Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_11g0160900 | OGI:11009060 | 4/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr11:2966226-2967707 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGAGTTTCTGGTTTCTGCTGTGGCAAGTGATCTTATCGGCCGGTTCATCTCTTCTTTAGCGCAAAATTACAACAACCATACTTGTAAGGAGGATGATCGTAGAAGGCTGGAGCGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGAAAGGCGCCATATCACAAATCAAGGAATGCTCCTGCAGCTAAAGGGACTTATTGAGGGATTCTACCTCGGATACTACATGCTCGACAAGATCAAGTTCCAACCCTCCGAAGAAGAGAGCATCGAAGATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTCGCAAGCGCTTTCGTTTTGCTGATGCCATAAGAAAACGCACACCAGTAGCCTTTGGTAGCAAGAGCAAAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCAGACTCGTCTACCACGTCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTTGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCAACTGCTTCTCCCATATATTTTTCTTTAAAGAAGACAATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTGTTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTTCAATCATATTTGCAGAATATGCCCGGTACTGGAATTAAGGTTGTAGTGATAGGTACAACAGAGGACATTCTTAAGTTTGGGACAGCCCAACCCATCAGGCTGAAGAGGCTGTCTGAAGAAGAGTACTGGTACTACTTCAAGGCGCTTGCCTTTGGAAGTATGGACCCTGATGAGCATCCAAAGCTAGCATCTCTGGGTATGCAGTTGGCTACTGAGATGAGGGGAGGATTTCTTGGTGCGACCGTAGTAGGTGGACTATTAAGAGCTAATCCCAGCACCCAGTTCTGGCAGAGCATGTTATTATGCATAAGAGAGGTGGCACAAAAGCACTTGTCTTCCTTTGGTGTACACCCTGAAGATCTTCTTGAAAGAAATGCCCCTCTTGATTTCACCAGGGTAGCCTTTGTGGGTGCTCAAGTTCAAGGCTGCCTGGTTTACGATGTTAGGGTGGCTGGCCCTGGAAGTGAGCTACCAAAACTAACATCACAAGATTTGAAACTGGGTGCTGATATTCCTGCTGAAGACAAGTTTGATGTGCTGGTATGGAAATCCCGCATCCCACCGTACTCTAACTACATAGTTACTTATGAGAAACAAAAACGACGGTACAAGGTTGGCAGGAGGAACCATCAAGCATTGAGAGAAATATAA
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| CDS seq | ATGGAGTTTCTGGTTTCTGCTGTGGCAAGTGATCTTATCGGCCGGTTCATCTCTTCTTTAGCGCAAAATTACAACAACCATACTTGTAAGGAGGATGATCGTAGAAGGCTGGAGCGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGAAAGGCGCCATATCACAAATCAAGGAATGCTCCTGCAGCTAAAGGGACTTATTGAGGGATTCTACCTCGGATACTACATGCTCGACAAGATCAAGTTCCAACCCTCCGAAGAAGAGAGCATCGAAGATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTCGCAAGCGCTTTCGTTTTGCTGATGCCATAAGAAAACGCACACCAGTAGCCTTTGGTAGCAAGAGCAAAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCAGACTCGTCTACCACGTCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTTGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCAACTGCTTCTCCCATATATTTTTCTTTAAAGAAGACAATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTGTTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTTCAATCATATTTGCAGAATATGCCCGGTACTGGAATTAAGGTTGTAGTGATAGGTACAACAGAGGACATTCTTAAGTTTGGGACAGCCCAACCCATCAGGCTGAAGAGGCTGTCTGAAGAAGAGTACTGGTACTACTTCAAGGCGCTTGCCTTTGGAAGTATGGACCCTGATGAGCATCCAAAGCTAGCATCTCTGGGTATGCAGTTGGCTACTGAGATGAGGGGAGGATTTCTTGGTGCGACCGTAGTAGGTGGACTATTAAGAGCTAATCCCAGCACCCAGTTCTGGCAGAGCATGTTATTATGCATAAGAGAGGTGGCACAAAAGCACTTGTCTTCCTTTGGTGTACACCCTGAAGATCTTCTTGAAAGAAATGCCCCTCTTGATTTCACCAGGGTAGCCTTTGTGGGTGCTCAAGTTCAAGGCTGCCTGGTTTACGATGTTAGGGTGGCTGGCCCTGGAAGTGAGCTACCAAAACTAACATCACAAGATTTGAAACTGGGTGCTGATATTCCTGCTGAAGACAAGTTTGATGTGCTGGTATGGAAATCCCGCATCCCACCGTACTCTAACTACATAGTTACTTATGAGAAACAAAAACGACGGTACAAGGTTGGCAGGAGGAACCATCAAGCATTGAGAGAAATATAA
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| Protein seq | MEFLVSAVASDLIGRFISSLAQNYNNHTCKEDDRRRLERILLRMHSVVEEAERRHITNQGMLLQLKGLIEGFYLGYYMLDKIKFQPSEEESIEDEVSHEIQSFALSACNSRKRFRFADAIRKRTPVAFGSKSKTNLKDVVDGLETKIADMREFVILLGSQTRLPRQPYSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDERVRNCFSHIFFFKEDNLKTGELSLNSKASQGKYLFVIEFIWDVDEAAWTKFQSYLQNMPGTGIKVVVIGTTEDILKFGTAQPIRLKRLSEEEYWYYFKALAFGSMDPDEHPKLASLGMQLATEMRGGFLGATVVGGLLRANPSTQFWQSMLLCIREVAQKHLSSFGVHPEDLLERNAPLDFTRVAFVGAQVQGCLVYDVRVAGPGSELPKLTSQDLKLGADIPAEDKFDVLVWKSRIPPYSNYIVTYEKQKRRYKVGRRNHQALREI |
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| Function | Disease resistance protein RGA2 [UniProtKB/Swiss-Prot:Q7XBQ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_11g0160900 | OsNip_11t0160900-00 | Chr11 | 2966226 | 2967707 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGTTTCTGGTTTCTGCTGTGGCAAGTGATCTTATCGGCCGGTTCATCTCTTCTTTAGCGCAAAATTACAACAACCATACTTGTAAGGAGGATGATCGTAGAAGGCTGGAGCGCATCTTGCTGAGGATGCACTCTGTTGTTGAGGAAGCAGAAAGGCGCCATATCACAAATCAAGGAATGCTCCTGCAGCTAAAGGGACTTATTGAGGGATTCTACCTCGGATACTACATGCTCGACAAGATCAAGTTCCAACCCTCCGAAGAAGAGAGCATCGAAGATGAGGTGAGTCATGAGATTCAGTCATTTGCCTTGTCTGCCTGTAACTCTCGCAAGCGCTTTCGTTTTGCTGATGCCATAAGAAAACGCACACCAGTAGCCTTTGGTAGCAAGAGCAAAACAAACCTGAAAGATGTTGTTGATGGTTTAGAAACTAAGATTGCAGATATGAGGGAATTTGTCATTCTCCTTGGTAGCCAGACTCGTCTACCACGTCAGCCTTACAGTACATATCTATACATAGATAACTGTATGTTTGGTCGCCGTATTGAGAAGGAGCAAGTCATCAATTTCTTGCTTTGCAATGATCCTCATGATCCATATGTTAGCATTCTTCCTATTATTGGCCCTCAAAGGATTGGGAAAAAAACTCTTGTGCAACATGCTTGCCTGGATGAGAGGGTGCGCAACTGCTTCTCCCATATATTTTTCTTTAAAGAAGACAATCTGAAGACCGGAGAGCTCTCGCTTAACTCCAAGGCTTCTCAAGGGAAATATTTGTTTGTTATTGAGTTCATTTGGGATGTGGATGAGGCAGCTTGGACAAAATTTCAATCATATTTGCAGAATATGCCCGGTACTGGAATTAAGGTTGTAGTGATAGGTACAACAGAGGACATTCTTAAGTTTGGGACAGCCCAACCCATCAGGCTGAAGAGGCTGTCTGAAGAAGAGTACTGGTACTACTTCAAGGCGCTTGCCTTTGGAAGTATGGACCCTGATGAGCATCCAAAGCTAGCATCTCTGGGTATGCAGTTGGCTACTGAGATGAGGGGAGGATTTCTTGGTGCGACCGTAGTAGGTGGACTATTAAGAGCTAATCCCAGCACCCAGTTCTGGCAGAGCATGTTATTATGCATAAGAGAGGTGGCACAAAAGCACTTGTCTTCCTTTGGTGTACACCCTGAAGATCTTCTTGAAAGAAATGCCCCTCTTGATTTCACCAGGGTAGCCTTTGTGGGTGCTCAAGTTCAAGGCTGCCTGGTTTACGATGTTAGGGTGGCTGGCCCTGGAAGTGAGCTACCAAAACTAACATCACAAGATTTGAAACTGGGTGCTGATATTCCTGCTGAAGACAAGTTTGATGTGCTGGTATGGAAATCCCGCATCCCACCGTACTCTAACTACATAGTTACTTATGAGAAACAAAAACGACGGTACAAGGTTGGCAGGAGGAACCATCAAGCATTGAGAGAAATATAA
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| Protein seq | MEFLVSAVASDLIGRFISSLAQNYNNHTCKEDDRRRLERILLRMHSVVEEAERRHITNQGMLLQLKGLIEGFYLGYYMLDKIKFQPSEEESIEDEVSHEIQSFALSACNSRKRFRFADAIRKRTPVAFGSKSKTNLKDVVDGLETKIADMREFVILLGSQTRLPRQPYSTYLYIDNCMFGRRIEKEQVINFLLCNDPHDPYVSILPIIGPQRIGKKTLVQHACLDERVRNCFSHIFFFKEDNLKTGELSLNSKASQGKYLFVIEFIWDVDEAAWTKFQSYLQNMPGTGIKVVVIGTTEDILKFGTAQPIRLKRLSEEEYWYYFKALAFGSMDPDEHPKLASLGMQLATEMRGGFLGATVVGGLLRANPSTQFWQSMLLCIREVAQKHLSSFGVHPEDLLERNAPLDFTRVAFVGAQVQGCLVYDVRVAGPGSELPKLTSQDLKLGADIPAEDKFDVLVWKSRIPPYSNYIVTYEKQKRRYKVGRRNHQALREI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.576587 | 0.000000 | 1.003940 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0161100 | SBH | 1.054059 | 1.859172 | 1.226377 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06210 | RBH | 0.453737 | 0.354809 | 0.279026 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0160900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004250 | SBH | 0.000000 | 0.0 | 1.058541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004300 | RBH | 0.000000 | 0.458401 | 0.337825 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004240 | SBH | 0.0 | 0.0 | 1.476316 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004150 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004130 | SBH | 0.0 | 0.0 | 2.690060 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0051900 | SBH | 0.84857 | 1.711899 | 0.677034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004220 | RBH | 0.000000 | 0.0 | 0.281950 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0052200 | SBH | 1.484537 | 1.9957225 | 5.355819 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004140 | SBH | 0.039922 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004240 | SBH | 0.614140 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004240 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0004140 | SBH | 0.402321 | 0.0 | 0.228016 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004240 | SBH | 0.0 | 1.522199 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004200 | SBH | 0.0 | 1.073598 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004210 | SBH | 0.311328 | 0.662633 | 1.232794 |
