgatgtacatagagtaaattttctcttcattttattttataatttttactttatttctcttgtttagtatatttgtattgaaacactttagctgactaataaaatatcttggcatgctcttggcgacgtatatgcatgttggtactaaaagtccaaacaaatttgactaccgtcttctcagaattcctgctaccaatcaaaacaaaatttacttccctccgcttcaatgacgtacactgttgcttgagctgatccaactcggttttccttggcaagactactcatatagctgatataatacttactcaacaaagtacaaagttactactagactatctacgagtgtaaaatagaagattacgtaataaaaaaaatacagaattgaccgtttgattagaccataggaaaacacagaaattgaatgagagagagactcagagaaaatttttcaaggttgaagctcttgctaagtttcctctaaatctatacgtaatagtaagatattccataggatttcagaaactctaatcctttatatcaaatggccaaatagaaaatgatttgaatccaatgaaacttctttataaatccttctaatcaaaaggaccctagtcaatatcattttagcttctatccggcaccatacaagctacgtttagctcatggtaaaacccaaatccacttgctcattttactacggtcattgcttgtgtaattatctagcttgcatacacatactttgttcttaagcatacttatttgatctttgctctcatgactacaaagtaatatcctacaacagatacgtaggtataagtcaatatatcatagacatatatacatatattaaggcgagtctcatcatgaattataatttgaggataccagccactacaatttagtaacagatcataatgattatgcatacacatatatgaaccacttatacgcaccttttgtttctaaggaattctctcagttctgcgatgagttgtgcttcatcccatgttacctcattgatgttccgatactttttcttatcaaactgatggagcatattcttgaatatcttctccatgttaggagtaagagagacgggaacaaaggcaaagcaatagaattgtgttttaagcctctcatacacaacattagccagagtcgtctttcctaatcctccaactccgacaatcgaaactatcttcaatttctgcttcgactcttcactcacatccctttttctttttcttatcgatgactcgcctgtccccattagcattcttacaagctcatcgctcttctcatcgatgccaacaaactcgtttacccttttatacaaggctatcaacggttggtcctataggcttggtcaaaacgccatcaaccttgtacctatcatgccgatcattcacctccttgatgcggctcttgatccctttgatgtccgtgccgatcttgtggcgaaacttggctctgttcagcaaatccatgcttctgtaaacaaagcccccgaagctacacgagttgttcggcgtacggctgtcgatacacaccatgaactcgtcgacgctgtcctcgatgtcatacgacagatccctgacgtccctagcccagatcttgacttggcggtcaggcggttggtcgatcggcgcctcagaaaccttgaggagtgcagcctccatgctctccagctcggatttcaagaaggtgatctcctccctgaggttcctgtgaagcttatactcctccttgagcaggttgcccagcttggacagcaaggcgcccat
More
|
||||||||||
| CDS seq | atgggcgccttgctgtccaagctgggcaacctgctcaaggaggagtataagcttcacaggaacctcagggaggagatcaccttcttgaaatccgagctggagagcatggaggctgcactcctcaaggtttctgaggcgccgatcgaccaaccgcctgaccgccaagtcaagatctgggctagggacgtcagggatctgtcgtatgacatcgaggacagcgtcgacgagttcatggtgtgtatcgacagccgtacgccgaacaactcgtgtagcttcgggggctttgtttacagaagcatggatttgctgaacagagccaagtttcgccacaagatcggcacggacatcaaagggatcaagagccgcatcaaggaggtgaatgatcggcatgatagggtaaacgagtttgttggcatcgatgagaagagcgatgagcttgtaagaatgctaatggggacaggcgagtcatcgataagaaaaagaaaaagggatgtgagtgaagagtcgaagcagaaattgaagatagtttcgattgtcggagttggaggattaggaaagacgactctggctaatgttgtgtatgagaggcttaaaacacaattctattgctttgcctttgttcccgtctctcttactcctaacatggagaagatattcaagaatatgctccatcagtttgataagaaaaagtatcggaacatcaatgaggtaacatgggatgaagcacaactcatcgcagaactgagagaattccttagaaacaaaagtgaaaatggaagtggaataatcacaacaactcgcaatgttgatgttgcaaaagaagttggtggtgtttatcaactaaaacctctttgtcatgttgactcaaggaaattgtttaatctgagaatatttggtgctgaagacaaatgtcctcctcagttggctgaattgtcagagagaattttgaagaaatgtagcggagtacccttggctatcattaccatagcgagtatgttggccagtaaaatagagaatgaaaacgcacatgaagatgatttcaagcagttatctatttcgaacttgtcgcatgtcaggtcactaatttttttcaaaggcttcaattcatttcctgcctactcaagcttcccactattacgtgtattgaacttaagtggctgcaagaaagtggataacaatcactgcaaggatatttgcttgtacttgtttcacctaaggtatttgaacctgtccaggacatctgttacagagatcccgagagagatcgagaatctacaatctttacaggtactgtgcataaatggcatcgaaatagaagatttgccatccacctttgttcgactaggacaaattttgtacctcaatgtctacttgaaaacccgaataccagatggatttgggagtctaaagtatctgcaagaacttaaaggaagaatcctcatcggatctctaaccaatgtgcacgatcttggcaagctgaccgagctcaggcgattgcatattgagttccaaggatgggaaacgagctggaaggaacctttgcaccgatgtttatctaatctggtcagccttgaggacctcacaatagctggttgctttggcagcctagattctgcatgtgatgattcatctcctagacctcaacagctttgttccattggcatgtggaatagcaccatccatgcagtgccaaactggatggtctccctatccaccctctccaatctaactatcaaattagacacactgaaagagagggacctgcaaatacttgggagcataccatctcttagtcgtctctatctaggagtggagaaacccacagtggacagggatgagaggctgataatcagctaccgattcaagtgcctatcacttttcgagtactggagtgacaccatggagatcgagtttgcacaaggagccatgcagaatcttcgaacacttaaattattcatcgatgtgcacaagacacatgatcatgtggattttggcctggagaacctctctgcccttgagcatgcctatttatatcttaacaactgccctgaggaaatgcacgaggttgtcgaggctggaattagaagacagatccatatgaatcccaacagccccacacttgacttgagcatg
More
|
||||||||||
| Protein seq | MGALLSKLGNLLKEEYKLHRNLREEITFLKSELESMEAALLKVSEAPIDQPPDRQVKIWARDVRDLSYDIEDSVDEFMVCIDSRTPNNSCSFGGFVYRSMDLLNRAKFRHKIGTDIKGIKSRIKEVNDRHDRVNEFVGIDEKSDELVRMLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRILIGSLTNVHDLGKLTELRRLHIEFQGWETSWKEPLHRCLSNLVSLEDLTIAGCFGSLDSACDDSSPRPQQLCSIGMWNSTIHAVPNWMVSLSTLSNLTIKLDTLKERDLQILGSIPSLSRLYLGVEKPTVDRDERLIISYRFKCLSLFEYWSDTMEIEFAQGAMQNLRTLKLFIDVHKTHDHVDFGLENLSALEHAYLYLNNCPEEMHEVVEAGIRRQIHMNPNSPTLDLSM |
||||||||||
| Function | Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_11g0017100 | OsKeNa_11g0017100.01 | Chr11 | 21757841 | 21762927 | - | NAM | ||
| CDS seq | atgggcgccttgctgtccaagctgggcaacctgctcaaggaggagtataagcttcacaggaacctcagggaggagatcaccttcttgaaatccgagctggagagcatggaggctgcactcctcaaggtttctgaggcgccgatcgaccaaccgcctgaccgccaagtcaagatctgggctagggacgtcagggatctgtcgtatgacatcgaggacagcgtcgacgagttcatggtgtgtatcgacagccgtacgccgaacaactcgtgtagcttcgggggctttgtttacagaagcatggatttgctgaacagagccaagtttcgccacaagatcggcacggacatcaaagggatcaagagccgcatcaaggaggtgaatgatcggcatgatagggtaaacgagtttgttggcatcgatgagaagagcgatgagcttgtaagaatgctaatggggacaggcgagtcatcgataagaaaaagaaaaagggatgtgagtgaagagtcgaagcagaaattgaagatagtttcgattgtcggagttggaggattaggaaagacgactctggctaatgttgtgtatgagaggcttaaaacacaattctattgctttgcctttgttcccgtctctcttactcctaacatggagaagatattcaagaatatgctccatcagtttgataagaaaaagtatcggaacatcaatgaggtaacatgggatgaagcacaactcatcgcagaactgagagaattccttagaaacaaaagtgaaaatggaagtggaataatcacaacaactcgcaatgttgatgttgcaaaagaagttggtggtgtttatcaactaaaacctctttgtcatgttgactcaaggaaattgtttaatctgagaatatttggtgctgaagacaaatgtcctcctcagttggctgaattgtcagagagaattttgaagaaatgtagcggagtacccttggctatcattaccatagcgagtatgttggccagtaaaatagagaatgaaaacgcacatgaagatgatttcaagcagttatctatttcgaacttgtcgcatgtcaggtcactaatttttttcaaaggcttcaattcatttcctgcctactcaagcttcccactattacgtgtattgaacttaagtggctgcaagaaagtggataacaatcactgcaaggatatttgcttgtacttgtttcacctaaggtatttgaacctgtccaggacatctgttacagagatcccgagagagatcgagaatctacaatctttacaggtactgtgcataaatggcatcgaaatagaagatttgccatccacctttgttcgactaggacaaattttgtacctcaatgtctacttgaaaacccgaataccagatggatttgggagtctaaagtatctgcaagaacttaaaggaagaatcctcatcggatctctaaccaatgtgcacgatcttggcaagctgaccgagctcaggcgattgcatattgagttccaaggatgggaaacgagctggaaggaacctttgcaccgatgtttatctaatctggtcagccttgaggacctcacaatagctggttgctttggcagcctagattctgcatgtgatgattcatctcctagacctcaacagctttgttccattggcatgtggaatagcaccatccatgcagtgccaaactggatggtctccctatccaccctctccaatctaactatcaaattagacacactgaaagagagggacctgcaaatacttgggagcataccatctcttagtcgtctctatctaggagtggagaaacccacagtggacagggatgagaggctgataatcagctaccgattcaagtgcctatcacttttcgagtactggagtgacaccatggagatcgagtttgcacaaggagccatgcagaatcttcgaacacttaaattattcatcgatgtgcacaagacacatgatcatgtggattttggcctggagaacctctctgcccttgagcatgcctatttatatcttaacaactgccctgaggaaatgcacgaggttgtcgaggctggaattagaagacagatccatatgaatcccaacagccccacacttgacttgagcatg
More
|
|||||||
| Protein seq | MGALLSKLGNLLKEEYKLHRNLREEITFLKSELESMEAALLKVSEAPIDQPPDRQVKIWARDVRDLSYDIEDSVDEFMVCIDSRTPNNSCSFGGFVYRSMDLLNRAKFRHKIGTDIKGIKSRIKEVNDRHDRVNEFVGIDEKSDELVRMLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRILIGSLTNVHDLGKLTELRRLHIEFQGWETSWKEPLHRCLSNLVSLEDLTIAGCFGSLDSACDDSSPRPQQLCSIGMWNSTIHAVPNWMVSLSTLSNLTIKLDTLKERDLQILGSIPSLSRLYLGVEKPTVDRDERLIISYRFKCLSLFEYWSDTMEIEFAQGAMQNLRTLKLFIDVHKTHDHVDFGLENLSALEHAYLYLNNCPEEMHEVVEAGIRRQIHMNPNSPTLDLSM
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.743269 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0550100 | RBH | 0.133922 | 0.137796 | 2.618561 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g34880 | RBH | 0.108354 | 0.297972 | 0.434013 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0550100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0017020 | RBH | 0.115232 | 0.000000 | 1.636646 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0017160 | SBH | 0.000000 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016960 | RBH | 0.000000 | 0.0 | 2.404423 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016600 | RBH | 0.129579 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016890 | RBH | 0.970018 | 0.0 | 4.764341 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0320800 | RBH | 1.1979555 | 3.9370895 | 3.534531 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0019270 | SBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0330600 | SBH | 2.1264245 | 6.1214985 | 5.670177 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0017230 | RBH | 0.041894 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0017300 | SBH | 0.148575 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016770 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0071860 | RBH | 0.0 | 0.0 | 0.144106 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016870 | SBH | 0.119434 | 4.523183 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G018790 | SBH | 0.000000 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0019010 | SBH | 0.0 | 0.0 | 0.000000 |
