Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_11g0004140 | OGI:11009080 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr11:3078902-3081817 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | accttagatggcgatgcgtttcccgtcagccctgtcacgccgccgccggtcgccgaacggcagccgcagctgcgcgggcagcggcggaggcggaggcgaaattttctctactgctcgcttacaatctcagtagtgtcagtagtgtgatagagcaagaggaaatcgacgcaaaaatcagatggaagtgtgatagatcgtcggtggtgtggggaggagaagatggccggagaggaaggtggttggtggtgtgagcttgctgctgcggcggaggccactcgcttcaaggttcgctcctttctctctcatatacaaatttgtgcttgtgtttatttgcgcaagcactaggaggagtgcgatctgttagtgcctaatttaatttcagtccctttcatcagttccatcgttgttgattgctcgtaaaatattctccgttccattcttactaattaaattgaccggacaaaatatggtgttttaggtgactggcataaatttgacctgctaaaattttattgtctgaagattattgtgataattttgactgcatactggagcgtgtaccagctagccccccaagtcaaatcagtctcaagcttcattccactcgtatctggactgctgcccaaaatccattggtgcatctacttttgagttcacatgaaaatccattggtgcatctactttgagttcacatggttcacatggtgattacaagttcatgtctgataatcttatgtgctttctgatgttgactaatcggctttggctctgtagaaagtaatgaaggtagaaacacataaacgtgggaatccttcgtcttactttttgagaagaaaattctggtttaggaagagttacctcatgtagacgtctttctctctgctcatgtaaattcatgtaaatcgctttcaatactagatcagaaaattcatgtaaattgctttcaatacctgcacaaatttcttgtagacgtgtttctctctgcttcgttccttctttatcatctctagaatcctggctcactatgcaaaatcccatcttgaccacttgctcctgagtcctgatagagcttggcttggtatggagattctgatttctgctgtggcaggtgaacttatcagccggttcatctcttcgctacaacaatattacagcaaccacacaagcgaggaagatgatcgtacaaggttgcagcggatcttgctcaggatgcactctgttgttgaggaggcagaaggacgccacatcacaaaccaggggatgctcctacagctaaagggacttatcgagggattctaccatggttaccacattctcgacaaggtcaccttccaacccccagaagaagagagcatcaaagatgaggtgattcacgagataaattcatctgccttgattacttcgaattcggccaagcggtttcgttttgctgatgctctaaggaaacacacaccaatttcctttgctagcaggagcacaacaaacctgaaaggtgttgttgaagatttagaaactaagatcgcggatatgagagagtttgtcatgctcctaggcagctaccctcgcctacctcgccagccttacagtacatatctgttcatggataagtgtatgtttggtcgccgtgttgagaaagagaaagtcatcgacttcttgctttgcagtgatcttcctgatacatatgtcagcattcttccaattattggtccacacagaattggaaagaaaactcttgtgcagcatgcttgccaggatgacagggtgaagagctgcttctcccatatatttttctttaaagaagatgatctgaagatgggagagctgttgcttaactccaaggcttctccagggaagtatttgtttgttattgagttcatttgtgatgtgaatgaggcagcatggactaaattccaatcatatttgcagaatatgcccagtactgaaattaaggttgtaatcattggtagaacagatgatgttactaagtttgggacaacccaacccatcaggatgaagaggctgtctgaagaagagtactggtactacttcaaggcactttcttttggaagcatgaatcctgatgagcatccaaagctagcatctctgggcatgcagttagctactgagatgaatggatcatttcttggtgcaaatatactaggtgaactcttaagagctaatcctaacactcaattctggcagagtatcttattaagcttaagagggtttgtacaaaagaacttgtgttggtttggtgtacaccctgaagatcttcttgaaagaaatacccctgttgatttcaccaggatggcctttcttggtgctcaagttcatggttgcctggtttatgatcttagggtcgctggccctgcacaaaatcagctaccaaaactaacgtcaagagaagtgttattgggaggtaatattcccgtcgaacagaagtttgatgtgctggtatggaaatctggcattccaccatactgtgattacatagctacttttgagaaacagaaaccacggcgtgtggttgggaagaggaataccatctaccactgagaaaacacaagctcaaatcttaatttgggggagaactctacaaattaagaaattatatcgtcggtaatgtaatttaaaaggcttgctctgactactattggaataatttgtacagttcagatcaatgtagcacttgtgtctctactgtaggttaaaatgtgtatatttttattaagaaaaactctgttgtatctgttcctattagtttggatatgtgaaattcagtcagttacagttgttaccctgacttgtatttgcatgtatgacggaaaccttttgtaaagaaactacttcatgtttctgactatgtgacctatgtatgaacaatttaatttacacaatatctgtttgggcatagtt
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| CDS seq | atgcactctgttgttgaggaggcagaaggacgccacatcacaaaccaggggatgctcctacagctaaagggacttatcgagggattctaccatggttaccacattctcgacaaggtcaccttccaacccccagaagaagagagcatcaaagatgaggtgattcacgagataaattcatctgccttgattacttcgaattcggccaagcggtttcgttttgctgatgctctaaggaaacacacaccaatttcctttgctagcaggagcacaacaaacctgaaaggtgttgttgaagatttagaaactaagatcgcggatatgagagagtttgtcatgctcctaggcagctaccctcgcctacctcgccagccttacagtacatatctgttcatggataagtgtatgtttggtcgccgtgttgagaaagagaaagtcatcgacttcttgctttgcagtgatcttcctgatacatatgtcagcattcttccaattattggtccacacagaattggaaagaaaactcttgtgcagcatgcttgccaggatgacagggtgaagagctgcttctcccatatatttttctttaaagaagatgatctgaagatgggagagctgttgcttaactccaaggcttctccagggaagtatttgtttgttattgagttcatttgtgatgtgaatgaggcagcatggactaaattccaatcatatttgcagaatatgcccagtactgaaattaaggttgtaatcattggtagaacagatgatgttactaagtttgggacaacccaacccatcaggatgaagaggctgtctgaagaagagtactggtactacttcaaggcactttcttttggaagcatgaatcctgatgagcatccaaagctagcatctctgggcatgcagttagctactgagatgaatggatcatttcttggtgcaaatatactaggtgaactcttaagagctaatcctaacactcaattctggcagagtatcttattaagcttaagagggtttgtacaaaagaacttgtgttggtttggtgtacaccctgaagatcttcttgaaagaaatacccctgttgatttcaccaggatggcctttcttggtgctcaagttcatggttgcctggtttatgatcttagggtcgctggccctgcacaaaatcagctaccaaaactaacgtcaagagaagtgttattgggaggtaatattcccgtcgaacagaagtttgatgtgctggtatggaaatctggcattccaccatactgtgattacatagctacttttgagaaacagaaaccacggcgtgtggttgggaagaggaataccatctaccactga
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| Protein seq | MHSVVEEAEGRHITNQGMLLQLKGLIEGFYHGYHILDKVTFQPPEEESIKDEVIHEINSSALITSNSAKRFRFADALRKHTPISFASRSTTNLKGVVEDLETKIADMREFVMLLGSYPRLPRQPYSTYLFMDKCMFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKTLVQHACQDDRVKSCFSHIFFFKEDDLKMGELLLNSKASPGKYLFVIEFICDVNEAAWTKFQSYLQNMPSTEIKVVIIGRTDDVTKFGTTQPIRMKRLSEEEYWYYFKALSFGSMNPDEHPKLASLGMQLATEMNGSFLGANILGELLRANPNTQFWQSILLSLRGFVQKNLCWFGVHPEDLLERNTPVDFTRMAFLGAQVHGCLVYDLRVAGPAQNQLPKLTSREVLLGGNIPVEQKFDVLVWKSGIPPYCDYIATFEKQKPRRVVGKRNTIYH |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0004140 | OsLiXu_11g0004140.01 | Chr11 | 3078902 | 3081817 | + | NAM | ||
| CDS seq | atgcactctgttgttgaggaggcagaaggacgccacatcacaaaccaggggatgctcctacagctaaagggacttatcgagggattctaccatggttaccacattctcgacaaggtcaccttccaacccccagaagaagagagcatcaaagatgaggtgattcacgagataaattcatctgccttgattacttcgaattcggccaagcggtttcgttttgctgatgctctaaggaaacacacaccaatttcctttgctagcaggagcacaacaaacctgaaaggtgttgttgaagatttagaaactaagatcgcggatatgagagagtttgtcatgctcctaggcagctaccctcgcctacctcgccagccttacagtacatatctgttcatggataagtgtatgtttggtcgccgtgttgagaaagagaaagtcatcgacttcttgctttgcagtgatcttcctgatacatatgtcagcattcttccaattattggtccacacagaattggaaagaaaactcttgtgcagcatgcttgccaggatgacagggtgaagagctgcttctcccatatatttttctttaaagaagatgatctgaagatgggagagctgttgcttaactccaaggcttctccagggaagtatttgtttgttattgagttcatttgtgatgtgaatgaggcagcatggactaaattccaatcatatttgcagaatatgcccagtactgaaattaaggttgtaatcattggtagaacagatgatgttactaagtttgggacaacccaacccatcaggatgaagaggctgtctgaagaagagtactggtactacttcaaggcactttcttttggaagcatgaatcctgatgagcatccaaagctagcatctctgggcatgcagttagctactgagatgaatggatcatttcttggtgcaaatatactaggtgaactcttaagagctaatcctaacactcaattctggcagagtatcttattaagcttaagagggtttgtacaaaagaacttgtgttggtttggtgtacaccctgaagatcttcttgaaagaaatacccctgttgatttcaccaggatggcctttcttggtgctcaagttcatggttgcctggtttatgatcttagggtcgctggccctgcacaaaatcagctaccaaaactaacgtcaagagaagtgttattgggaggtaatattcccgtcgaacagaagtttgatgtgctggtatggaaatctggcattccaccatactgtgattacatagctacttttgagaaacagaaaccacggcgtgtggttgggaagaggaataccatctaccactga
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| Protein seq | MHSVVEEAEGRHITNQGMLLQLKGLIEGFYHGYHILDKVTFQPPEEESIKDEVIHEINSSALITSNSAKRFRFADALRKHTPISFASRSTTNLKGVVEDLETKIADMREFVMLLGSYPRLPRQPYSTYLFMDKCMFGRRVEKEKVIDFLLCSDLPDTYVSILPIIGPHRIGKKTLVQHACQDDRVKSCFSHIFFFKEDDLKMGELLLNSKASPGKYLFVIEFICDVNEAAWTKFQSYLQNMPSTEIKVVIIGRTDDVTKFGTTQPIRMKRLSEEEYWYYFKALSFGSMNPDEHPKLASLGMQLATEMNGSFLGANILGELLRANPNTQFWQSILLSLRGFVQKNLCWFGVHPEDLLERNTPVDFTRMAFLGAQVHGCLVYDLRVAGPAQNQLPKLTSREVLLGGNIPVEQKFDVLVWKSGIPPYCDYIATFEKQKPRRVVGKRNTIYH
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_11g0004140 | OsLiXu_11g0004140.02 | Chr11 | 3079965 | 3081786 | + | IsoSeq | ||
| CDS seq | atgtgtatatttttattaagaaaaactctgttgtatctgttcctattagtttggatatgtgaaattcagtcagttacagttgttaccctgacttgtatttgcatgtatgacggaaacctt |
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| Protein seq | MCIFLLRKTLLYLFLLVWICEIQSVTVVTLTCICMYDGNL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.402321 | 0.0 | 0.228016 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0161100 | SBH | 1.054059 | 1.859172 | 1.226377 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g06290 | RBH | 1.095453 | 1.676539 | 0.145634 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0161100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0004250 | RBH | 0.000000 | 0.0 | 1.058541 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0004330 | RBH | 0.039395 | 0.329779 | 0.489177 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0004240 | RBH | 0.0 | 0.0 | 1.476316 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0004170 | RBH | 0.000000 | 0.056272 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0004150 | RBH | 1.352914 | 0.000000 | 1.202811 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0051900 | RBH | 0.84857 | 1.711899 | 0.677034 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0004240 | RBH | 0.052071 | 0.227535 | 0.147178 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0052200 | RBH | 1.484537 | 1.9957225 | 5.355819 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0004160 | RBH | 0.177316 | 0.041584 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0004240 | RBH | 0.614140 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0004240 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002130 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0004260 | RBH | 0.056410 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G004220 | RBH | 0.299634 | 0.0 | 0.339076 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0004210 | RBH | 0.311328 | 0.662633 | 1.232794 |
