Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_10g0493100 | OGI:10048420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr10:18718071-18722354 | ||||||||
| Gene Symbol | PPR1 | ||||||||||
| DNA seq | AAATAATTTGTAACCAGGATGGGCTTCGTGCAACTTCACTCTCGCACCACAGATCCGGGATCAAGGGGAGATTTTCATGAGGAAAACTATTGGTGGCCATTGGGGCATGGTTAAGACTGGGGATAGTGCATGATGTTTCGCATACGCTATACCAGACGGATCTCAGCTAGATTGACACCACCAACACCAATGACAGACAGTCACAGACTCCAGATAACTATTTGGAATCCGCAATTCGACAGAGCCACCTGGATACCTGCAAAGAGATCATCACTCAATGATTATGAGGACAAAATTCATGTTTGTGTCCTGTAAAAATTCAGTCTGCGTAAGCCATACCCAGTGAGACCTGACAGTCTTCGGTAATCCTCACGTCCATGGATCTGCTCCGCAGCCTGAAAAGAATGAAATTTAAATCTATTAAGCACTGAAGAGAACAAAAACATACATTCAGATGCATCAGAGAGGCATCAGGTGTACCAGGAAACAAGGAAATAAAAAATGAGAAAAGATCAACACCCAACTAAGAAAACTGGTAAGCAACAGTAGCAGAGAACAGCTGAATAACTGAATCTAGGGTTTGCAACAACATGGTAACAATTGAATAGTGTTACCAATGATAGATATTAGAGTGGGCACAAGACAGAAGGATATATTTGGACCACCATGACATATTCTAGAATATTTTTGTCCTTTTTTCAGACGTCTGAACCATCATGGAAGAAAATAGACATAATGCAACAGTCATATATATGGTTTCATGTTTCTAATGGAAACATATCAGGCGAGGGCCATTTGCAAAGAAGAGGCAAGCTAACGCATTGGAAATGTACCTCAGTATAATCATAAGCATTGGAATTTCCAGCTCTGGTGATTCCTAATTGTTGCACATTACTATTCCCAGCTCTCGAGAGGCCTAATTGTAGTGTACCCTACTAGAGTACCTATCAGTAGGTACTTGGTCAAGATAAGAACGGCGGGACATATAATCGGCACCAGGACTAATAGATGAGGGCAGTTCTCTACTAGGCAAGCGAGTAGTTGCTGCATATCTGTCGTATGAAGCAGATGGTGACTTTGCTACTTCCACTACGGTACTCTCTTTTAGAGAAGTACTCTACAGGATACACGGTGTAAGGATCACGAGGCCCATCATTGTTCAACCGTCCGTATGATGTATCATTGGCAGGTCTTCTATATGGTGGATCATTGGAAGGTCTTCCATATTGTGGATATTGGTCTTCCATATGGTGGATCAATGGCAGGTCTTCCATATGGTGGATCATTAGCAGGCCCTCCATATGGGGGACTATTGGCAGATCGTCCATATAGCATGAATTCCCTGTTAGGCAAGATGTCAACAGGAGGACCATCAAAAGGGGCAAAAGGTGTCGGATTATTGGAAGAACTTCCATCTCTGAGTGTCCTAGTTCAAAGCCTCGAAGCAATCTCTGTCAGGGCTCCTCTTGCAATAGCTGGAAGCCCAGCAACCTGAAAGCTTGGAACAAATGTAAAAGCACAATGAAATGTTAACAAGTAAAAGCTGCAGTTATAAAAGTAATATATGGATCTCTGGTGTAGGTATGGCCAAATAAATTACCTGCACAAGCTCCTCATCAAAAGACAGGTACTTAGGTTTATCTGCTTTTGAGTAGACTGGGATTTCAGCCCCCAGTCCATCTTCTCATTTCAGTAATTACCTTTCCACCTTCCCCAAGAATACAACCAACTTTGTTTGATGGTACAACAAGCCGTGTTGTCAACTGGTGGTTCTCAGCAAGTGTACTTACTTTACTATGGAGCAAAATAAGCGCCTCAATTGTTGGAGACACTGGATCATCTGGAATCTGGAAAGAATATGTAGGAAGATATAAAATTGTAAAGACTCGTGATAAAAATGGCAAGGCAATGACAATTGGAATAATCATCTGCATATTACCTCCTGAGATGAAACAACAATTAACCTTTCTTCAGAAGCATTTTTGCCAACTTCTTTAACCTGAACGCAAGCACCTGTCTGCACCTAAAATATTGGATGCAGGTTCAAATTGAATGAACAGGTTTTATAAAATTTAGAAGCGCAGAAATGCAGCATGCCACACACCACATAACTTTTATTCAGGAAATAGGATTTAGTTCTGTATTTATTCCAGAAAAGAATGTCTTCCATGTAATCGGAAAATAAGCTAATGGAATAAGTTCTTTGACAAAATCCATTTCACACTGGAAGGTAGGTCTCAGCCATGATCAAGTGCCACAATATCTTGAAAGAAATTAAGGGAGGTAGCAGCGAAGAATCAAGAGAGTGCTTAAGGTGAAAAAGAAAGGAAAGGAGAAGTGATCCGTACCATAAATTGATCAGTTCGGAGCAGTTGGCCTTGATGCAGCGGAGTCCACTACGGACGGGAGGCCTTGATCTTGCCCTCCACTGAGTATGCCTTGTAGCTCACCACGCGCCGTCCCCTCCTCTCTGGGTCACTGACATACCTCGCTATTTTCACTGTTCTATCATACAATTGGTTTGGAGAAGGGATAGACAGTGATCCCACATGTCAGAATTTTGAGAGTTGGTGGTGTGGGGTGGTGGCAGATTCACCACTCACCACCACCACTACTCCTTTTAAAGTAGTATAGATTTACAGCTATTATCTGTGGGTAGCCAAAAGATTATAGAGACAAAGAAATCATGCTGTCATCCTTTATTCCATGTTTAAGAATGGGACAGTTCATGAGACTGAATGTCCCAGGATTAAGCTCAAAACCCGTGGAGCACAGGTTGTGAAACATCTTTGGAACGCTTCATGAGCACAACAGTATTTTACAAAATTGTTCTAGAATAATAATGTATGTGGTGTTATCCATCTCACTCCTTGCTGCCTCACACAGGTAAATAGAAACATCATTCCATCAGATATTTCATGATTAGTATATGTGCATATTAATACGTTGAGATAAGATAATCAGATCGAAACCATTTTATACAATCCAATCTTGTTCCTGAATAAAAGTTGTGTGGTGTGTGGCATGCTGCATTTCTGCGCTTCTAAATTTTATAAAACCTGTTCATTCAATTTGAACCTGCATCCAATATTTTAATTGCAGACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAATGCTTATGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGGTATGCAGCCGAGCTCGGTCATTCTGCGGAGCACTATGTCCATTGCGTCGCTCGTCCTCTTGTCGGCACAGAGGCCCTTGAGCAGAGGTGTGAAGGTGATGGCTTCCACTCTAAATCCCTTCTTAATGACATTGCCCAAGGCCGCGAAACCGAGGTCCAAGCGGCCCGCGCGGCAGCAGCAACCGATGAGAATGCCGTAGGTGCACAAGTCGGGAGTTACCTCGTCGGCGCCGGCTCGGGCCATGCGGTTGTAGCGGGACACGGCGGCCGCGGGGCTGCCACGCGCGACGTCGGCGAGGGAGCGGTTCAAGCCGTAGATCGAGGCGCCCCTTCCACGCCGGAGCAATTCGTCGAACACGTGGCGTGCGTCCTCGGCGCCACCGCCACCGCCCCCCGCGCGGCCCCCTCGCCCTTGGATCGAGCCCTCCGAGCGAAGGGCGCGGGAAGCGGCGCGGCGCGCCATGCCCGCCCTAGTGCGAAGCTCGCCGATCGGCGCCGCCCTGACCTTGTCGCCGGAGAGGGAATTGGGGAAGGAGATGAGGGGCGCCGGCGTGAGTGTGAAGAAAATTGCGTAGGAGACGAAGTCCTCCAAACATCAGAAAGACCGTGCTTTTTCTAGTTGACACGTGTATGAGCACGAATCTTGAAGCAATCGCCATCTACCTCTAGCCCAACTTCCCCCCCTCCCCCTTCTCTCCTCTCCCTAGTCTTCCGGCCTTCCCTGACCAGAGTTCCCCTCTCTCGTTGAGTACACTATGGTCAATTAGTGATGTTTGTTGTGGGTTTTCTTGGTGAATCTCGCATTACTTTTATCTCAAATTCTCAATCACTGGTTTCCAGATTTCATTCACACTTTGTGAGCGTCGAGTACCCAAGTTTGATCTATGATTCAACCTATATGCCAAACAATTAATGATTTGTCTGTCAAAATTATTCATGGGCATGTAAATAAAGGACATACAGCTGAATTAAGTTAAGAAAACTCACAATTTCTTGATACCGTATGCCGTATCGACCAATCTCCACAGCTGGGACTGTAGGTGCTGCCGGCGAGCAGCCATCCAATGCCAGGCTTGGTGTGCAGAAGGGCAGATGTGCGGGGAT
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| CDS seq | GTCTCCTACGCAATTTTCTTCACACTCACGCCGGCGCCCCTCATCTCCTTCCCCAATTCCCTCTCCGGCGACAAGGTCAGGGCGGCGCCGATCGGCGAGCTTCGCACTAGGGCGGGCATGGCGCGCCGCGCCGCTTCCCGCGCCCTTCGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCGGTGGCGGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGAAGGGGCGCCTCGATCTACGGCTTGAACCGCTCCCTCGCCGACGTCGCGCGTGGCAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCGACTTGTGCACCTACGGCATTCTCATCGGTTGCTGCTGCCGCGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACACCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCGGCTGCATACCTCCTGAGATGAAACAACAATTAACCTTTCTTCATAAGCATTTTTGCCAACTTCTTTAA
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| Protein seq | VSYAIFFTLTPAPLISFPNSLSGDKVRAAPIGELRTRAGMARRAASRALRSEGSIQGRGGRAGGGGGGAEDARHVFDELLRRGRGASIYGLNRSLADVARGSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPPEMKQQLTFLHKHFCQLL |
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| Function | Protein Rf1, mitochondrial [UniProtKB/Swiss-Prot:Q76C99] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493100 | OsNip_10t0493100-02 | Chr10 | 18718071 | 18721858 | - | RAP2018-11-26 | ||
| CDS seq | TGGACTCCGCTGCATCAAGGCCAACTGCTCCGAACTGATCAATTTATGGTGCAGACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGTAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTCTTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGATGGACTGGGGGCTGA
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| Protein seq | WTPLHQGQLLRTDQFMVQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHQLTTRLVVPSNKVGCILGEGGKVITEMRRWTGG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493100 | OsNip_10t0493100-01 | Chr10 | 18718146 | 18722354 | - | RAP2018-11-26 | ||
| CDS seq | TGGACTCCGCTGCATCAAGGCCAACTGCTCCGAACTGATCAATTTATGGTGCAGACAGGTGCTTGCGTTCAGGTTAAAGAAGTTGGCAAAAATGCTTCTGAAGAAAGGTTAATTGTTGTTTCATCTCAGGAGATTCCAGATGATCCAGTGTCTCCAACAATTGAGGCGCTTATTTTGCTCCATAGTAAAGTAAGTACACTTGCTGAGAACCACCAGTTGACAACACGGCTTGTTGTACCATCAAACAAAGTTGGTTGTATTCTTGGGGAAGGTGGAAAGGTAATTACTGAAATGAGAAGATGGACTGGGGGCTGA
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| Protein seq | WTPLHQGQLLRTDQFMVQTGACVQVKEVGKNASEERLIVVSSQEIPDDPVSPTIEALILLHSKVSTLAENHQLTTRLVVPSNKVGCILGEGGKVITEMRRWTGG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_10g0493100 | OsNip_10t0493100-03 | Chr10 | 18721019 | 18721830 | - | RAP2018-11-26 | ||
| CDS seq | GTCTCCTACGCAATTTTCTTCACACTCACGCCGGCGCCCCTCATCTCCTTCCCCAATTCCCTCTCCGGCGACAAGGTCAGGGCGGCGCCGATCGGCGAGCTTCGCACTAGGGCGGGCATGGCGCGCCGCGCCGCTTCCCGCGCCCTTCGCTCGGAGGGCTCGATCCAAGGGCGAGGGGGCCGCGCGGGGGGCGGTGGCGGTGGCGCCGAGGACGCACGCCACGTGTTCGACGAATTGCTCCGGCGTGGAAGGGGCGCCTCGATCTACGGCTTGAACCGCTCCCTCGCCGACGTCGCGCGTGGCAGCCCCGCGGCCGCCGTGTCCCGCTACAACCGCATGGCCCGAGCCGGCGCCGACGAGGTAACTCCCGACTTGTGCACCTACGGCATTCTCATCGGTTGCTGCTGCCGCGCGGGCCGCTTGGACCTCGGTTTCGCGGCCTTGGGCAATGTCATTAAGAAGGGATTTAGAGTGGAAGCCATCACCTTCACACCTCTGCTCAAGGGCCTCTGTGCCGACAAGAGGACGAGCGACGCAATGGACATAGTGCTCCGCAGAATGACCGAGCTCGGCTGCATACCTCCTGAGATGAAACAACAATTAACCTTTCTTCATAAGCATTTTTGCCAACTTCTTTAA
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| Protein seq | VSYAIFFTLTPAPLISFPNSLSGDKVRAAPIGELRTRAGMARRAASRALRSEGSIQGRGGRAGGGGGGAEDARHVFDELLRRGRGASIYGLNRSLADVARGSPAAAVSRYNRMARAGADEVTPDLCTYGILIGCCCRAGRLDLGFAALGNVIKKGFRVEAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPPEMKQQLTFLHKHFCQLL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.446646 | 0.523349 | 2.516264 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os10g35090 | RBH | 0.421598 | 0.068380 | 0.571143 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os10g0493100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_10g0015890 | SBH | 0.092648 | 0.0 | 0.752496 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_10g0015940 | RBH | 0.180578 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_10g0015330 | RBH | 0.389627 | 4.284258 | 7.085950 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_10g0015870 | SBH | 0.063017 | 0.018916 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_10g0016040 | SBH | 2.907954 | 13.057494 | 14.280411 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_10G0313900 | SBH | 7.963998 | 15.610822 | 18.6903055 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_10g0015760 | SBH | 0.021628 | 0.078961 | 0.179348 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0336700 | SBH | 14.8875525 | 14.265312 | 27.1701235 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0015330 | RBH | 0.162440 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_10g0015220 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_10g0016090 | SBH | 1.382853 | 1.473791 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_10g0015840 | SBH | 0.141397 | 0.0 | 0.060239 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_10g0015870 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_10G015840 | SBH | 0.387500 | 0.839234 | 1.622123 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_10g0015740 | SBH | 0.000000 | 2.824416 | 1.987071 |
