Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_07g0663900 OGI:07067180 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr07:28013224-28014905
Gene Symbol OsSDR110C-MI2, SDR110C-MI2, SDR7-6, OsSDR7-6
DNA seq

GATCGAGCTAGAGCCAACAACGATCAGCTCCATTCTGCTTCTGCTTTATTTCTACCTTGCTAATTTTATTAGGATAGTAATTAAGCTTGCTTAATTATTCGTTCTACCAGGATGTTCAGATCAACAGCGCAACGCCTCCTCAGGTATGAGTTTGAATGTTAATTAATTAGATCAAGATATATTGAGGAAGCTAATTTGATTTAAACATGCATTTTACACAAATCTTTGTTTGCTGTCTTCGAAATTGTAAAATGCATGTTTTGAAACCAAATTGACAATACATATAGTTTTTTCATATATTTCTTCACAAACATAGATTTGTGTTCTCGCCTATATAATTATATTTGCATTGCCATTTCTATTTCTTAGTGTGTATATACATAGATAACATGATAACTTGTTGTCTGTTTTTGTAATGTTAACATGCAAGAGAAAAAAAGTGTATTTACGATATGTATAATACATTAATACTTTAGGTTTAAGGCCAGGGTATAAGGCTGCTAGTACCGCGTATTCGTATACGTACATGTGATCTGACCGCGTATTCGTATACGTACAGGGAGACGAAGAGAGTGGTTGGCCCAAGGATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGAACGCAGCCAGACATATCTAAAATAAATCAACTTAGTACGAAATATAGTATATCTAGATTCGTAGTATCAAAATGTGTCATAAGTTTATTTTAGAATTGAGTAATTAAGTAGCTAGCATGAGGTGTCCTCCATGCATAAGTACCCAACCTCATCATTGTTGGAATAAAGGATAGGGTGTGAAAAAATTCTACGAGATCAGATTTAAGTTTAGACATATTTCTC

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CDS seq

ATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGA

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Protein seq

MTTMTSTSPESLIAGGFSTAASSHQRLAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAELGPDATYARCDVADEAQVAAAVDLAVARHGRLDVMHNNAAIPGRFPQDDMASVDLADFDAMMAVNARASLAGIKHAARVMAPRRAGVILCTASAVGVLPLPAVATHSITKATIIAIVRAAAEPLARHGLRVNAISPGAVRTPVLQGKVSVMSASSPTMSDELKQMIDVDANDMMMGPEEVAMAAVYLASDEARYVTGHNLVVDGGYTVHKGADTPAAR

Function Tropinone reductase-like 2 [UniProtKB/Swiss-Prot:H9BFQ1]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_07g0663900 OsNip_07t0663900-00 Chr07 28013811 28014713 + RAP2018-11-26
CDS seq

ATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGA

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Protein seq

MTTMTSTSPESLIAGGFSTAASSHQRLAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAELGPDATYARCDVADEAQVAAAVDLAVARHGRLDVMHNNAAIPGRFPQDDMASVDLADFDAMMAVNARASLAGIKHAARVMAPRRAGVILCTASAVGVLPLPAVATHSITKATIIAIVRAAAEPLARHGLRVNAISPGAVRTPVLQGKVSVMSASSPTMSDELKQMIDVDANDMMMGPEEVAMAAVYLASDEARYVTGHNLVVDGGYTVHKGADTPAAR

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Gene Transcript Chromosome Start End Strand Source
OsNip_07g0663900 OsNip_07t0663900-01 Chr07 28013224 28014905 + IsoSeq
CDS seq

ATCGAGCTAGAGCCAACAACGATCAGCTCCATTCTGCTTCTGCTTTATTTCTACCTTGCTAATTTTATTAGGATAGTAATTAAGCTT

Protein seq

IELEPTTISSILLLLYFYLANFIRIVIKL

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.0 0.0 0.0

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) NA NA NA NA NA
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g46860 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os07g0663900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0026750 RBH 1.307228 6.429875 2.368053
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0026790 SBH 0.043597 0.834109 1.177725
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0026650 SBH 0.0 0.0 0.0
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0026390 SBH 0.000000 0.104732 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0026560 SBH 0.000000 2.420861 6.987439
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0454700 SBH 9.6727335 24.428213 2.8438605
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0027060 SBH 0.000000 0.586167 0.017986
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0467700 SBH 0.1906305 0.91372 0.1204425
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0026350 SBH 0.034735 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0026760 SBH 0.0 2.073553 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0026440 SBH 0.0 1.074969 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0026870 RBH 0.000000 0.000000 0.000000
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0026420 SBH 0.0 3.255497 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G026530 SBH 0.0 0.438149 2.376935
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0026300 SBH 0.439231 16.591320 10.141115
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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