Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_07g0663900 | OGI:07067180 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:28013224-28014905 | ||||||||
Gene Symbol | OsSDR110C-MI2, SDR110C-MI2, SDR7-6, OsSDR7-6 | ||||||||||
DNA seq | GATCGAGCTAGAGCCAACAACGATCAGCTCCATTCTGCTTCTGCTTTATTTCTACCTTGCTAATTTTATTAGGATAGTAATTAAGCTTGCTTAATTATTCGTTCTACCAGGATGTTCAGATCAACAGCGCAACGCCTCCTCAGGTATGAGTTTGAATGTTAATTAATTAGATCAAGATATATTGAGGAAGCTAATTTGATTTAAACATGCATTTTACACAAATCTTTGTTTGCTGTCTTCGAAATTGTAAAATGCATGTTTTGAAACCAAATTGACAATACATATAGTTTTTTCATATATTTCTTCACAAACATAGATTTGTGTTCTCGCCTATATAATTATATTTGCATTGCCATTTCTATTTCTTAGTGTGTATATACATAGATAACATGATAACTTGTTGTCTGTTTTTGTAATGTTAACATGCAAGAGAAAAAAAGTGTATTTACGATATGTATAATACATTAATACTTTAGGTTTAAGGCCAGGGTATAAGGCTGCTAGTACCGCGTATTCGTATACGTACATGTGATCTGACCGCGTATTCGTATACGTACAGGGAGACGAAGAGAGTGGTTGGCCCAAGGATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGAACGCAGCCAGACATATCTAAAATAAATCAACTTAGTACGAAATATAGTATATCTAGATTCGTAGTATCAAAATGTGTCATAAGTTTATTTTAGAATTGAGTAATTAAGTAGCTAGCATGAGGTGTCCTCCATGCATAAGTACCCAACCTCATCATTGTTGGAATAAAGGATAGGGTGTGAAAAAATTCTACGAGATCAGATTTAAGTTTAGACATATTTCTC
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CDS seq | ATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGA
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Protein seq | MTTMTSTSPESLIAGGFSTAASSHQRLAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAELGPDATYARCDVADEAQVAAAVDLAVARHGRLDVMHNNAAIPGRFPQDDMASVDLADFDAMMAVNARASLAGIKHAARVMAPRRAGVILCTASAVGVLPLPAVATHSITKATIIAIVRAAAEPLARHGLRVNAISPGAVRTPVLQGKVSVMSASSPTMSDELKQMIDVDANDMMMGPEEVAMAAVYLASDEARYVTGHNLVVDGGYTVHKGADTPAAR |
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Function | Tropinone reductase-like 2 [UniProtKB/Swiss-Prot:H9BFQ1] |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_07g0663900 | OsNip_07t0663900-00 | Chr07 | 28013811 | 28014713 | + | RAP2018-11-26 | ||
CDS seq | ATGACGACGATGACGTCGACTTCGCCTGAAAGTCTAATCGCCGGTGGATTCTCCACGGCGGCGAGCTCCCACCAGAGGTTGGCCGGCAAGGTGGCCGTCATCACCGGCGCCGCCAGCGGCATCGGCAAGGCGACCGCCGCGGAGTTCATCAGGAACGGCGCCAAGGTGATCATCACCGACGTCAACGACGACCTCGGCCACGCCGCGGCGGCGGAGCTCGGCCCGGACGCCACGTACGCGCGCTGCGACGTCGCCGACGAGGCGCAGGTCGCCGCCGCCGTCGACCTCGCCGTGGCGCGCCACGGCCGCCTCGACGTCATGCACAACAACGCCGCCATCCCGGGGAGGTTCCCGCAGGACGACATGGCGTCCGTCGACCTCGCCGACTTCGACGCCATGATGGCGGTGAACGCCCGCGCGTCGCTCGCCGGCATCAAGCACGCCGCGCGCGTCATGGCGCCCCGCCGCGCCGGCGTCATCCTCTGCACGGCCAGCGCCGTCGGCGTCCTCCCGCTCCCGGCGGTCGCCACGCACTCCATCACCAAGGCCACCATCATCGCCATCGTGCGCGCAGCGGCGGAGCCCCTGGCGCGCCACGGCCTGCGGGTGAACGCCATCTCGCCGGGCGCCGTCAGGACGCCGGTCCTGCAGGGCAAGGTGTCGGTGATGTCGGCGTCGTCTCCTACCATGAGCGACGAGCTGAAGCAGATGATCGACGTCGACGCGAACGACATGATGATGGGGCCGGAGGAGGTGGCCATGGCGGCGGTGTACCTCGCCTCCGACGAGGCCAGGTACGTGACCGGCCACAACCTCGTCGTCGACGGCGGGTACACCGTGCACAAAGGAGCTGACACACCGGCGGCGCGTTGA
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Protein seq | MTTMTSTSPESLIAGGFSTAASSHQRLAGKVAVITGAASGIGKATAAEFIRNGAKVIITDVNDDLGHAAAAELGPDATYARCDVADEAQVAAAVDLAVARHGRLDVMHNNAAIPGRFPQDDMASVDLADFDAMMAVNARASLAGIKHAARVMAPRRAGVILCTASAVGVLPLPAVATHSITKATIIAIVRAAAEPLARHGLRVNAISPGAVRTPVLQGKVSVMSASSPTMSDELKQMIDVDANDMMMGPEEVAMAAVYLASDEARYVTGHNLVVDGGYTVHKGADTPAAR
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Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_07g0663900 | OsNip_07t0663900-01 | Chr07 | 28013224 | 28014905 | + | IsoSeq | ||
CDS seq | ATCGAGCTAGAGCCAACAACGATCAGCTCCATTCTGCTTCTGCTTTATTTCTACCTTGCTAATTTTATTAGGATAGTAATTAAGCTT |
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Protein seq | IELEPTTISSILLLLYFYLANFIRIVIKL |
Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
Leaf | Root | Panicle | |
FPKM | 0.0 | 0.0 | 0.0 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
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Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g46860 | RBH | 0.0 | 0.0 | 0.0 |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0663900 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0026750 | RBH | 1.307228 | 6.429875 | 2.368053 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0026790 | SBH | 0.043597 | 0.834109 | 1.177725 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0026650 | SBH | 0.0 | 0.0 | 0.0 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0026390 | SBH | 0.000000 | 0.104732 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0026560 | SBH | 0.000000 | 2.420861 | 6.987439 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0454700 | SBH | 9.6727335 | 24.428213 | 2.8438605 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0027060 | SBH | 0.000000 | 0.586167 | 0.017986 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0467700 | SBH | 0.1906305 | 0.91372 | 0.1204425 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026350 | SBH | 0.034735 | 0.0 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0026760 | SBH | 0.0 | 2.073553 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0026440 | SBH | 0.0 | 1.074969 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0026870 | RBH | 0.000000 | 0.000000 | 0.000000 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0026420 | SBH | 0.0 | 3.255497 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G026530 | SBH | 0.0 | 0.438149 | 2.376935 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0026300 | SBH | 0.439231 | 16.591320 | 10.141115 |