Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
LOC_Os11g34880 OGI:11060830 | 10/16 Nipponbare | IRGSP 1.0 | MSU Chr11:20444817-20450284
Gene Symbol -
DNA seq

TGCATAAAAAAAACATTCTTAGCAAACAAGTTGTATATCTTCCTCTCCTGTGCTTCCTAAATCTAAGTTCCTATGGCCTATGGGCTCCTATATCCATAGCATACATATATGGGGTTGGGCCCCTTGACTTCGAGGGCCTAGTGCGATGGCACAGCTCGACCCCCCTCAGGGTCGGACCTGCTCATTTCAGTGAAAACATAGTATATGTAATATACATGGATTATTATAAAATCAAACAAATTAAAACCAACACATATCTTGGCCAATTGTTCATCACAACATAATCATCACCATGATTTTACAGTTCCTACATGCTCAAGTCAAGTGTGGGGCTGTTGGGATTCATATGGATCTGTCTTCTAATTCCAGCCTCGACAACCTCGTGCATTTCCTCAGGGCAGTTGTTAAGATATAAATAGGCATGCTCAAGGGCAGAGAGGTTCTCCAGGCCAAAATCCACATGATCATGTGTCTTGTGCACATCGATGAATAATTTAAGTGTTCGAAGATTCTGCATGGCTCCTTGTGCAAACTCGATCTCCATGGTGTCACTCCAGTACTCGAAAAGTGATAGGCACTTGAATCGGTAGCTGATTATCAGCCTCTCATCCCTGTCCACTGTGGGTTTCTCCACTCCTAGATAGAGACGACTAAGAGATGGTATGCTCCCAAGTATTTGCAGGTCCCTCTCTTTCAGTGTGTCTAATTTGATAGTTAGATTGGAGAGGGTGGATAGGGAGACCATCCAGTTTGGCACTGCATGGATGGTGCTATTCCACATGCCAATGGAACAAAGCTGTTGAGGTCTAGGAGATGAATCATCACATGCAGAATCTAGGCTGCCAAAGCAACCAGCTATTGTGAGGTCCTCAAGGCTGACCAGATTAGATAAACATCGGTGCAAAGGTTCCTTCCAGCTCGTTTCCCATCCTTGGAACTCAATATGCAATCGCCTGAGCTCGGTCAGCTTGCCAAGATCGTGCACATTGGTTAGAGATCCGATGAGGATTCTTCCTTTAAGTTCTTGCAGATACTTTAGACTCCCAAATCCATCTGGTATTCGGGTTTTCAAGTAGACATTGAGGTACAAAATTTGTCCTAGTCGAACAAAGGTGGATGGCAAATCTTCTATTTCGATGCCATTTATGCACAGTACCTGTAAAGATTGTAGATTCTCGATCTCTCTCGGGATCTCTGTAACAGATGTCCTGGACAGGTTCAAATACCTTAGGTGAAACAAGTACAAGCAAATATCCTTGCAGTGATTGTTATCCACTTTCTTGCAGCCACTTAAGTTCAATACACGTAATAGTGGGAAGCTTGAGTAGGCAGGAAATGAATTGAAGCCTTTGAAAAAAATTAGTGACCTGACATGCGACAAGTTCGAAATAGATAACTGCTTGAAATCATCTTCATGTGCGTTTTCATTCTCTATTTTACTGGCCAACATACTCGCTATGGTAATGATAGCCAAGGGTACTCCGCTACATTTCTTCAAAATTCTCTCTGACAATTCAGCCAACTGAGGAGGACATTTGTCTTCAGCACCAAATATTCTCAGATTAAACAATTTCCTTGAGTCAACATGACAAAGAGGTTTTAGTTGATAAACACCACCAACTTCTTTTGCAACATCAACATTGCGAGTTGTTGTGATTATTCCACTTCCATTTTCACTATCAACAAAAGAACACTTGATCTTTTCCCAGGCAGATATATCCCATATATCATCAATGACAATTAAGTACCTATAAGGAAATATGAGAAGACCAATTACTTGATTTTTTTTCCTTTCAGTATGATATAGCTAATTAAGTGAAATGGTATTTATAAAAGAAAATCTGAGGGCACCAAAATAATTCATACTACCTTCGGTTTTTAATAGATGTGTTTAATTGTAGATGCATGTTTGACCATTCATCTTAGTCTAAAAATTCGTGCAGATATGAAAAATGTAAGTCACAATAAGTAGCTTTGATTATAAACCAAGTCACAATAAAACGAATGGTTCTTTTTTAGTAAGACAAATAGTCAACCCTATATCCACAAGTCAACGGTATCATTTATTAAAAACCGGAGAGAGTAGCAAGGTAGACATAAGGATGGATGGATACAAGAACATGAAACTGAGAAAGTACAGCACTAACGCACCTCTCTAGGTGACTGTGGTAATTAAATTTCTATGGCAACTATAAGGGGCGGATCCAACGGGGGTGCTGGGGGGACCTGAGTTCTCGCTACCCCGCTGGATCACCATTAATAGAAGGAGAGATGAAAGGGGAAGAAGAGGAAGAAAATGAAGAGTAGGGGGGGTGAAGAAGGAAGAAGGAGATGAGTCCCCCTTCAATCTGGTTCTGGATCCGCCCCTGGCAACTATGGTACACTTGGTACAATAATATTTTTCAAAATTTTAATTGATACATCGTTGACATTACTAAAGCACTCACTATATGTGTTCAACATTCATAAATCAAACTCACATGTTCAGAAAAAAAACTTAAGTCAGAAGAATACTAATCAAGAGCACATGATACTGATTTAGAAAAGTCCCTTGCTTTGTGCAACTAAAGCATATTTAAAAATGCATGCTATATGCAAAACTAGTGAATACCCCACGCACTACAGCGAGAAATTTTAAAATAATTCCCAGAAAACTTGGAAATCATGTACTCGTAATGCCTGAAAAGAAACTATTTTCAGAACTATAGCAGTTTACGTGGAATTGCAACACTATATGACACATGGATGGTTATGCTCGATCCAGAATGAGAGATCCAACGCTATTGGACCGGTTATTTTTGAAAATGCCCAAAATGCCCTTTACAAGATTGACAATTAATTGATTTATCCTATTAGAAATTTCATAAATTTATTATTATTATTATTGTGTATCCCCTCACACAATATATAAGTTTGTGTATACTATGTTTCAAACGAAACATTCATGTGTTTTTTTATAAAGTTATTCCTTGCAGCATATGAGAGAGGAATCATATACACAAAATAAAATAACACAAAAATATTTTGTGTAGCATAAGGAAGATTGTTTACATTAAAAACAACAATAAAAATACTATATGTAGCATATAATAGACAAATTATGTTTTATAAAAGACTGGTAATCCTAGTGTTTAATATATATACAAACTTCTATGCCATATAAGGAAGCTAAAAAGAAAAAACCATTTTTTTAACTTTTAATAGGATAAATCCATCAACACTGTATGTCTATAAGGGTATTTTGGGTATTAATTTTAAAATTATCCAACCCAATAGTATATTATAGAAACAACAGATAAACTCAATGATATATTATACAATCAATGGCAAATCACTGAACTGATGTACATAGAGTAAATTTTCTCTTCATTTTATTTTATAATTTTTACTTTATTTCTCTTGTTTAGTATATTTGTATTGAAACACTTTAGCTGACTAATAAAATATCTTGGCATGCTCTTGGCGACGTATATGCATGTTGGTACTAAAAGTCCAAACAAATTTGACTACCGTCTTCTCAGAATTCCTGCTACCAATCAAAACAAAATTTACTTCCCTCCGCTTCAATGACGTACACTGTTGCTTGAGCTGATCCAACTCGGTTTTCCTTGGCAAGACTACTCATATAGCTGATATAATACTTACTCAACAAAGTACAAAGTTACTACTAGACTATCTACGAGTGTAAAATAGAAGATTACGTAATAAAAAAATACAGAATTGACCGTTTGATTAGACCATAGGAAAACACAGAAATTGAATGAGAGAGAGACTCAGAGAAAATTTTTCAAGGTTGAAGCTCTTGCTAAGTTTCCTCTAAATCTATACGTAATAGTAAGATATTCCATAGGATTTCAGAAACTCTAATCCTTTATATCAAATGGCCAAATAGAAAATGATTTGAATCCAATGAAACTTCTTTATAAATCCTTCTAATCAAAAGGACCCTAGTCAATATCATTTTAGCTTCTATCCGGCACCATACAAGCTACGTTTAGCTCATGGTAAAACCCAAATCCACTTGCTCATTTTACTACGGTCATTGCTTGTGTAATTATCTAGCTTGCATACACATACTTTGTTCTTAAGCATACTTATTTGATCTTTGCTCTCATGACTACAAAGTAATATCCTACAACAGATACGTAGGTATAAGTCAATATATCATAGACATATATACATATATTAAGGCGAGTCTCATCATGAATTATAATTTGAGGATACCAGCCACTACAATTTAGTAACAGATCATAATGATTATGCATACACATATATGAACCACTTATACGCACCTTTTGTTTCTAAGGAATTCTCTCAGTTCTGCGATGAGTTGTGCTTCATCCCATGTTACCTCATTGATGTTCCGATACTTTTTCTTATCAAACTGATGGAGCATATTCTTGAATATCTTCTCCATGTTAGGAGTAAGAGAGACGGGAACAAAGGCAAAGCAATAGAATTGTGTTTTAAGCCTCTCATACACAACATTAGCCAGAGTCGTCTTTCCTAATCCTCCAACTCCGACAATCGAAACTATCTTCAATTTCTGCTTCGACTCTTCACTCACATCCCTTTTTCTTTTTCTTATCGATGACTCGCCTGTCCCCATTAGCATTCTTACAAGCTCATCGCTCTTCTCATCGATGCCAACAAACTCGTTTACCCTTTTATACAAGGCTATCAACGGTTGGTCCTATAGGCTTGGTCAAAACGCCATCAACCTTGTACCTATCATGCCGATCATTCACCTCCTTGATGCGGCTCTTGATCCCTTTGATGTCCGTGCCGATCTTGTGGCGAAACTTGGCTCTGTTCAGCAAATCCATGCTTCTGTAAACAAAGCCCCCGAAGCTACACGAGTTGTTCGGCGTACGGCTGTCGATACACACCATGAACTCGTCGACGCTGTCCTCGATGTCATACGACAGATCCCTGACGTCCCTAGCCCAGATCTTGACTTGGCGGTCAGGCGGTTGGTCGATCGGCGCCTCAGAAACCTTGAGGAGTGCAGCCTCCATGCTCTCCAGCTCGGATTTCAAGAAGGTGATCTCCTCCCTGAGGTTCCTGTGAAGCTTATACTCCTCCTTGAGCAGGTTGCCCAGCTTGGACAGCAAGGCGCCCATCGCCCCAGTCACCACCTCCATCCACGCTCCAGCTCTGCTGATCAAACTAAGTTTGGCTTTAATTTCCAACGACGGCCGATCGATCGAGAACCTACAGGGTTCCAATATCCCCAAAATCAAAGTGCCCTAGCGAAAAAAAATCAATCAAGCCTTTTATATATATCATGAAATATGTGGAACAAGAAACACACAGGAGAATCGCACTCAATTTTCCATAAGCCAACGAACCTTAATTAGCGCCCGCGGCGCGAGCGCGACGGCCGGCGGTCGCGTAGAGCAATCGACATGATGGCGGGTCGCCGAGGTAGCTAGCTGCAGCCTGCAGTGAAAGCAGAGATCGAGATT

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CDS seq

ATGCTAATGGGGACAGGCGAGTCATCGATAAGAAAAAGAAAAAGGGATGTGAGTGAAGAGTCGAAGCAGAAATTGAAGATAGTTTCGATTGTCGGAGTTGGAGGATTAGGAAAGACGACTCTGGCTAATGTTGTGTATGAGAGGCTTAAAACACAATTCTATTGCTTTGCCTTTGTTCCCGTCTCTCTTACTCCTAACATGGAGAAGATATTCAAGAATATGCTCCATCAGTTTGATAAGAAAAAGTATCGGAACATCAATGAGGTAACATGGGATGAAGCACAACTCATCGCAGAACTGAGAGAATTCCTTAGAAACAAAAGGTACTTAATTGTCATTGATGATATATGGGATATATCTGCCTGGGAAAAGATCAAGTGTTCTTTTGTTGATAGTGAAAATGGAAGTGGAATAATCACAACAACTCGCAATGTTGATGTTGCAAAAGAAGTTGGTGGTGTTTATCAACTAAAACCTCTTTGTCATGTTGACTCAAGGAAATTGTTTAATCTGAGAATATTTGGTGCTGAAGACAAATGTCCTCCTCAGTTGGCTGAATTGTCAGAGAGAATTTTGAAGAAATGTAGCGGAGTACCCTTGGCTATCATTACCATAGCGAGTATGTTGGCCAGTAAAATAGAGAATGAAAACGCACATGAAGATGATTTCAAGCAGTTATCTATTTCGAACTTGTCGCATGTCAGGTCACTAATTTTTTTCAAAGGCTTCAATTCATTTCCTGCCTACTCAAGCTTCCCACTATTACGTGTATTGAACTTAAGTGGCTGCAAGAAAGTGGATAACAATCACTGCAAGGATATTTGCTTGTACTTGTTTCACCTAAGGTATTTGAACCTGTCCAGGACATCTGTTACAGAGATCCCGAGAGAGATCGAGAATCTACAATCTTTACAGGTACTGTGCATAAATGGCATCGAAATAGAAGATTTGCCATCCACCTTTGTTCGACTAGGACAAATTTTGTACCTCAATGTCTACTTGAAAACCCGAATACCAGATGGATTTGGGAGTCTAAAGTATCTGCAAGAACTTAAAGGAAGAATCCTCATCGGATCTCTAACCAATGTGCACGATCTTGGCAAGCTGACCGAGCTCAGGCGATTGCATATTGAGTTCCAAGGATGGGAAACGAGCTGGAAGGAACCTTTGCACCGATGTTTATCTAATCTGGTCAGCCTTGAGGACCTCACAATAGCTGGTTGCTTTGGCAGCCTAGATTCTGCATGTGATGATTCATCTCCTAGACCTCAACAGCTTTGTTCCATTGGCATGTGGAATAGCACCATCCATGCAGTGCCAAACTGGATGGTCTCCCTATCCACCCTCTCCAATCTAACTATCAAATTAGACACACTGAAAGAGAGGGACCTGCAAATACTTGGGAGCATACCATCTCTTAGTCGTCTCTATCTAGGAGTGGAGAAACCCACAGTGGACAGGGATGAGAGGCTGATAATCAGCTACCGATTCAAGTGCCTATCACTTTTCGAGTACTGGAGTGACACCATGGAGATCGAGTTTGCACAAGGAGCCATGCAGAATCTTCGAACACTTAAATTATTCATCGATGTGCACAAGACACATGATCATGTGGATTTTGGCCTGGAGAACCTCTCTGCCCTTGAGCATGCCTATTTATATCTTAACAACTGCCCTGAGGAAATGCACGAGGTTGTCGAGGCTGGAATTAGAAGACAGATCCATATGAATCCCAACAGCCCCACACTTGACTTGAGCATGTAG

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Protein seq

MLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKRYLIVIDDIWDISAWEKIKCSFVDSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRILIGSLTNVHDLGKLTELRRLHIEFQGWETSWKEPLHRCLSNLVSLEDLTIAGCFGSLDSACDDSSPRPQQLCSIGMWNSTIHAVPNWMVSLSTLSNLTIKLDTLKERDLQILGSIPSLSRLYLGVEKPTVDRDERLIISYRFKCLSLFEYWSDTMEIEFAQGAMQNLRTLKLFIDVHKTHDHVDFGLENLSALEHAYLYLNNCPEEMHEVVEAGIRRQIHMNPNSPTLDLSM

Function Disease resistance protein RGA5 [UniProtKB/Swiss-Prot:F7J0N2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
LOC_Os11g34880 LOC_Os11g34880.1 Chr11 20444817 20450284 - MSU_osa1r7
CDS seq

ATGCTAATGGGGACAGGCGAGTCATCGATAAGAAAAAGAAAAAGGGATGTGAGTGAAGAGTCGAAGCAGAAATTGAAGATAGTTTCGATTGTCGGAGTTGGAGGATTAGGAAAGACGACTCTGGCTAATGTTGTGTATGAGAGGCTTAAAACACAATTCTATTGCTTTGCCTTTGTTCCCGTCTCTCTTACTCCTAACATGGAGAAGATATTCAAGAATATGCTCCATCAGTTTGATAAGAAAAAGTATCGGAACATCAATGAGGTAACATGGGATGAAGCACAACTCATCGCAGAACTGAGAGAATTCCTTAGAAACAAAAGGTACTTAATTGTCATTGATGATATATGGGATATATCTGCCTGGGAAAAGATCAAGTGTTCTTTTGTTGATAGTGAAAATGGAAGTGGAATAATCACAACAACTCGCAATGTTGATGTTGCAAAAGAAGTTGGTGGTGTTTATCAACTAAAACCTCTTTGTCATGTTGACTCAAGGAAATTGTTTAATCTGAGAATATTTGGTGCTGAAGACAAATGTCCTCCTCAGTTGGCTGAATTGTCAGAGAGAATTTTGAAGAAATGTAGCGGAGTACCCTTGGCTATCATTACCATAGCGAGTATGTTGGCCAGTAAAATAGAGAATGAAAACGCACATGAAGATGATTTCAAGCAGTTATCTATTTCGAACTTGTCGCATGTCAGGTCACTAATTTTTTTCAAAGGCTTCAATTCATTTCCTGCCTACTCAAGCTTCCCACTATTACGTGTATTGAACTTAAGTGGCTGCAAGAAAGTGGATAACAATCACTGCAAGGATATTTGCTTGTACTTGTTTCACCTAAGGTATTTGAACCTGTCCAGGACATCTGTTACAGAGATCCCGAGAGAGATCGAGAATCTACAATCTTTACAGGTACTGTGCATAAATGGCATCGAAATAGAAGATTTGCCATCCACCTTTGTTCGACTAGGACAAATTTTGTACCTCAATGTCTACTTGAAAACCCGAATACCAGATGGATTTGGGAGTCTAAAGTATCTGCAAGAACTTAAAGGAAGAATCCTCATCGGATCTCTAACCAATGTGCACGATCTTGGCAAGCTGACCGAGCTCAGGCGATTGCATATTGAGTTCCAAGGATGGGAAACGAGCTGGAAGGAACCTTTGCACCGATGTTTATCTAATCTGGTCAGCCTTGAGGACCTCACAATAGCTGGTTGCTTTGGCAGCCTAGATTCTGCATGTGATGATTCATCTCCTAGACCTCAACAGCTTTGTTCCATTGGCATGTGGAATAGCACCATCCATGCAGTGCCAAACTGGATGGTCTCCCTATCCACCCTCTCCAATCTAACTATCAAATTAGACACACTGAAAGAGAGGGACCTGCAAATACTTGGGAGCATACCATCTCTTAGTCGTCTCTATCTAGGAGTGGAGAAACCCACAGTGGACAGGGATGAGAGGCTGATAATCAGCTACCGATTCAAGTGCCTATCACTTTTCGAGTACTGGAGTGACACCATGGAGATCGAGTTTGCACAAGGAGCCATGCAGAATCTTCGAACACTTAAATTATTCATCGATGTGCACAAGACACATGATCATGTGGATTTTGGCCTGGAGAACCTCTCTGCCCTTGAGCATGCCTATTTATATCTTAACAACTGCCCTGAGGAAATGCACGAGGTTGTCGAGGCTGGAATTAGAAGACAGATCCATATGAATCCCAACAGCCCCACACTTGACTTGAGCATGTAG

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Protein seq

MLMGTGESSIRKRKRDVSEESKQKLKIVSIVGVGGLGKTTLANVVYERLKTQFYCFAFVPVSLTPNMEKIFKNMLHQFDKKKYRNINEVTWDEAQLIAELREFLRNKRYLIVIDDIWDISAWEKIKCSFVDSENGSGIITTTRNVDVAKEVGGVYQLKPLCHVDSRKLFNLRIFGAEDKCPPQLAELSERILKKCSGVPLAIITIASMLASKIENENAHEDDFKQLSISNLSHVRSLIFFKGFNSFPAYSSFPLLRVLNLSGCKKVDNNHCKDICLYLFHLRYLNLSRTSVTEIPREIENLQSLQVLCINGIEIEDLPSTFVRLGQILYLNVYLKTRIPDGFGSLKYLQELKGRILIGSLTNVHDLGKLTELRRLHIEFQGWETSWKEPLHRCLSNLVSLEDLTIAGCFGSLDSACDDSSPRPQQLCSIGMWNSTIHAVPNWMVSLSTLSNLTIKLDTLKERDLQILGSIPSLSRLYLGVEKPTVDRDERLIISYRFKCLSLFEYWSDTMEIEFAQGAMQNLRTLKLFIDVHKTHDHVDFGLENLSALEHAYLYLNNCPEEMHEVVEAGIRRQIHMNPNSPTLDLSM

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.108354 0.297972 0.434013

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_11g0550100 RBH 0.133922 0.137796 2.618561
Nipponbare | IRGSP 1.0 | MSU LOC_Os11g34970 SBH 0.0 0.0 0.000000
Nipponbare | IRGSP 1.0 | RAP-db Os11g0550100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_11g0017020 RBH 0.115232 0.000000 1.636646
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_11g0017100 RBH 0.0 0.0 0.743269
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_11g0016960 RBH 0.000000 0.0 2.404423
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_11g0016600 RBH 0.129579 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_11g0016890 RBH 0.970018 0.0 4.764341
Minghui 63 | MH63RS3 | HZAU OsMH63_11G0320800 RBH 1.1979555 3.9370895 3.534531
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_11g0019280 SBH 0.0 0.0 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_11G0330600 SBH 2.1264245 6.1214985 5.670177
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_11g0017230 RBH 0.041894 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_11g0017300 SBH 0.148575 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_11g0016770 RBH 0.0 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0071860 RBH 0.0 0.0 0.144106
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_11g0016870 SBH 0.119434 4.523183 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_11G016800 SBH 0.113983 2.011609 0.791362
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_11g0017140 SBH 0.821338 5.267231 1.813038
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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