Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_08g0538800 | OGI:08076520 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr08:26932311-26935259 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GCAAAAGTAAAGACAAATTTTCAATTTCATCATTCCATAAGCTGATAAAAAAAACCACAGCATTGTACATTTGAAATGGATATATTTGGTTGATATGGAACTCCTAAGCTTTTACATTAGGAAGGACTCCGCCACTAGTAGCTCATTGATCCCAAAAAGAGTGTTGCATATAGCTTCTGTCTCAAAATGAGACTCATCTCCCGCAAAGAATTCATGTATGCAGCCATCGACTTCAATGAAAGAGCAACCGGGCTTCTTACTTGTCCTACTATTGCCCATCCCTGTCCGCACATTATTCACATCAACCCATCTTAATGTGGTAGCATATACATTAGAGAGTAAAACATGCCCTCCACACCTTTTTGGTTCCAACTGTTCAATTCTTTCTGCTGCATATTCTGCAAGCCCCACTTGTCCAGAAGCTCTACAGGCAAACAACAATGACCGCCATACTACCACATCAGGAGCGACAGGCATATCTTTAATGAATTGCTCTGCCTCTGCCAACAGCTTGGCACGTCCCAAAAGGTCGACCATGCATCCATAGTGTTCGATTCTTGGCACAAGGTTGTAGACCTTGGACATGCGATGGAAGTGATGGTACCCCTGTTCCACTAAACCTCCATGGCTGCAAGCAGTTAGCACACCCAAAAAAATGACCTCATTCGGCATAACCTTATCTTCTCCTTCCATCTGTGCAAACAAATCTAGTGCCTCAACGCAGAGACCATTCATAGCAAAGCCCATTATCATTACTGTCCAAGTAAACACATCCCGCTTTGTCAATCCATGAAATATCTGATAGGCCTTGTTTACATCCCCGCACTTCGAGTACATATCAATCAACGAATTTTTCACAGAAAGCTCTTTCCCTAAACCATGACCATCACAATAAGCATGGAGATACCGTCCCAAGTCAAGTGCTCCCATCTGGCCACATGATGATACAACAGTAGCAATTGTAGCGTCATCAGCCTTCACACCAGCAATTTGCATGTCCCTAAACAGATCAACAGCCTCTTTAAACCTACCAGATTGTGTACATCCAGCAATCATTGAGGTCCAGCAAACTACATTCCTTTCAGGCATTCTATTAAAAACCCTGCGAGCTTCCTCAACCATACCACACTTTGCATACATACTAACCAAAGAGGATCCAATATAACAATTTATCTCAAACCCATTCAGCACAACTAGAGCATGACAAAGGCTCCCAACCTTCATTGCGCCTGTCCTTGCACAAGCAACCAGCACATTTAACAGAGTGACCTCGTCCAGCCTAACTTGCTCTTTGGCCATTTGGTGAAAAGATTGCAACGCCTTATTAGGCATACCACCTCGTATGTATCCAGCAATGATTGTGTTCCAAGAAACTACGTCAGAGGCCCATCGTGGAGCAGAATCAAGAACTAACCTTGCAGAAGCTGGATAATTACAAGATGAGTACATGTTGATAAGGGCATTAAGGACAAATGAATCTGAAGCTAGGCTGAGTTTCAAAGAAAGGGCATGAAACTGGGAGCCAACATCAAGTGATGGGACGCGAGCGGCAGCAGAGATGGCAATGTTGAGGGAGTAGTTATCAAGTGTCATGTTGGCAAAACGGCGAAGTAGGGAGAGGAAGGAGAAAGAGAGTGATGGGATAGGCCCCAAATAGAGGGAACGGAGGACAGAGTGGACCAGCGGTAGCTTAAGGAGAAGACCCGAGACGGTTGCTCGGGAGAGGAGAATGGGGAGATGATGGTGTGAGAGAGATGAGACCGGGACAGAGAGGATACATTTGTTTTCAGTGTGCGAGCTTCTGAGAGTGGAGAAATATCGTGTCTTCCCATTGAGAATCCGAGAAGATAAGCACATTTAAACACTCTAAATGGAGCTGATTTGAGGGCAACAGAATGGGGGCAGTGGTGTTATACTGCAGCTAAGATATTATTGGAATATCGTAAACTGTTGTCCGACATCAAAACCTACATGGAAAAGGAACCTGCCATAAGAGATAATTTCTTGTGTATGGGCTTGTCACTTATGTACAAGAATGAAGAAGAAATTATGCAGCTTGGAATGATCTTTGATAAACAAATATTGTAATTTGTATTGGTGAAGTAACATTCTAGCAATACAAAGACCCCCAATATGCATATGCCGGCCAGCTCAAGGGAGTCAGCGGGTATTCTGTTTGCATCCTTGAATCCTTGGTCTTCCATTATATTTGAAGAAAGTTAAATAAAACAAAACTATCAAGGTAATGAGGATTCAGCAGAAGCCTAATTATTTTATATACTCCCTCCTTCCCTAAATGTTTAACGCCGTTGACTTTTTAAAATATGTTTGACCGTTCGTCTTATTCAAAAACTTTTGTGAAATGTGTAAAACTATATGTATACATAAAAGTATATTTAACAATAAATCAAATGATAGGAAAAGAATTAATAATTACCTAAATTTTTTGAATAAGACGAACGGTCAAATATTTTTTAAAAAGTCAACAGCGTCAAACATTTTGGGATGGAGGGAGTATTATTTATTTAGTTTGGAAACACACATGCTATTTGTACTAACAGCATCACCACGCACCAATGAAATCCAACAGAAACTAGATGTGTGCGCTGGAGGGAACGAGATTAAGGGAACCAGTCCAAGTTCGGACGGATTTCCAATCTATGTCACGCCGCCTCATCAGTCATCAAGCGCGCGCGGAGGAGGGAGGTGGCTACGAGAGAAGAGAAAACAATAATGAATACCTTGCAGACGGAGGAGGAGGTCGACCGGCCGCGTCACGTCAACCCCTCGCCGGCCCGGCCGTGCGCGCGAGGGGGGCAGGCCGCACAGAGGAGGAGGAGGAGGATAGGGCGGGGTCGCGATGCGGGGAGGCGGCTCGTCGTCCTTGTCGCCGGCGGCGCGCTCTCCGGGGAACCTCTTGCTTTTGTGGAAGGAAGAAGAAGACCATCT
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| CDS seq | ATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAA
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| Protein seq | MCLSSRILNGKTRYFSTLRSSHTENKCILSVPVSSLSHHHLPILLSRATVSGLLLKLPLVHSVLRSLYLGPIPSLSFSFLSLLRRFANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTLFGINELLVAESFLM |
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| Function | Pentatricopeptide repeat-containing protein At2g29760, chloroplastic [UniProtKB/Swiss-Prot:O82380] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_08g0538800 | OsNip_08t0538800-01 | Chr08 | 26932311 | 26935259 | - | RAP2018-11-26 | ||
| CDS seq | ATGTGCTTATCTTCTCGGATTCTCAATGGGAAGACACGATATTTCTCCACTCTCAGAAGCTCGCACACTGAAAACAAATGTATCCTCTCTGTCCCGGTCTCATCTCTCTCACACCATCATCTCCCCATTCTCCTCTCCCGAGCAACCGTCTCGGGTCTTCTCCTTAAGCTACCGCTGGTCCACTCTGTCCTCCGTTCCCTCTATTTGGGGCCTATCCCATCACTCTCTTTCTCCTTCCTCTCCCTACTTCGCCGTTTTGCCAACATGACACTTGATAACTACTCCCTCAACATTGCCATCTCTGCTGCCGCTCGCGTCCCATCACTTGATGTTGGCTCCCAGTTTCATGCCCTTTCTTTGAAACTCAGCCTAGCTTCAGATTCATTTGTCCTTAATGCCCTTATCAACATGTACTCATCTTGTAATTATCCAGCTTCTGCAAGGTTAGTTCTTGATTCTGCTCCACGATGGGCCTCTGACGTAGTTTCTTGGAACACAATCATTGCTGGATACATACGAGGTGGTATGCCTAATAAGGCGTTGCAATCTTTTCACCAAATGGCCAAAGAGCAAGTTAGGCTGGACGAGGTCACTCTGTTAAATGTGCTGGTTGCTTGTGCAAGGACAGGCGCAATGAAGGTTGGGAGCCTTTGTCATGCTCTAGTTGTGCTGAATGGGTTTGAGATAAATTGTTATATTGGATCCTCTTTGGTTAGTATGTATGCAAAGTGTGGTATGGTTGAGGAAGCTCGCAGGGTTTTTAATAGAATGCCTGAAAGGAATGTAGTTTGCTGGACCTCAATGATTGCTGGATGTACACAATCTGGTAGGTTTAAAGAGGCTGTTGATCTGTTTAGGGACATGCAAATTGCTGGTGTGAAGGCTGATGACGCTACAATTGCTACTGTTGTATCATCATGTGGCCAGATGGGAGCACTTGACTTGGGACGGTATCTCCATGCTTATTGTGATGGTCATGGTTTAGGGAAAGAGCTTTCTGTGAAAAATTCGTTGATTGATATGTACTCGAAGTGCGGGGATGTAAACAAGGCCTATCAGATATTTCATGGATTGACAAAGCGGGATGTGTTTACTTGGACAGTAATGATAATGGGCTTTGCTATGAATGGTCTCTGCGTTGAGGCACTAGATTTGTTTGCACAGATGGAAGGAGAAGATAAGGTTATGCCGAATGAGGTCATTTTTTTGGGTGTGCTAACTGCTTGCAGCCATGGAGGTTTAGTGGAACAGGGGTACCATCACTTCCATCGCATGTCCAAGGTCTACAACCTTGTGCCAAGAATCGAACACTATGGATGCATGGTCGACCTTTTGGGACGTGCCAAGCTGTTGGCAGAGGCAGAGCAATTCATTAAAGATATGCCTGTCGCTCCTGATGTGGTAGTATGGCGGTCATTGTTGTTTGCCTGTAGAGCTTCTGGACAAGTGGGGCTTGCAGAATATGCAGCAGAAAGAATTGAACAGTTGGAACCAAAAAGGTGTGGAGGGCATGTTTTACTCTCTAATGTATATGCTACCACATTAAGATGGGTTGATGTGAATAATGTGCGGACAGGGATGGGCAATAGTAGGACAAGTAAGAAGCCCGGTTGCTCTTTCATTGAAGTCGATGGCTGCATACATGAATTCTTTGCGGGAGATGAGTCTCATTTTGAGACAGAAGCTATATGCAACACTCTTTTTGGGATCAATGAGCTACTAGTGGCGGAGTCCTTCCTAATGTAA
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| Protein seq | MCLSSRILNGKTRYFSTLRSSHTENKCILSVPVSSLSHHHLPILLSRATVSGLLLKLPLVHSVLRSLYLGPIPSLSFSFLSLLRRFANMTLDNYSLNIAISAAARVPSLDVGSQFHALSLKLSLASDSFVLNALINMYSSCNYPASARLVLDSAPRWASDVVSWNTIIAGYIRGGMPNKALQSFHQMAKEQVRLDEVTLLNVLVACARTGAMKVGSLCHALVVLNGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMPERNVVCWTSMIAGCTQSGRFKEAVDLFRDMQIAGVKADDATIATVVSSCGQMGALDLGRYLHAYCDGHGLGKELSVKNSLIDMYSKCGDVNKAYQIFHGLTKRDVFTWTVMIMGFAMNGLCVEALDLFAQMEGEDKVMPNEVIFLGVLTACSHGGLVEQGYHHFHRMSKVYNLVPRIEHYGCMVDLLGRAKLLAEAEQFIKDMPVAPDVVVWRSLLFACRASGQVGLAEYAAERIEQLEPKRCGGHVLLSNVYATTLRWVDVNNVRTGMGNSRTSKKPGCSFIEVDGCIHEFFAGDESHFETEAICNTLFGINELLVAESFLM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.459534 | 1.716436 | 2.862342 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_09g0520300 | RBH | 0.116259 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g42610 | RBH | 0.987013 | 1.154446 | 0.736822 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0538800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0023760 | RBH | 0.444739 | 2.421902 | 2.193058 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0021670 | SBH | 0.0 | 0.0 | 0.516574 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0023550 | RBH | 0.471081 | 5.804913 | 3.275485 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0021740 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025470 | SBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0427000 | RBH | 1.623302 | 3.4482345 | 3.431504 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0023350 | RBH | 0.108228 | 0.000000 | 0.580642 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0447300 | RBH | 2.5965345 | 4.2032965 | 4.6861545 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0024650 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024990 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024810 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0023720 | RBH | 0.309066 | 0.071569 | 0.298531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024990 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025160 | SBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025320 | SBH | 0.0 | 0.0 | 0.0 |
