Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0023200 | OGI:07006270 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:26370404-26374636 | ||||||||
| Gene Symbol | GATA23, OsGATA23, OsGATA23a, OsGATA23b | ||||||||||
| DNA seq | gctacttgtactcccgagatgcggcgccgcctggcaggcgggccccaggatcggtgtccccacacgtcagcgataagtgagggtacaggatacagtacgagatgggaaagggggtacacgtggcaccacacggtgggtcacatgCcccccaacgccgcatcggatccgaccacctcctgggctcctctctccactaccaacctctcgcggagacccaaaccctagctcccaaatcccgaccagccgaagcatttccaacggaattcctctgttcggctcctcctcggggttcaaatcgagcttgaatttgtggttttttttggggagggttttttttttctttttggtgttgtttttggatgcgagtgtggcttggcagggtggtggtggtggtgatgccatgatgcacatgctggtggCccccgatggaggcggcggaggggagatgccgccgccgtacgggggagccgcggcggcgccgccgccgccgatggagcaggagctggagctccaccgcgacaacgccgacgacggcctcgacggccacgtgcggtgagagcttctctgtgtgtgtgtgtggcaagtcacttgtgttcatgagttcatcggcggtgaggaggtgggcgaggtctcgtagcgtctcgcctttgcgtggtattcggggttcatccattctggcgtgctctggtttaagctcagaagattttgtttgtcctgttgcacgagtgaattttagtaaaagaaccttgggctttccatttgtcgtgttgatagttttactgtgtttggccaggtgcttgaggtgtggtatatccggcaacgcgacgccccatatgcgccgcggccctgatggcccaagaactctctgtaatgcgtgcggcattgcgtacagaaaggtatggctgcgctctaattttcgatacagaataccgatgagcctgttgtgtgataccatgttcagctataattcatttccgaggaaattttatagctgtctcttggccattttcctcctgttttggtgcattgatgataatctaaaatactaaatgtgtctatttctgtttatttactcaagtaatagtatgactggttttctaggggaaaatgagacgaatgatagaagctgaaccacctatagatgaagctgcacttgctaagctggttcctgaggtaggcatggaatttgagagtgaggacaaggcctatgaattctacaacaaatatgctggacatgttggttttagtgttcggaaaagtacatcacacaaatcttccggaaatattaccaaagtaaggacttttgtttgctcaagggaaggttacaacagggacaaaaaatcattggaagcaaagaagccaaggctggatacaagaattggttgtccagcgcggttgattattaaagtcacaccagagagtaaatacagagtcactgacttcaaagcggagcacaatcatcagctggcccctccttcgacaatgcatatgttaaggtcacagaggatattgacagaacttcagtctggggaagcagaattgtcagatgattctgtcatgacacctacaacaaaagcaaccggtgatcttgttgtgagacaaattggtttccttcgaagtatctctctcctcccagcagattataagaattatctccgttcaaagcgtatgaaggctatgcaactcggtgatggtggcgcaatattgaaatatttgcagacaatgcaaatggaaaatcctgctttcttttacaccatgcagatcgatgaagacgacaagctaaccaacttcttttgggctgacccaaaatctagagaagacttcaactactttggtgatgtcctctgtctagacacaacttacaaaataaatggatatggcagaccattgtcattattcctcggagtgaatcatcacaaacaaacaattgtttttggtgcagctatgctttatgatgaatcatttgagtcatataggtggctgtttgagagttttaagattgctatgcatggaaaacaaccagcggtagctttagtagatcaatctattccacttgctagtgcaatggcagcagcatggccaaatactactcaaagaacttgtgcttggcatgtatatcagaactctcttaagcaccttaatcatgttttccaaggttcaaaaacatttgcaaaggattttagcagatgtgtatttggctatgaggaagaggaagaattcttgtttgcctggagaagcatgctagaaaagtatgatcttaggcataatgagtggctgtctaaattgtttgatgaaagggaaagatgggctttggcatatgagagacatatattttgtgctgacataataagtgcacttcaagctgaaagcttcagtagtgttctgaaaaagttcttgggCcctcaactggatttactgtccttcttcaagcattatgaaagagccgtagatgagcaccgctatgctgagctccaagctgacttccaagctagtcaaagttatccaagaatacccccagccaagatgttaaagcaagctgcccatacatataccccagtggtgtttgagatctttcgtaaagagtttgagctgttcatggactctgttctgttcagttgtggggaagctgggacaacctctgagtacaaagtcgctccctctgaaaaacccaaggaacattttgttagatttgactcgagtgactgctcctgtatctgcacttgtaggaagtttgagtttatgggtattccatgttgccatatgttgaaggtgctcgattacagaaatatcaaagaattacctcagagatatctgttgaagcgatggagaaggactgccaagtctgcaaatgaagaaaaccaagggtatgtggcaaatggaaatggttcatcattaaattccattgtacctcctgcaaaccatcatggtctccaaggcttcagtgcaatgattcaagtaaccaatctgcaagattcattctccttgttttccccctgtatgtgctgtggctgataaagttttctatcttgattaactgcaggacactcctgtttctaatatgcatgagaattcatttcgcagaagctcatgatgcaggtatcatacatgattatgaattattaatatgccaatttgatctcttgttttgtttggactattactgagcctatctggttctatccattgcaccaaaacctagggcattgatttacaaccaaagtttcccccttctgagagatgcatgacaaattttttagggagatttagatagaatattttgtttgttgaatattgctcacttggttctggattttcctccttcgaggtacaattattaaagcagtttggcgatgacacgtggacaaacttagctctgttggatcaaacagattatttatgtgatcaatttatcatgcaggtgacttgaatctaaacattattccttctgcgcggtgcccgctccacgatactggcgttgaagcagtgagaacaggccatgcggagctcccccgaataaaagtttccaacttgtaaattatgcagctgtaggaaatcccagctattgaggcgcccatcctacttaggctcttagactagattctggtatgaaatcatatgattgtgctgcccacctacacccagggaaattttgtgcattctgtaaacagtctatttatcctagcccattcataaaagaaaaaaaaaggtgatcagatgccaatgcagagagattgctcctttgaaactttgcagggcaagcagacccatcatgatcatcaatcctaggagggtttcagttagattcagatcttggggtggtttcatttcgtttcatttcacctgcaggtgaggtgagctggacagctcatgcaataaaacgttggaagcaagacaagcccagcttggcaatgtggatctcaagcccggagagctaccggccgagctaggagctgcctttgacgctacagtggacaactgtgctttcaagcctggctttgggcgcatttgtcccatatgcacagttgcataatgcgtgcaaatgttgttcattgtcctcaatgcatcgtatatcttgggagcttcgataatgctgctaccaatgtgtccttgaaaaacacattcgaggtgctttcgtgctcgctctcttttttccaactctgtcaggtttcttttcaaacaaagttatttcagacatttttctataaaatgtctttgaaatatatacttccattc
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| CDS seq | atgatgcacatgctggtggCccccgatggaggcggcggaggggagatgccgccgccgtacgggggagccgcggcggcgccgccgccgccgatggagcaggagctggagctccaccgcgacaacgccgacgacggcctcgacggccacgtgcggacactcctgtttctaatatgcatgagaattcatttcgcagaagctcatgatgcaggtgacttgaatctaaacattattccttctgcgcggtgcccgctccacgatactggcgttgaagcagtgagaacaggccatgcggagctcccccgaataaaagtttccaacttgtaa |
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| Protein seq | MMHMLVAPDGGGGGEMPPPYGGAAAAPPPPMEQELELHRDNADDGLDGHVRTLLFLICMRIHFAEAHDAGDLNLNIIPSARCPLHDTGVEAVRTGHAELPRIKVSNL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0023200 | OsPr106_07g0023200.01 | Chr07 | 26370404 | 26374109 | + | NAM | ||
| CDS seq | atgatgcacatgctggtggCccccgatggaggcggcggaggggagatgccgccgccgtacgggggagccgcggcggcgccgccgccgccgatggagcaggagctggagctccaccgcgacaacgccgacgacggcctcgacggccacgtgcggacactcctgtttctaatatgcatgagaattcatttcgcagaagctcatgatgcaggtgacttgaatctaaacattattccttctgcgcggtgcccgctccacgatactggcgttgaagcagtgagaacaggccatgcggagctcccccgaataaaagtttccaacttgtaa
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| Protein seq | MMHMLVAPDGGGGGEMPPPYGGAAAAPPPPMEQELELHRDNADDGLDGHVRTLLFLICMRIHFAEAHDAGDLNLNIIPSARCPLHDTGVEAVRTGHAELPRIKVSNL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0023200 | OsPr106_07g0023200.02 | Chr07 | 26372580 | 26374636 | + | IsoSeq | ||
| CDS seq | atgaaatcatatgattgtgctgcccacctacacccagggaaattttgtgcattctgtaaacagtctatttatcctagcccattcataaaagaaaaaaaa |
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| Protein seq | MKSYDCAAHLHPGKFCAFCKQSIYPSPFIKEKK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| AF | Chr07 | 26370404 | 26373444 | + | OsPr106_07g0023200.01 | OsPr106_07g0023200.01,OsPr106_07g0023200.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.878921 | 4.672679 | 13.048926 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0615900 | RBH | 1.649248 | 1.127824 | 3.235230 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g42400 | RBH | 1.013731 | 0.607844 | 0.801948 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0615900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0023270 | RBH | 0.687363 | 11.218546 | 3.448845 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0023330 | RBH | 0.383178 | 0.632424 | 2.991814 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0023690 | RBH | 0.382531 | 0.882464 | 1.451395 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0023020 | RBH | 5.144393 | 17.033373 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0023230 | RBH | 0.553296 | 0.336587 | 0.421778 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G022950 | RBH | 0.663954 | 5.745052 | 4.569552 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
