Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_08g0024650 | OGI:08061770 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr08:28903228-28903527 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgccagtacaccccgacgcgctcagctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactatgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtcctcggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcgaagcaatcccagcaaattccatccgataa |
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| CDS seq | atgccagtacaccccgacgcgctcagctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactatgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtcctcggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcgaagcaatcccagcaaattccatccgataa |
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| Protein seq | MPVHPDALSWGSLLAACRAHGEVERAERVMRRRTTDADADAGDYVLMSNTYASNGRHGEAVKVRRQMRRNEIDKVLGCSLIEIDGVVHEFEAIPANSIR |
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| Function | Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic [UniProtKB/Swiss-Prot:Q9FIF7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_08g0024650 | OsLima_08g0024650.01 | Chr08 | 28903228 | 28903527 | + | NAM | ||
| CDS seq | atgccagtacaccccgacgcgctcagctggggctcgctgctcgccgcatgccgcgcgcacggcgaagttgagcgcgccgagcgggtgatgcggcggcgcaccaccgacgccgatgcggacgccggcgactatgtgctgatgtcgaacacttacgcgtcgaatggccggcacggcgaggcggtgaaggtgaggaggcagatgaggaggaacgagatcgacaaggtcctcggctgcagcctcatcgagatcgacggcgtcgtgcacgaattcgaagcaatcccagcaaattccatccgataa
More
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| Protein seq | MPVHPDALSWGSLLAACRAHGEVERAERVMRRRTTDADADAGDYVLMSNTYASNGRHGEAVKVRRQMRRNEIDKVLGCSLIEIDGVVHEFEAIPANSIR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_08g0434000 | SBH | 0.530718 | 0.147540 | 0.512817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os08g33700 | SBH | 0.358899 | 0.099233 | 0.132009 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os08g0434000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_08g0008660 | SBH | 0.000000 | 1.967857 | 0.796451 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_08g0017020 | SBH | 0.0 | 0.000000 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_08g0008790 | SBH | 0.000000 | 0.000000 | 2.794920 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_08g0017290 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0025470 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_08G0449000 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_08g0025240 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_08G0467900 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0009240 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_08g0024990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_08g0024810 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_08g0025720 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_08g0024990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_08G025160 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_08g0025320 | RBH | 0.0 | 0.0 | 0.0 |
