Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_09g0520300 | OGI:09059260 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr09:20321887-20323986 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATGGGTGGCTCGCCGAAGTCCTCGCCGCCGGCGAAGTCCGCAATTGATGGCAATTTGAGGGGAAAATCCACGGACCTGCACCCAGCAGCACACACTTGGATCGTCTTAGCCATCAGTGCACCGGTGTCTCTCACACTCGCGCTTACTTCGATGAGCGCCGCCGCCGCAGCAAGGGATGGGGGCCTCGCCGCGGCCACCTCCCGGATCGCCTCCCACGGCCGGGCCGGCGACGCCGCCGCGGCGCGGGCCGTGTTCGACGCGATGCCCCGCCGCGACGCCGTCGCGTGGAACGCCATGCTCACCGCCTACGCACGCGCCGCGCGGCCGCGGGCCGCGCTCGCGCTCTTCGCCCGCATGCGCGCGCCGGACGCGTTCTCGCTCACCGCCGCGCTCGCCGCGGCCGCCGCGCTCCGGTCGCCGGCCGCCGGCGCGCAGCTCCACGGCCGCCTCCTCCGCCTCGGACTGCGCGCCCCGCTCCCCGTCGGCAACGCGCTCGTCTCCATGTATGCCAAGTGCGCCCGCGCCGCCGACGCCGCTCGCGCCTTCCGGGAGATGCCGGAGCGCAATGCGCTGTCCTGGTGCTCGCTCCTGCATGCCTTTGTGGTCTCAGGCCACATGGAGCTTGCCCACGAGTTGTTCGACGAAATGCCCAGCAAAAGCAATGTCGCATGGAACACGCTGCTCATGGGGCATTCTCGCAGCGGCAATGCCAAACAATGCCTTGCTCTGTTCAACCAGATGTGGATGTCAGGACTGACTTGCGATGATGCGACGCTCTGCATTCTTGTTGATGCTTGTGCGGAGCTGCCCGACCCGTCTACTGGCTTTGCAATCCACAAGGTTGTAGTGCAAAGTGGCTGGAATGGCATCCCCGAGGTCAATAACTCACTCATTTCCTTCTACACTAAGTTCAGCTTGCTAGATTGTGCTGTGCAGATCTTCGAGTCCATGAAGACTCGAACCACTGCTTCGTGGAATTCACTGATTGATGCGCACGCAAGGTTTGGCTACATTGAGCAAGCTGCTTTACTCTTTGAAAGTGCACCCGAGACCAACATCATCTCATGGACTGCAATGATCGGAGGTTTTGCGAGGAACAGTTTAACAAGTGAGGCCCTTGCGCACTTTGTGAAGATGTTGACGCAGGAGTATATCCAACCTGATGACTTCACATTTGGGGCTGTGCTTCATGCTTGCGCATCTGCGCCATGTCTGGCCAGTGGAAGGATGGTTCACAGTTGTGCATTCCAAGGTGGATTTGCATCCTACTTGTATGTGGCCAACAACTTGGTGGACATGTATGCCAAGTGTGGAGACGTCGAGGGTGCAAACAATGTATTTGATGCCATCCATCAGAAGGACTTGGTCTCATGGAACACCATGCTGTTCGGATTCGCTATAAACGGGTTGCCAAAGGAAGCATTGGAAGTGTATGAAATCATGACATACCACAATGTTTCCCCAGATGAGGTTACATTCACCGGCTTGCTCACTGCTTGCAGCCATTCTGGTCTTCTGGAGCAAGGGAGAGCCTTCTTTGAGTCAATGATGTCTGTCCATGGAGTTCAACCAAAACCAGAGCATCTATCTTGTGTCCTTGACATGTATGCAAGATCAGGTAACATTGCAAAGGCCATTGAGATGATGGAGCAATACCCAGAAATTGTCAAGTCTCCTGGCAGCGGCCTATCTGAGGCTTTGCTTAGCTTCTGTTCATCAGAGAACCTGGATTTCTGGGTTGGAAGGAAGGTAGGAGACGATGTGGTGGCGAGGGCGCCTGCGAGAGACACGGGCTATGTCATGCTCTCCAACTTGCTCTGTGCGAGTGGGCGATGGGATGAGGCTGAGAGGGTGAGGAGAGCCATGGCTGAGCAAGGTATCAAGAAGTCTCCTGGTTGTAGTTGGATCGAAGTGAAAGGAAAAGTTAAGGTATTTGTATCAAGTGAGCAAGCAATTGATCTAACAGATACTGTGTATGGTTTAATTTACTTATTGGATTATGAAATGAGAAATAGCATGCTGCTGTGTGATGTCTAATCTTGTCTCCTTCCATCCATTTATATAGCGTTTATTTATTAATTTATTTATTTGCTATTGGAA
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| CDS seq | ATGGGTGGCTCGCCGAAGTCCTCGCCGCCGGCGAAGTCCGCAATTGATGGCAATTTGAGGGGAAAATCCACGGACCTGCACCCAGCAGCACACACTTGGATCGTCTTAGCCATCAGTGCACCGGTGTCTCTCACACTCGCGCTTACTTCGATGAGCGCCGCCGCCGCAGCAAGGGATGGGGGCCTCGCCGCGGCCACCTCCCGGATCGCCTCCCACGGCCGGGCCGGCGACGCCGCCGCGGCGCGGGCCGTGTTCGACGCGATGCCCCGCCGCGACGCCGTCGCGTGGAACGCCATGCTCACCGCCTACGCACGCGCCGCGCGGCCGCGGGCCGCGCTCGCGCTCTTCGCCCGCATGCGCGCGCCGGACGCGTTCTCGCTCACCGCCGCGCTCGCCGCGGCCGCCGCGCTCCGGTCGCCGGCCGCCGGCGCGCAGCTCCACGGCCGCCTCCTCCGCCTCGGACTGCGCGCCCCGCTCCCCGTCGGCAACGCGCTCGTCTCCATGTATGCCAAGTGCGCCCGCGCCGCCGACGCCGCTCGCGCCTTCCGGGAGATGCCGGAGCGCAATGCGCTGTCCTGGTGCTCGCTCCTGCATGCCTTTGTGGTCTCAGGCCACATGGAGCTTGCCCACGAGTTGTTCGACGAAATGCCCAGCAAAAGCAATGTCGCATGGAACACGCTGCTCATGGGGCATTCTCGCAGCGGCAATGCCAAACAATGCCTTGCTCTGTTCAACCAGATGTGGATGTCAGGACTGACTTGCGATGATGCGACGCTCTGCATTCTTGTTGATGCTTGTGCGGAGCTGCCCGACCCGTCTACTGGCTTTGCAATCCACAAGGTTGTAGTGCAAAGTGGCTGGAATGGCATCCCCGAGGTCAATAACTCACTCATTTCCTTCTACACTAAGTTCAGCTTGCTAGATTGTGCTGTGCAGATCTTCGAGTCCATGAAGACTCGAACCACTGCTTCGTGGAATTCACTGATTGATGCGCACGCAAGGTTTGGCTACATTGAGCAAGCTGCTTTACTCTTTGAAAGTGCACCCGAGACCAACATCATCTCATGGACTGCAATGATCGGAGGTTTTGCGAGGAACAGTTTAACAAGTGAGGCCCTTGCGCACTTTGTGAAGATGTTGACGCAGGAGTATATCCAACCTGATGACTTCACATTTGGGGCTGTGCTTCATGCTTGCGCATCTGCGCCATGTCTGGCCAGTGGAAGGATGGTTCACAGTTGTGCATTCCAAGGTGGATTTGCATCCTACTTGTATGTGGCCAACAACTTGGTGGACATGTATGCCAAGTGTGGAGACGTCGAGGGTGCAAACAATGTATTTGATGCCATCCATCAGAAGGACTTGGTCTCATGGAACACCATGCTGTTCGGATTCGCTATAAACGGGTTGCCAAAGGAAGCATTGGAAGTGTATGAAATCATGACATACCACAATGTTTCCCCAGATGAGGTTACATTCACCGGCTTGCTCACTGCTTGCAGCCATTCTGGTCTTCTGGAGCAAGGGAGAGCCTTCTTTGAGTCAATGATGTCTGTCCATGGAGTTCAACCAAAACCAGAGCATCTATCTTGTGTCCTTGACATGTATGCAAGATCAGGTAACATTGCAAAGGCCATTGAGATGATGGAGCAATACCCAGAAATTGTCAAGTCTCCTGGCAGCGGCCTATCTGAGGCTTTGCTTAGCTTCTGTTCATCAGAGAACCTGGATTTCTGGGTTGGAAGGAAGGTAGGAGACGATGTGGTGGCGAGGGCGCCTGCGAGAGACACGGGCTATGTCATGCTCTCCAACTTGCTCTGTGCGAGTGGGCGATGGGATGAGGCTGAGAGGGTGAGGAGAGCCATGGCTGAGCAAGGTATCAAGAAGTCTCCTGGTTGTAGTTGGATCGAAGTGAAAGGAAAAGTTAAGGTATTTGTATCAAGTGAGCAAGCAATTGATCTAACAGATACTGTGTATGGTTTAATTTACTTATTGGATTATGAAATGAGAAATAGCATGCTGCTGTGTGATGTCTAA
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| Protein seq | MGGSPKSSPPAKSAIDGNLRGKSTDLHPAAHTWIVLAISAPVSLTLALTSMSAAAAARDGGLAAATSRIASHGRAGDAAAARAVFDAMPRRDAVAWNAMLTAYARAARPRAALALFARMRAPDAFSLTAALAAAAALRSPAAGAQLHGRLLRLGLRAPLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQYPEIVKSPGSGLSEALLSFCSSENLDFWVGRKVGDDVVARAPARDTGYVMLSNLLCASGRWDEAERVRRAMAEQGIKKSPGCSWIEVKGKVKVFVSSEQAIDLTDTVYGLIYLLDYEMRNSMLLCDV |
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| Function | Pentatricopeptide repeat-containing protein At2g36980, mitochondrial [UniProtKB/Swiss-Prot:Q9SJK9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_09g0520300 | OsNip_09t0520300-00 | Chr09 | 20321887 | 20323986 | + | RAP2018-11-26 | ||
| CDS seq | ATGGGTGGCTCGCCGAAGTCCTCGCCGCCGGCGAAGTCCGCAATTGATGGCAATTTGAGGGGAAAATCCACGGACCTGCACCCAGCAGCACACACTTGGATCGTCTTAGCCATCAGTGCACCGGTGTCTCTCACACTCGCGCTTACTTCGATGAGCGCCGCCGCCGCAGCAAGGGATGGGGGCCTCGCCGCGGCCACCTCCCGGATCGCCTCCCACGGCCGGGCCGGCGACGCCGCCGCGGCGCGGGCCGTGTTCGACGCGATGCCCCGCCGCGACGCCGTCGCGTGGAACGCCATGCTCACCGCCTACGCACGCGCCGCGCGGCCGCGGGCCGCGCTCGCGCTCTTCGCCCGCATGCGCGCGCCGGACGCGTTCTCGCTCACCGCCGCGCTCGCCGCGGCCGCCGCGCTCCGGTCGCCGGCCGCCGGCGCGCAGCTCCACGGCCGCCTCCTCCGCCTCGGACTGCGCGCCCCGCTCCCCGTCGGCAACGCGCTCGTCTCCATGTATGCCAAGTGCGCCCGCGCCGCCGACGCCGCTCGCGCCTTCCGGGAGATGCCGGAGCGCAATGCGCTGTCCTGGTGCTCGCTCCTGCATGCCTTTGTGGTCTCAGGCCACATGGAGCTTGCCCACGAGTTGTTCGACGAAATGCCCAGCAAAAGCAATGTCGCATGGAACACGCTGCTCATGGGGCATTCTCGCAGCGGCAATGCCAAACAATGCCTTGCTCTGTTCAACCAGATGTGGATGTCAGGACTGACTTGCGATGATGCGACGCTCTGCATTCTTGTTGATGCTTGTGCGGAGCTGCCCGACCCGTCTACTGGCTTTGCAATCCACAAGGTTGTAGTGCAAAGTGGCTGGAATGGCATCCCCGAGGTCAATAACTCACTCATTTCCTTCTACACTAAGTTCAGCTTGCTAGATTGTGCTGTGCAGATCTTCGAGTCCATGAAGACTCGAACCACTGCTTCGTGGAATTCACTGATTGATGCGCACGCAAGGTTTGGCTACATTGAGCAAGCTGCTTTACTCTTTGAAAGTGCACCCGAGACCAACATCATCTCATGGACTGCAATGATCGGAGGTTTTGCGAGGAACAGTTTAACAAGTGAGGCCCTTGCGCACTTTGTGAAGATGTTGACGCAGGAGTATATCCAACCTGATGACTTCACATTTGGGGCTGTGCTTCATGCTTGCGCATCTGCGCCATGTCTGGCCAGTGGAAGGATGGTTCACAGTTGTGCATTCCAAGGTGGATTTGCATCCTACTTGTATGTGGCCAACAACTTGGTGGACATGTATGCCAAGTGTGGAGACGTCGAGGGTGCAAACAATGTATTTGATGCCATCCATCAGAAGGACTTGGTCTCATGGAACACCATGCTGTTCGGATTCGCTATAAACGGGTTGCCAAAGGAAGCATTGGAAGTGTATGAAATCATGACATACCACAATGTTTCCCCAGATGAGGTTACATTCACCGGCTTGCTCACTGCTTGCAGCCATTCTGGTCTTCTGGAGCAAGGGAGAGCCTTCTTTGAGTCAATGATGTCTGTCCATGGAGTTCAACCAAAACCAGAGCATCTATCTTGTGTCCTTGACATGTATGCAAGATCAGGTAACATTGCAAAGGCCATTGAGATGATGGAGCAATACCCAGAAATTGTCAAGTCTCCTGGCAGCGGCCTATCTGAGGCTTTGCTTAGCTTCTGTTCATCAGAGAACCTGGATTTCTGGGTTGGAAGGAAGGTAGGAGACGATGTGGTGGCGAGGGCGCCTGCGAGAGACACGGGCTATGTCATGCTCTCCAACTTGCTCTGTGCGAGTGGGCGATGGGATGAGGCTGAGAGGGTGAGGAGAGCCATGGCTGAGCAAGGTATCAAGAAGTCTCCTGGTTGTAGTTGGATCGAAGTGAAAGGAAAAGTTAAGGTATTTGTATCAAGTGAGCAAGCAATTGATCTAACAGATACTGTGTATGGTTTAATTTACTTATTGGATTATGAAATGAGAAATAGCATGCTGCTGTGTGATGTCTAA
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| Protein seq | MGGSPKSSPPAKSAIDGNLRGKSTDLHPAAHTWIVLAISAPVSLTLALTSMSAAAAARDGGLAAATSRIASHGRAGDAAAARAVFDAMPRRDAVAWNAMLTAYARAARPRAALALFARMRAPDAFSLTAALAAAAALRSPAAGAQLHGRLLRLGLRAPLPVGNALVSMYAKCARAADAARAFREMPERNALSWCSLLHAFVVSGHMELAHELFDEMPSKSNVAWNTLLMGHSRSGNAKQCLALFNQMWMSGLTCDDATLCILVDACAELPDPSTGFAIHKVVVQSGWNGIPEVNNSLISFYTKFSLLDCAVQIFESMKTRTTASWNSLIDAHARFGYIEQAALLFESAPETNIISWTAMIGGFARNSLTSEALAHFVKMLTQEYIQPDDFTFGAVLHACASAPCLASGRMVHSCAFQGGFASYLYVANNLVDMYAKCGDVEGANNVFDAIHQKDLVSWNTMLFGFAINGLPKEALEVYEIMTYHNVSPDEVTFTGLLTACSHSGLLEQGRAFFESMMSVHGVQPKPEHLSCVLDMYARSGNIAKAIEMMEQYPEIVKSPGSGLSEALLSFCSSENLDFWVGRKVGDDVVARAPARDTGYVMLSNLLCASGRWDEAERVRRAMAEQGIKKSPGCSWIEVKGKVKVFVSSEQAIDLTDTVYGLIYLLDYEMRNSMLLCDV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.116259 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0538800 | RBH | 1.459534 | 1.716436 | 2.862342 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os09g34870 | RBH | 0.072990 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os09g0520300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_09g0016930 | RBH | 0.073340 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_09g0016940 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_09g0017160 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_09g0016910 | RBH | 0.037667 | 0.031259 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_09g0017050 | RBH | 0.0 | 0.0 | 0.599234 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_09G0340600 | RBH | 0.313454 | 0.315224 | 0.097604 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_09g0016900 | RBH | 0.0 | 0.084720 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_09G0328700 | RBH | 0.283486 | 0.283493 | 2.0025495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0016920 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0016710 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0016770 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_09g0016670 | RBH | 0.0 | 0.0 | 0.060797 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_09g0016780 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_09G017200 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0017040 | RBH | 0.0 | 0.0 | 0.415958 |
