Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0615900 | OGI:07006270 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:25372046-25376126 | ||||||||
| Gene Symbol | GATA23, OsGATA23, OsGATA23a, OsGATA23b | ||||||||||
| DNA seq | ACCTCCTGGGCTCCTCTCTCCACTACCAACCTCTCGCGGAGACCCAAACCCTAGCTCCCAAATCCCGACCAGCCGAAGCATTTCCAACGGAATTCCTCTGTTCGGCTCCTCCTCGGGGTTCAAATCGAGCTTGAATTTGTGGTTTTTTTTGGGGAGGGTTTTTTTTTTCTTTTTGGTGTTGTTTTTGGATGCGAGTGTGGCTTGGCAGGGTTGGTGGTGGTGATGCCATGATGCACATGCTGGTGGCCCCCGATGGAGGCGGCGGAGGGGAGATGCCGCCGCCGTACGGGGGAGCCGCGGCGGCGCCGCCGCCGCCGATGGAGCAGGAGCTGGAGCTCCACCGCGACAACGCCGACGACGGCCTCGACGGCCACGTGCGGTGAGAGCTTCTCTCTGTGTGTGTGTGGCAAGTCACTTGTGTTCATGAGTTCATCGGCGGTGAGGAGGTGGGCGAGGTCTCGTAGCGTCTCGCCTTTGCGTGGTATTCGGGGTTCATCCATTCTGGCGTGCTCTGGTTTAAGCTCAGAAGATTTTGTTTGTCCTGTTGCACGAGTGAATTTTAGTAAAAGAACCTTGGGCTTTCCATTTGTCGTGTTGATAGTTTTACTGTGTTTGGCCAGGTGCTTGAGGTGTGGTATATCCGGCAACGCGACGCCCCATATGCGCCGCGGCCCTGATGGCCCAAGAACTCTCTGTAATGCGTGCGGCATTGCGTACAGAAAGGTATGGCTGCGCTCTAATTTTCGATACAGAATACCGATGAGCCTGTTGTGTGATACCATGTTCAGCTATAATTCATTTCCGAGGAAATTTTATAGCTGTCTCTTGGCCATTTTCCTCCTGTTTTGGTGCATTGATGATAATCTAAAATACTAAATGTGTCTATTTCTGTTTATTTACTCAAGTAATAGTATGATTGGTTTTCTAGGGGAAAATGAGACGAATGATAGAAGCTGAACCACCTATAGATGAAGCTGCACTTGCTAAGCTGGTTCCTGAGGTAGGCATGGAATTTGAGAGTGAGGACAAGGCCTATGAATTCTACAACAAATATGCTGGACATGTTGGTTTTAGTGTTCGGAAAAGTACATCACACAAATCTTCCGGAAATATTACCAAAGTAAGGACTTTTGTTTGCTCAAGGGAAGGTTACAACAGGGACAAAAAATCATTGGAAGCAAAGAAGCCAAGGCTGGATACAAGAATTGGTTGTCCAGCGCGGTTGATTATTAAAGTCACACCAGAGAGTAAATACAGAGTCACTGACTTCAAAGCGGACCACAATCATCAGCTGGCCCCTCCTTCGACAATGCATATGTTAAGGTCACAGAGGATATTGACAGAACTTCAGTCTGGGGAAGCAGAATTGTCAGATGATTCTGTCATGACACCTACAACAAAAGCAACCGGTGATCTTGTTGTGAGACAAATTGGTTTCCTTCGAAGTATCTCTCTCCTCCCAGCAGATTATAAGAATTATCTCCGTTCAAAGCGTATGAAGGCTATGCAACTCGGTGATGGTGGCGCAATATTGAAATATTTGCAGACAATGCAAATGGAAAATCCTGCTTTCTTTTACACCATGCAGATTGATGAAGACGACAAGCTAACCAACTTCTTTTGGGCTGACCCAAAATCTAGAGAAGACTTCAACTACTTTGGTGATGTCCTCTGTCTAGACACAACTTACAAAATAAATGGATATGGCAGACCATTGTCATTATTCCTCGGAGTGAATCATCACAAACAAACAATTGTTTTTGGTGCAGCTATGCTTTATGATGAATCATTTGAGTCATATAGGTGGCTGTTTGAGAGTTTTAAGATTGCTATGCATGGAAAACAACCAGCGGTAGCTTTAGTAGATCAATCTATTCCACTTGCTAGTGCAATGGCAGCAGCATGGCCAAATACTACTCAAAGAACTTGTGCTTGGCATGTATATCAGAACTCTCTTAAGCACCTTAATCATGTTTTCCAAGGTTCAAAAACATTTGCAAAGGATTTTAGCAGATGTGTATTTGGCTATGAGGAAGAGGAAGAATTCTTGTTTGCCTGGAGAAGCATGCTAGAAAAGTATGATCTTAGGCATAATGAGTGGCTGTCTAAATTGTTTGATGAAAGGGAAAGATGGGCTTTGGCATATGAGAGACATATATTTTGTGCTGACATAATAAGTGCACTTCAAGCTGAAAGCTTCAGTAGTGTTCTGAAAAAGTTCTTGGGCCCTCAACTGGATTTACTGTCCTTCTTCAAGCATTATGAAAGAGCCGTAGATGAGCACCGCTATGCTGAGCTCCAAGCTGACTTCCAAGCTAGTCAAAGTTATCCAAGAATACCCCCAGCCAAGATGTTAAAGCAAGCTGCCCATACATATACCCCAGTGGTGTTTGAGATCTTTCGTAAAGAGTTTGAGCTGTTCATGGACTCTGTTCTGTTCAGTTGTGGGGAAGCTGGGGCAACCTCTGAGTACAAAGTCGCTCCCTCTGAAAAACCCAAGGAACATTTTGTTAGATTTGACTCGAGTGACTGCTCCTGTATCTGCACTTGTAGGAAGTTTGAGTTTATGGGTATTCCATGTTGCCATATGTTGAAGGTGCTCGATTACAGAAATATCAAAGAATTACCTCAGAGATATCTGTTGAAGCGATGGAGAAGGACTGCCAAGTCTGCAAATGAAGAAAACCAAGGGTATGTGGCAAATGGAAATGGTTCATCATTAAATTCCATTGTACCTCCTGCAAACCATCATGGTCTCCAAGGCTTCAGTGCAATGATTCAAGTAACCAATCTGCAAGATTCATTCTCCTTGTTTTCCCCCTGTATGTGCTGTGGCTGATAAAGTTTTCTATCTTGGTTAACTGCAGGACACTCCTGTTTCTAATATGCATGAGAATTCATTTCGCAGAAGCTCATGATGCAGGTATCATACATGATTATGAATTATTAATATGCCAATTTGATCTCTTGTTTTGTTTGGACTATTACTGAGCCTATCTGGTTCTATCCATTGCACCAAAACCTAGGGCATTGATTTACAACCAAAGTTTCCCCCTTCTGAGAGATGCATGACAAATTTTTTAGGGAGATTTAGATAGAATATTTTGTTTGTTGAATATTGCTCACTTGGTTCTGGATTTTCCTCCTTCGAGGTACAATTATTAAAGCAGTTTGGCGATGACACGTGGACAAACTTAGCTCTGTTGGATCAAACAGATTATTTATGTGATCAATTTATCATGCAGGTGACTTGAATCTAAACATTATTCCTTCTGCACGGTGCCTGCTCCACGATACTGGCGTTGAAGCAGTGAGAACAGGCCATGCGGAGCTCCCCCGAATAAAAGTTTCCAACTTGTAAATTATGCAGCTGTAGGAAATCCCAGCTATTGAGGCGCCCATCCTACTTAGGCTCTTAGACTAGATTCTGGTATGAAATCATATGATTGTGCTGCCCACCTGCACCCAGGGAAATTTTGTGCATTCTGTAAACAGTCTATTTATCCTAGCCCATTCATAAAAGAAAAAAAAAGGTGATCAGATGCCAATGCAGAGAGATTGCTCCTTTGAAACTTTGCAGGGCAAGCAGACCCATCATGATCATCAATCCTAGGAGGGTTTCAGTTAGATTCAGATCTTGGGGTGGTTTCATTTCGTTTCATTTCACCTGCAGGTGAGGTGAGCTGGACAGCTCATGCAATAAAACGTTGGAAGCAAGACAAGCCCAGCTTGGCAGTGTGGATCTCAAGCCCGGAGAGCTACCGGCCGAGCTAGGAGCTGCCTTTGACGCTACAGTGGACAGCTGTGCTTTCAAGCCTGGCTTTGGGCGCATTTGTCCCATATGCACAGTTGCATAATGCGTGCAAATGTTGTTCATTGTCCTCAATGCATCGTATATCTTGGGAGCTTCGATAATGCTGCTACCAATGTGTCCTTGAAAAACACATTCGAGGTGCTTTCGTGCTCGCTCTCTTTTTTCCAACTCTGTCAGGTTTCTTTTCAAACAAAGTTATTTCAGACATTTTTCTATAAAATGTCTTTGAAATATATACTTCCATTCAAAGGAAGCCTCAATGCGATC
More
|
||||||||||
| CDS seq | ATGCGAGTGTGGCTTGGCAGGGTTGGTGGTGGTGATGCCATGATGCACATGCTGGTGGCCCCCGATGGAGGCGGCGGAGGGGAGATGCCGCCGCCGTACGGGGGAGCCGCGGCGGCGCCGCCGCCGCCGATGGAGCAGGAGCTGGAGCTCCACCGCGACAACGCCGACGACGGCCTCGACGGCCACGTGCGGTGCTTGAGGTGTGGTATATCCGGCAACGCGACGCCCCATATGCGCCGCGGCCCTGATGGCCCAAGAACTCTCTGTAATGCGTGCGGCATTGCGTACAGAAAGGGGAAAATGAGACGAATGATAGAAGCTGAACCACCTATAGATGAAGCTGCACTTGCTAAGCTGGTTCCTGAGGTAGGCATGGAATTTGAGAGTGAGGACAAGGCCTATGAATTCTACAACAAATATGCTGGACATGTTGGTTTTAGTGTTCGGAAAAGTACATCACACAAATCTTCCGGAAATATTACCAAAGTAAGGACTTTTGTTTGCTCAAGGGAAGGTTACAACAGGGACAAAAAATCATTGGAAGCAAAGAAGCCAAGGCTGGATACAAGAATTGGTTGTCCAGCGCGGTTGATTATTAAAGTCACACCAGAGAGTAAATACAGAGTCACTGACTTCAAAGCGGACCACAATCATCAGCTGGCCCCTCCTTCGACAATGCATATGTTAAGGTCACAGAGGATATTGACAGAACTTCAGTCTGGGGAAGCAGAATTGTCAGATGATTCTGTCATGACACCTACAACAAAAGCAACCGGTGATCTTGTTGTGAGACAAATTGGTTTCCTTCGAAGTATCTCTCTCCTCCCAGCAGATTATAAGAATTATCTCCGTTCAAAGCGTATGAAGGCTATGCAACTCGGTGATGGTGGCGCAATATTGAAATATTTGCAGACAATGCAAATGGAAAATCCTGCTTTCTTTTACACCATGCAGATTGATGAAGACGACAAGCTAACCAACTTCTTTTGGGCTGACCCAAAATCTAGAGAAGACTTCAACTACTTTGGTGATGTCCTCTGTCTAGACACAACTTACAAAATAAATGGATATGGCAGACCATTGTCATTATTCCTCGGAGTGAATCATCACAAACAAACAATTGTTTTTGGTGCAGCTATGCTTTATGATGAATCATTTGAGTCATATAGGTGGCTGTTTGAGAGTTTTAAGATTGCTATGCATGGAAAACAACCAGCGGTAGCTTTAGTAGATCAATCTATTCCACTTGCTAGTGCAATGGCAGCAGCATGGCCAAATACTACTCAAAGAACTTGTGCTTGGCATGTATATCAGAACTCTCTTAAGCACCTTAATCATGTTTTCCAAGGTTCAAAAACATTTGCAAAGGATTTTAGCAGATGTGTATTTGGCTATGAGGAAGAGGAAGAATTCTTGTTTGCCTGGAGAAGCATGCTAGAAAAGTATGATCTTAGGCATAATGAGTGGCTGTCTAAATTGTTTGATGAAAGGGAAAGATGGGCTTTGGCATATGAGAGACATATATTTTGTGCTGACATAATAAGTGCACTTCAAGCTGAAAGCTTCAGTAGTGTTCTGAAAAAGTTCTTGGGCCCTCAACTGGATTTACTGTCCTTCTTCAAGCATTATGAAAGAGCCGTAGATGAGCACCGCTATGCTGAGCTCCAAGCTGACTTCCAAGCTAGTCAAAGTTATCCAAGAATACCCCCAGCCAAGATGTTAAAGCAAGCTGCCCATACATATACCCCAGTGGTGTTTGAGATCTTTCGTAAAGAGTTTGAGCTGTTCATGGACTCTGTTCTGTTCAGTTGTGGGGAAGCTGGGGCAACCTCTGAGTACAAAGTCGCTCCCTCTGAAAAACCCAAGGAACATTTTGTTAGATTTGACTCGAGTGACTGCTCCTGTATCTGCACTTGTAGGAAGTTTGAGTTTATGGGTATTCCATGTTGCCATATGTTGAAGGTGCTCGATTACAGAAATATCAAAGAATTACCTCAGAGATATCTGTTGAAGCGATGGAGAAGGACTGCCAAGTCTGCAAATGAAGAAAACCAAGGGACACTCCTGTTTCTAATATGCATGAGAATTCATTTCGCAGAAGCTCATGATGCAGGTGACTTGAATCTAAACATTATTCCTTCTGCACGGTGCCTGCTCCACGATACTGGCGTTGAAGCAGTGAGAACAGGCCATGCGGAGCTCCCCCGAATAAAAGTTTCCAACTTGTAA
More
|
||||||||||
| Protein seq | MRVWLGRVGGGDAMMHMLVAPDGGGGGEMPPPYGGAAAAPPPPMEQELELHRDNADDGLDGHVRCLRCGISGNATPHMRRGPDGPRTLCNACGIAYRKGKMRRMIEAEPPIDEAALAKLVPEVGMEFESEDKAYEFYNKYAGHVGFSVRKSTSHKSSGNITKVRTFVCSREGYNRDKKSLEAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKADHNHQLAPPSTMHMLRSQRILTELQSGEAELSDDSVMTPTTKATGDLVVRQIGFLRSISLLPADYKNYLRSKRMKAMQLGDGGAILKYLQTMQMENPAFFYTMQIDEDDKLTNFFWADPKSREDFNYFGDVLCLDTTYKINGYGRPLSLFLGVNHHKQTIVFGAAMLYDESFESYRWLFESFKIAMHGKQPAVALVDQSIPLASAMAAAWPNTTQRTCAWHVYQNSLKHLNHVFQGSKTFAKDFSRCVFGYEEEEEFLFAWRSMLEKYDLRHNEWLSKLFDERERWALAYERHIFCADIISALQAESFSSVLKKFLGPQLDLLSFFKHYERAVDEHRYAELQADFQASQSYPRIPPAKMLKQAAHTYTPVVFEIFRKEFELFMDSVLFSCGEAGATSEYKVAPSEKPKEHFVRFDSSDCSCICTCRKFEFMGIPCCHMLKVLDYRNIKELPQRYLLKRWRRTAKSANEENQGTLLFLICMRIHFAEAHDAGDLNLNIIPSARCLLHDTGVEAVRTGHAELPRIKVSNL |
||||||||||
| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0615900 | OsNip_07t0615900-01 | Chr07 | 25372046 | 25375591 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGAGTGTGGCTTGGCAGGGTTGGTGGTGGTGATGCCATGATGCACATGCTGGTGGCCCCCGATGGAGGCGGCGGAGGGGAGATGCCGCCGCCGTACGGGGGAGCCGCGGCGGCGCCGCCGCCGCCGATGGAGCAGGAGCTGGAGCTCCACCGCGACAACGCCGACGACGGCCTCGACGGCCACGTGCGGTGCTTGAGGTGTGGTATATCCGGCAACGCGACGCCCCATATGCGCCGCGGCCCTGATGGCCCAAGAACTCTCTGTAATGCGTGCGGCATTGCGTACAGAAAGGGGAAAATGAGACGAATGATAGAAGCTGAACCACCTATAGATGAAGCTGCACTTGCTAAGCTGGTTCCTGAGGTAGGCATGGAATTTGAGAGTGAGGACAAGGCCTATGAATTCTACAACAAATATGCTGGACATGTTGGTTTTAGTGTTCGGAAAAGTACATCACACAAATCTTCCGGAAATATTACCAAAGTAAGGACTTTTGTTTGCTCAAGGGAAGGTTACAACAGGGACAAAAAATCATTGGAAGCAAAGAAGCCAAGGCTGGATACAAGAATTGGTTGTCCAGCGCGGTTGATTATTAAAGTCACACCAGAGAGTAAATACAGAGTCACTGACTTCAAAGCGGACCACAATCATCAGCTGGCCCCTCCTTCGACAATGCATATGTTAAGGTCACAGAGGATATTGACAGAACTTCAGTCTGGGGAAGCAGAATTGTCAGATGATTCTGTCATGACACCTACAACAAAAGCAACCGGTGATCTTGTTGTGAGACAAATTGGTTTCCTTCGAAGTATCTCTCTCCTCCCAGCAGATTATAAGAATTATCTCCGTTCAAAGCGTATGAAGGCTATGCAACTCGGTGATGGTGGCGCAATATTGAAATATTTGCAGACAATGCAAATGGAAAATCCTGCTTTCTTTTACACCATGCAGATTGATGAAGACGACAAGCTAACCAACTTCTTTTGGGCTGACCCAAAATCTAGAGAAGACTTCAACTACTTTGGTGATGTCCTCTGTCTAGACACAACTTACAAAATAAATGGATATGGCAGACCATTGTCATTATTCCTCGGAGTGAATCATCACAAACAAACAATTGTTTTTGGTGCAGCTATGCTTTATGATGAATCATTTGAGTCATATAGGTGGCTGTTTGAGAGTTTTAAGATTGCTATGCATGGAAAACAACCAGCGGTAGCTTTAGTAGATCAATCTATTCCACTTGCTAGTGCAATGGCAGCAGCATGGCCAAATACTACTCAAAGAACTTGTGCTTGGCATGTATATCAGAACTCTCTTAAGCACCTTAATCATGTTTTCCAAGGTTCAAAAACATTTGCAAAGGATTTTAGCAGATGTGTATTTGGCTATGAGGAAGAGGAAGAATTCTTGTTTGCCTGGAGAAGCATGCTAGAAAAGTATGATCTTAGGCATAATGAGTGGCTGTCTAAATTGTTTGATGAAAGGGAAAGATGGGCTTTGGCATATGAGAGACATATATTTTGTGCTGACATAATAAGTGCACTTCAAGCTGAAAGCTTCAGTAGTGTTCTGAAAAAGTTCTTGGGCCCTCAACTGGATTTACTGTCCTTCTTCAAGCATTATGAAAGAGCCGTAGATGAGCACCGCTATGCTGAGCTCCAAGCTGACTTCCAAGCTAGTCAAAGTTATCCAAGAATACCCCCAGCCAAGATGTTAAAGCAAGCTGCCCATACATATACCCCAGTGGTGTTTGAGATCTTTCGTAAAGAGTTTGAGCTGTTCATGGACTCTGTTCTGTTCAGTTGTGGGGAAGCTGGGGCAACCTCTGAGTACAAAGTCGCTCCCTCTGAAAAACCCAAGGAACATTTTGTTAGATTTGACTCGAGTGACTGCTCCTGTATCTGCACTTGTAGGAAGTTTGAGTTTATGGGTATTCCATGTTGCCATATGTTGAAGGTGCTCGATTACAGAAATATCAAAGAATTACCTCAGAGATATCTGTTGAAGCGATGGAGAAGGACTGCCAAGTCTGCAAATGAAGAAAACCAAGGGACACTCCTGTTTCTAATATGCATGAGAATTCATTTCGCAGAAGCTCATGATGCAGGTGACTTGAATCTAAACATTATTCCTTCTGCACGGTGCCTGCTCCACGATACTGGCGTTGAAGCAGTGAGAACAGGCCATGCGGAGCTCCCCCGAATAAAAGTTTCCAACTTGTAA
More
|
|||||||
| Protein seq | MRVWLGRVGGGDAMMHMLVAPDGGGGGEMPPPYGGAAAAPPPPMEQELELHRDNADDGLDGHVRCLRCGISGNATPHMRRGPDGPRTLCNACGIAYRKGKMRRMIEAEPPIDEAALAKLVPEVGMEFESEDKAYEFYNKYAGHVGFSVRKSTSHKSSGNITKVRTFVCSREGYNRDKKSLEAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKADHNHQLAPPSTMHMLRSQRILTELQSGEAELSDDSVMTPTTKATGDLVVRQIGFLRSISLLPADYKNYLRSKRMKAMQLGDGGAILKYLQTMQMENPAFFYTMQIDEDDKLTNFFWADPKSREDFNYFGDVLCLDTTYKINGYGRPLSLFLGVNHHKQTIVFGAAMLYDESFESYRWLFESFKIAMHGKQPAVALVDQSIPLASAMAAAWPNTTQRTCAWHVYQNSLKHLNHVFQGSKTFAKDFSRCVFGYEEEEEFLFAWRSMLEKYDLRHNEWLSKLFDERERWALAYERHIFCADIISALQAESFSSVLKKFLGPQLDLLSFFKHYERAVDEHRYAELQADFQASQSYPRIPPAKMLKQAAHTYTPVVFEIFRKEFELFMDSVLFSCGEAGATSEYKVAPSEKPKEHFVRFDSSDCSCICTCRKFEFMGIPCCHMLKVLDYRNIKELPQRYLLKRWRRTAKSANEENQGTLLFLICMRIHFAEAHDAGDLNLNIIPSARCLLHDTGVEAVRTGHAELPRIKVSNL
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0615900 | OsNip_07t0615900-02 | Chr07 | 25372078 | 25376126 | + | RAP2018-11-26 | ||
| CDS seq | ATGCGAGTGTGGCTTGGCAGGGTTGGTGGTGGTGATGCCATGATGCACATGCTGGTGGCCCCCGATGGAGGCGGCGGAGGGGAGATGCCGCCGCCGTACGGGGGAGCCGCGGCGGCGCCGCCGCCGCCGATGGAGCAGGAGCTGGAGCTCCACCGCGACAACGCCGACGACGGCCTCGACGGCCACGTGCGGTGCTTGAGGTGTGGTATATCCGGCAACGCGACGCCCCATATGCGCCGCGGCCCTGATGGCCCAAGAACTCTCTGTAATGCGTGCGGCATTGCGTACAGAAAGGGGAAAATGAGACGAATGATAGAAGCTGAACCACCTATAGATGAAGCTGCACTTGCTAAGCTGGTTCCTGAGGTAGGCATGGAATTTGAGAGTGAGGACAAGGCCTATGAATTCTACAACAAATATGCTGGACATGTTGGTTTTAGTGTTCGGAAAAGTACATCACACAAATCTTCCGGAAATATTACCAAAGTAAGGACTTTTGTTTGCTCAAGGGAAGGTTACAACAGGGACAAAAAATCATTGGAAGCAAAGAAGCCAAGGCTGGATACAAGAATTGGTTGTCCAGCGCGGTTGATTATTAAAGTCACACCAGAGAGTAAATACAGAGTCACTGACTTCAAAGCGGACCACAATCATCAGCTGGCCCCTCCTTCGACAATGCATATGTTAAGGTCACAGAGGATATTGACAGAACTTCAGTCTGGGGAAGCAGAATTGTCAGATGATTCTGTCATGACACCTACAACAAAAGCAACCGGTGATCTTGTTGTGAGACAAATTGGTTTCCTTCGAAGTATCTCTCTCCTCCCAGCAGATTATAAGAATTATCTCCGTTCAAAGCGTATGAAGGCTATGCAACTCGGTGATGGTGGCGCAATATTGAAATATTTGCAGACAATGCAAATGGAAAATCCTGCTTTCTTTTACACCATGCAGATTGATGAAGACGACAAGCTAACCAACTTCTTTTGGGCTGACCCAAAATCTAGAGAAGACTTCAACTACTTTGGTGATGTCCTCTGTCTAGACACAACTTACAAAATAAATGGATATGGCAGACCATTGTCATTATTCCTCGGAGTGAATCATCACAAACAAACAATTGTTTTTGGTGCAGCTATGCTTTATGATGAATCATTTGAGTCATATAGGTGGCTGTTTGAGAGTTTTAAGATTGCTATGCATGGAAAACAACCAGCGGTAGCTTTAGTAGATCAATCTATTCCACTTGCTAGTGCAATGGCAGCAGCATGGCCAAATACTACTCAAAGAACTTGTGCTTGGCATGTATATCAGAACTCTCTTAAGCACCTTAATCATGTTTTCCAAGGTTCAAAAACATTTGCAAAGGATTTTAGCAGATGTGTATTTGGCTATGAGGAAGAGGAAGAATTCTTGTTTGCCTGGAGAAGCATGCTAGAAAAGTATGATCTTAGGCATAATGAGTGGCTGTCTAAATTGTTTGATGAAAGGGAAAGATGGGCTTTGGCATATGAGAGACATATATTTTGTGCTGACATAATAAGTGCACTTCAAGCTGAAAGCTTCAGTAGTGTTCTGAAAAAGTTCTTGGGCCCTCAACTGGATTTACTGTCCTTCTTCAAGCATTATGAAAGAGCCGTAGATGAGCACCGCTATGCTGAGCTCCAAGCTGACTTCCAAGCTAGTCAAAGTTATCCAAGAATACCCCCAGCCAAGATGTTAAAGCAAGCTGCCCATACATATACCCCAGTGGTGTTTGAGATCTTTCGTAAAGAGTTTGAGCTGTTCATGGACTCTGTTCTGTTCAGTTGTGGGGAAGCTGGGGCAACCTCTGAGTACAAAGTCGCTCCCTCTGAAAAACCCAAGGAACATTTTGTTAGATTTGACTCGAGTGACTGCTCCTGTATCTGCACTTGTAGGAAGTTTGAGTTTATGGGTATTCCATGTTGCCATATGTTGAAGGTGCTCGATTACAGAAATATCAAAGAATTACCTCAGAGATATCTGTTGAAGCGATGGAGAAGGACTGCCAAGTCTGCAAATGAAGAAAACCAAGGGTATGTGGCAAATGGAAATGGTTCATCATTAAATTCCATTGTACCTCCTGCAAACCATCATGGTCTCCAAGGCTTCAGTGCAATGATTCAAGACACTCCTGTTTCTAATATGCATGAGAATTCATTTCGCAGAAGCTCATGA
More
|
|||||||
| Protein seq | MRVWLGRVGGGDAMMHMLVAPDGGGGGEMPPPYGGAAAAPPPPMEQELELHRDNADDGLDGHVRCLRCGISGNATPHMRRGPDGPRTLCNACGIAYRKGKMRRMIEAEPPIDEAALAKLVPEVGMEFESEDKAYEFYNKYAGHVGFSVRKSTSHKSSGNITKVRTFVCSREGYNRDKKSLEAKKPRLDTRIGCPARLIIKVTPESKYRVTDFKADHNHQLAPPSTMHMLRSQRILTELQSGEAELSDDSVMTPTTKATGDLVVRQIGFLRSISLLPADYKNYLRSKRMKAMQLGDGGAILKYLQTMQMENPAFFYTMQIDEDDKLTNFFWADPKSREDFNYFGDVLCLDTTYKINGYGRPLSLFLGVNHHKQTIVFGAAMLYDESFESYRWLFESFKIAMHGKQPAVALVDQSIPLASAMAAAWPNTTQRTCAWHVYQNSLKHLNHVFQGSKTFAKDFSRCVFGYEEEEEFLFAWRSMLEKYDLRHNEWLSKLFDERERWALAYERHIFCADIISALQAESFSSVLKKFLGPQLDLLSFFKHYERAVDEHRYAELQADFQASQSYPRIPPAKMLKQAAHTYTPVVFEIFRKEFELFMDSVLFSCGEAGATSEYKVAPSEKPKEHFVRFDSSDCSCICTCRKFEFMGIPCCHMLKVLDYRNIKELPQRYLLKRWRRTAKSANEENQGYVANGNGSSLNSIVPPANHHGLQGFSAMIQDTPVSNMHENSFRRSS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 25374736 | 25374913 | + | OsNip_07t0615900-02 | OsNip_07t0615900-02,OsNip_07t0615900-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.649248 | 1.127824 | 3.235230 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0181600 | RBH | 0.904452 | 0.919453 | 2.112373 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42400 | RBH | 1.013731 | 0.607844 | 0.801948 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0615900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023270 | RBH | 0.687363 | 11.218546 | 3.448845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023330 | RBH | 0.383178 | 0.632424 | 2.991814 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0023960 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015390 | SBH | 0.072473 | 0.229726 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0023200 | RBH | 6.878921 | 4.672679 | 13.048926 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0415800 | RBH | 5.351067 | 11.8367555 | 13.720597 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023690 | RBH | 0.382531 | 0.882464 | 1.451395 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0426100 | RBH | 5.740925 | 14.107781 | 14.686185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0015200 | SBH | 0.038502 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015380 | SBH | 0.604177 | 2.997050 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023020 | RBH | 5.144393 | 17.033373 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023230 | RBH | 0.553296 | 0.336587 | 0.421778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015420 | SBH | 0.147920 | 0.712940 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022950 | RBH | 0.663954 | 5.745052 | 4.569552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0023750 | SBH | 0.0 | 0.0 | 0.0 |
