Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0015200 | OGI:07052920 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:19367850-19373359 | ||||||||
| Gene Symbol | GATA23, OsGATA23, OsGATA23a, OsGATA23b | ||||||||||
| DNA seq | tgtaaaaatgttcttgcaattgagaaagcgaaaaaagtgtaaacacacaacttgggggaacatgttcatcacagagaagcattgtcaacaacggcattggcattcaaaaccaaaaaataaaaataaaaataaaaaataaaaaaaattccagctcgtaaactcatcagcaacctaaggatagcaaacagccaggcaatatcaacactataaatacataacaacctctgaggcaagatcaacatcaaatagaactacttggcttgtttcacctctcctattgcatgcaccgcatctcttaaggctttgtacgcgtctccacggtccaaaccaccaatggctcagctgcttcgtcggcatctcccagtcatactttctctcatcttgttcctctctaaggctactgcagatgcaaacttcactgtgtcgagagcagcatattaccccaactctgatataaaagggaccgaaagtaagtacctttcagataaaattacttcaattgggttagcatacctcacatgaacccaaaaaaaggaagttaaattatacttaaactcggaaatgcataaagtttctaagctagctcatagaaattgtacttgtttctaattgtacttctagacggtgcatgtgagtatggcgcatttggggcaacactcaacaatggtgatgtttcagcttcagcaagcctctacagggatggggtaggctgtggtgcatgctaccaggtaatccatctgtatgactaggctgtgtgaatcattaaaaaaaaacaatcctttcatttttaccaacaatgccaattaccaataggtgaggtgcacgaatccttactattgctctccaaatggcgtcacaattgtgatcaccgactctggggcgagtgatggcactgatttcatcctcagccagcatgctttcaccaggatggcgcagagtacagatgctggtacagcgctgctaacccttggcgtggttgggatcgagtacaggaggtctgcgcatataattaatctgccaaaattcttgattgaacggcataactatttgttttcttagatgaaaaataaaatgaaaactactatagaaacaatatctgcataaggaattatggacgcatgtgctgttaccgacatgtcatggttctggtttcctctacactacagggtttcttgtacctacccaaacaagaatatcgttttcaagattactgagagcagcaatttccccaactatcttgaatttgagatctggtaccagcaaggcaaccaggacatcattgcggtccagctttgtgaggtaaagtgaaacactatacagtaaacaacataaatttgtaaatgtagatgtacagatcaagcgcaaaaacattcgtagtactaaatacctgttcatgacttgatgcagactgtgaatttgacatgccaacttctgagccggactcatggtgcagtgtgggctgctgtctctccaccaagtgggcctctgtctataaggatgttatttagtagcggagctccccgtggtggtgacacatggctagttccgacgaacatagtaccccagaactggacggcaggggccacatatgattctggggtccaagtacagctgcagtagctatataaaattaaaagaaaaattctaccaatgcaaatgtattcataatatttcattattcccttgttttctggtaatgtatattcaaagtatttgttgtaatttgtgaggctgtgactgcctgcagatatatcaataaatttgaacacggaaggataagttgtcatgagaaatttatcatcccttgtccctttcaattgcaacggtcataaaaaaaacactactgctcttttttctaatccagataattgaacaatcataaaaggccatggcaaaatgctaaagcacagagacatcaggattggttatatttagcagaacagctaccaaagtataatttgagaaagacaggatctacagaatacacttgcttgcatcaacatggtaccagataaatactgtacatagcctagccatactcctgcatttgactaacgctacaaagaacccactggtcaatcccaattgtctgctggattttacaaactcatcaaccgttgaaatccccaacaatgatgtcagacctaaaagttaagaaacaagccaattatcagtacttccaaagaagtactcatcaacaataagaaattgacacatggaaacttaacataagctctaacatgcaaaagtcaagtgtaatagccgaaacactcagtagtttcagaagtgcaaacaagcaacaatgttaatccgatataacagaaagtacaaaaaggagttagccagaaagcacaaaaatactaaaactaatagagttaaattttcttgttgagaagagtttttggacaattatgcccaattaaaaggaaaaacttctcaaatagtaatatagcatcattcctatacgcatcaaacatctgagtgcccaccataaacccatatatactggcatatgtcagtggttggaggcatcaagtacaaatagcatctgtgttatgctgttaccaaatcattttcctgaaatagagaattaccaagacttactattgattggacacatggcatgggagtatgggactagatcagtagattaaaaaaaaagaattttaatgcttgaacccccaactccataattatgcccttcagaaccacgagtactacttaacatgtcaagttatggttcaagtcatgtacaaattgctacataccacaaagtacagtacatttctggcatgtaaaaagtaatcgaaaatagctacatcatacgtaccatagtagccagtatggtctggactgcaattgctctgtcaaacccccatcaggcctacaaggtcatcacttccgttaaaaacttgaaatcagtaataaatgattttggcagaaatgttcaaatttataccatttgtggtctgtggaactcctcttgcttgtgatgtatggtcaggaagttggtttcccacaaaagaaattggttgactacttgaagcaacaacatgatttcctatatcaggataacctgtttgtaaaatatcatctagatgcttcagaagaacacttgattgactttcaatataagacgttgcctcctcagatctggcagcccttgaagctatcaagctaagaaaacggcacatagtactgaagcggacttctgaggctgaacgcatactgctagatccaccagaaggttcttcccctattctgacagaacgagcgtcttttctccatctcctcaaaatgtattgttctgggagttcctttatattcttgagatcaagtacctttagtacatgacagcactgaattccaacagattcaaacttcctacagctgcacgtagctgatccatctagtgcatcaaatttcacaatgctctctgatggcttctcatcaagtgttattttatactccgagattgtgccaagtccaccacatgggaaggacatgcaattcatgtaagcctcaaactcaccctggaacatcttgaaagcttcgggcgtgtatgcacttgaagcttgctttaacattcgcaaggatgggattggcaatgtcacctggcttccatcaacatcagcctgcaatttctttgaccgatgctcctcaagcatggtctcatagcgccttaagaactgcagaatatcttcttgctcactgagctcccgtttaatatcattaatcatattatccttcctaagagtggtgaggatatcagcagaaaacaaggctctccaataaggcaaagcccatttttctttctccagaaaaagtttgttgagccactcattctcacctacatcatgcttctcaattagtttttcccatgctgacaagaattccacctcatcatcacattcaaagagacaatggcttaaagcattggcaaaactctttgagccttcaaatacctgcttcaagtgcctctttgagttatggtagatatgccacacacttgtgcaatggctacttcttggccaaacctctgctgctgccatagcacactcaggacgctcatcaatcaaaacagtgtctggctgcttaccacacattgcatcagcaaacgccttgaatacccatttcaatgattcaatgctctcatcataaagcagagcagcaccaaacacaagcatctgtttgtggttgtccacaccaacaaacaatgcaaatggccttccatacccatttaactcatatgttgtatcaaagcaaacaacatcaccaaagctcctatagtcgatcattgactttgcatcagcccagaagaaatttgcagctgattttccatcaggccccactcctaccgcataatacactgaagggttccctacctgcagctcttccaagtattccagcactgctccagcatccccaagttgcacacctttcccatgctttctgcgatgcagttcccctgccccaagctcatgagctcgagccctcattttgtgcgaccgcagcttgtgcacactatctggattggcaagtggatgattatgctccggaacaaactttgccacccggtacgtccgacatggggtgatcttgattaccattcttgcctggcaccctgtccgcgtcggtggagggcctggtctaggtgtgcctgatggccctgtgctagcattgttgctgacaatggcaatactctcgtgcttggcacggtcactaactccctcgcgggaacaaacaaagatccgggacacgatcaccccacgctttcgcttcttgtacgagcggcggacactgaagcccacatgctcagcgtaccggttgtagaaagcatacgcgtcgtcctccgtctcaaagtgcatatcggtgcgtggcccatccctcgggtccggcaggctcgccacggcagcgatggtgtggtgggacgagctcggcggcagcaatgccagcgacacggcgggcgcggcggaggcgagcgggtggttgtgctcggcggcaaagtcggtgactcggaacgcgttggccgacgggaggagcttgatggtgagcgacgccaggcacccagtgcgcgagtccgggcaccgcggaggcgggggcgacgccgcggcggcctcgtcctgaggcggcttcttgggttcttggcggaatccctgcttggagcagacgaagaggcggcgggtgacggtgtggcgcgagttcttggacttgttggacttgcggacgacgaagccgagcctggcggcgtacgccttgtagaactcgtacgcgtcctcctccgtctcgaagtacatgccaatgcgcggcgaggttgggacggctgcggcggcgtcgccatcgccgcctgcaccggagcccgaggcgacgacttggtcgacgggggcggggtcgtcggagcccccagcggcggcggcggaggaggacggggaggaggaggattcggcgtcgccggaggaggtcggggaggagtcgccggagagggaggaggggtccgcggcggtggacat
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| CDS seq | atgtccaccgccgcggacccctcctccctctccggcgactcctccccgacctcctccggcgacgccgaatcctcctcctccccgtcctcctccgccgccgccgctgggggctccgacgaccccgcccccgtcgaccaagtcgtcgcctcgggctccggtgcaggcggcgatggcgacgccgccgcagccgtcccaacctcgccgcgcattggcatgtacttcgagacggaggaggacgcgtacgagttctacaaggcgtacgccgccaggctcggcttcgtcgtccgcaagtccaacaagtccaagaactcgcgccacaccgtcacccgccgcctcttcgtctgctccaagcagggattccgccaagaacccaagaagccgcctcaggacgaggccgccgcggcgtcgcccccgcctccgcggtgcccggactcgcgcactgggtgcctggcgtcgctcaccatcaagctcctcccgtcggccaacgcgttccgagtcaccgactttgccgccgagcacaaccacccgctcgcctccgccgcgcccgccgtgtcgctggcattgctgccgccgagctcgtcccaccacaccatcgctgccgtggcgagcctgccggacccgagggatgggccacgcaccgatatgcactttgagacggaggacgacgcgtatgctttctacaaccggcctgatgggggtttgacagagcaattgcagtccagaccatactggctactatggtctgacatcattgttggggatttcaacggttga
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| Protein seq | MSTAADPSSLSGDSSPTSSGDAESSSSPSSSAAAAGGSDDPAPVDQVVASGSGAGGDGDAAAAVPTSPRIGMYFETEEDAYEFYKAYAARLGFVVRKSNKSKNSRHTVTRRLFVCSKQGFRQEPKKPPQDEAAAASPPPPRCPDSRTGCLASLTIKLLPSANAFRVTDFAAEHNHPLASAAPAVSLALLPPSSSHHTIAAVASLPDPRDGPRTDMHFETEDDAYAFYNRPDGGLTEQLQSRPYWLLWSDIIVGDFNG |
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| Function | Protein FAR1-RELATED SEQUENCE 5 [UniProtKB/Swiss-Prot:Q9SZL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0015200 | OsLima_07g0015200.01 | Chr07 | 19367850 | 19373359 | - | NAM | ||
| CDS seq | atgtccaccgccgcggacccctcctccctctccggcgactcctccccgacctcctccggcgacgccgaatcctcctcctccccgtcctcctccgccgccgccgctgggggctccgacgaccccgcccccgtcgaccaagtcgtcgcctcgggctccggtgcaggcggcgatggcgacgccgccgcagccgtcccaacctcgccgcgcattggcatgtacttcgagacggaggaggacgcgtacgagttctacaaggcgtacgccgccaggctcggcttcgtcgtccgcaagtccaacaagtccaagaactcgcgccacaccgtcacccgccgcctcttcgtctgctccaagcagggattccgccaagaacccaagaagccgcctcaggacgaggccgccgcggcgtcgcccccgcctccgcggtgcccggactcgcgcactgggtgcctggcgtcgctcaccatcaagctcctcccgtcggccaacgcgttccgagtcaccgactttgccgccgagcacaaccacccgctcgcctccgccgcgcccgccgtgtcgctggcattgctgccgccgagctcgtcccaccacaccatcgctgccgtggcgagcctgccggacccgagggatgggccacgcaccgatatgcactttgagacggaggacgacgcgtatgctttctacaaccggcctgatgggggtttgacagagcaattgcagtccagaccatactggctactatggtctgacatcattgttggggatttcaacggttga
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| Protein seq | MSTAADPSSLSGDSSPTSSGDAESSSSPSSSAAAAGGSDDPAPVDQVVASGSGAGGDGDAAAAVPTSPRIGMYFETEEDAYEFYKAYAARLGFVVRKSNKSKNSRHTVTRRLFVCSKQGFRQEPKKPPQDEAAAASPPPPRCPDSRTGCLASLTIKLLPSANAFRVTDFAAEHNHPLASAAPAVSLALLPPSSSHHTIAAVASLPDPRDGPRTDMHFETEDDAYAFYNRPDGGLTEQLQSRPYWLLWSDIIVGDFNG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.038502 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0496300 | RBH | 1.228136 | 1.677800 | 2.604451 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g31400 | RBH | 1.401670 | 1.033543 | 0.502126 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0496300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0015620 | RBH | 0.779705 | 3.579128 | 3.203560 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0015520 | RBH | 0.132030 | 0.000000 | 1.280560 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0015500 | RBH | 1.347188 | 3.022929 | 5.137872 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0015390 | RBH | 0.072473 | 0.229726 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0015470 | RBH | 1.613826 | 1.673688 | 2.463983 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0415800 | RBH | 5.351067 | 11.8367555 | 13.720597 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0015940 | RBH | 0.198881 | 0.136703 | 0.860090 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0321300 | SBH | 12.27478 | 11.595055 | 35.1957415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0015380 | RBH | 0.604177 | 2.997050 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0015390 | RBH | 1.211173 | 3.235654 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0015630 | RBH | 0.340752 | 0.122739 | 0.354620 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0015420 | RBH | 0.147920 | 0.712940 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G015360 | RBH | 0.233767 | 2.380677 | 1.921892 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0015270 | RBH | 1.239430 | 2.031371 | 1.663395 |
