Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNip_07g0539400 OGI:07058810 | 16/16 Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) Chr07:21244761-21247848
Gene Symbol GNS12, Gns12, OsGns12
DNA seq

GATCCTCTCTAAAAATAAATAAATAAATACTTCTTCATGTTTTCAGTTCTGCTTAGGAGTCTGATCATATGCACATACATGATAAATTGCTCAGGGTATGTAACTGAGGAATTTCATCCAACAGGAATGAACGGTATATTTACTTATTTCAATAGACCCGACTGGAAAAACTGCTACAAACATATCATTTTATTTTTGCCAAACGATGTGGACTTGTTCTTCGATATCCATCCCCACTATCGCGAACTGATGGTAGCTAGCTTAGCCCTCGGTCTTCAGTACGCTTTGTCCAGTTCAAGCATTGGCGGAAGGACGCAGTTTCCAATCTCTGAAAATAATTCAACAAACACCTAAGATCACCATTTAACTAGTTGAATCATCACGTAGTGTACAAAAACAAGTGTGTATTTTTTTTACGCAAAATGTACATTATTAGCACTTGAAGGTTTCGAACGCATTGTTAATGGCATTTAGTTTCAAAACAAAACATACAATGGAGATTAAAATGGCACGTGGTTGTAAGCCACGAAAGAAGATGGATCAATTAATTAGCTATGTTTGCTTCGAAAAATTATATATGGGAGAAGAAATGCATGGGCAATAATTTTTGAAAGCAATATCTGAAACAAACAAGATGAGAATATCTGTTGAGCTTGAACTCACCTGGTGCCTGGTAGGTAATGGAACCAGCACCACCGAAGTCACACGAGCCACTGACTCGGCCAACACGCTGGTAATAGTCGTTGAATGCGTAGGATGCGTGCGCCACCTTAGTGTTAGGCTCGAAACACCGTGCACCGGGCTGGATGGCGCTGCAGTCTGCACAGCTGCCGCATGCATAATCTAGGGCTGCCTGTAGCCGCATGTCCCCAACTGCAGGGTTCGCGATACACCAACTTGGATTTGGGTCGCAAATGCCTGCAATTTAGTAGATAAACAGTGAGGCAGATTTATCAAATGGTTGTGAGAACTAAACAAAATTGCATTTTAAGAAATATGTGGTCGTAGGAACTAACTTTCTGATGGTTGGAAGACAATATAAGCAGCGCCAGCAAAGTCGCATGTCCCATTGGCTTGGCCCATCCGCTGGTAGTAGTCATTGAATGCGAAAGACGCATGCGCAACCATTGTGTTTGGCTCGAAGCAAGGTTTGCCCTGTTGGATAGCGCTGCAGTCTGCGCCGTTACTACAAGCCCAATCCAACGCCGCCTGCAGCCGGGAATTCCCCACAGCTAAATTTGCCACGCACCAGCTCGCCTTGGTGGGACAAATACCACCACCATGAAAATCAACCTCGTAAACCTTTGTACCGTTAGGGTAGAACAGGCCGAAGTTGCGTTCTACAGATGCTCCAGCCTTCTTGTTCTCGTTGAAAAGAGCGAAGATGTACACAGAGACATCAGGCATACCAGAGGCTCCAAACAGAGCGCGTCTGATAATACCATTGTTGAATGCTTGGGCGTTAGCTTTTGTAGCCACATCCACTTCGGCATCAGCTTGTGTGGTCAACTTGCGGAACTGACCACCGGAGGGATGCCCACATTCCGAACATTTGACGGGCACCCTTGGTGTCGGGTGCCCCCATCTTGTTTGGGCCATTGAGGCCCTCACACTATCACCAGAAACCTGATTTATAGCGTAGTAAACAGCATCGAGCTGGGCATCAAAGAGACTATAGTATGTGATGTGGCTCCACGGATCGACTACACCGGCGTTGGGGCCAAATGTAGCGTAATCGCGGGAGATCTGGCCTTTAGAGTTAGCCCAGGCAATATATGGGTAGAAATTGACCATGAGATATGAGTTGGTCTGTTGCAAGAAATCGATCATGGGACTCATTACCGACTGGGCGATGCTGTCTTGAAACACACCCTTGGATGATGGCCATGACACATTGACCGCATCAAAATTAATGGGTGTTGATACCTTTATGATGTCGGCAAGGCCCAGTCTCGCTAGCGCCGTCTGCACATTCTTCATCGCCGGTAACAGCTGAGGGGTCAAGTTGGGTGCTTGCCTGAACACCTCATTCCCCACAGCCACACCATTGATTTGTGTGCCCTGGTTATAGTACGGAACAATGTTTGTTTTCACCCAGTCTAGCGCACTTCCCTGATCGTGGCCTGCAGAAGCAAGGTCCTTGTTGGGTAGTGCCACCATCACCTTGATGCCTGTGTTGGACAGCGATCTCAGCACCGTCGGGTCGGCGTCGTAGATCCTCACCTTCGTGATGCCGTTCTCCTTCAGAAGATTCACCACGGCCGGTGGATCCATCAAATCGTCCGCGTCCCTCCCGTAGCACACGCCCACCTCGCCAGCCTCTGCAGTCAGTGGTGGAGTCAGAAAGATAGATTTTTGAGCCCAGGCAAACTTCAATATAAGTGCCCCTTTGAATCACAGAAATGAAAAAACGGAGGAATAAGAAAAACATAGGATTCTGACAGGAATGAAAGTGTAAAACAGAGGATTGCAAAACACAGGAAAAACGGAATGACTGTTTGATTGGACCACAGGAAAAACACAGGAATTTAAGGAGAGATAAAGACTCAAAGGATTTCTTCCATGAGGTTCTATCTCTTATTAAAATTCCTCCAAAACTTGTATGGGAAGAGGTATTTAATAGGAATTTCATAGGATTTCATAGGGTTCATTTCTTTGATTCAAAAGGCTTTGTAGGAAAAATTCCTATAAGAATAAAATCCTCTAAAATTCCTATGAATTTTCTTTCAATTAAAGAGGGCCTAACTAGTATTTGTTATTTTCTCATTGATTTATCCATCAATATTAAAATTTAATGGAGTTTTCGCCGGCGAGCCGGACTGCCCGGGCTAGCCGAGCGGTCGCTCTGCCACTGACAGTGCAGTGGAAAGCTAAGAAACACCGGTTCTGTTGGTACAAAGCTGCACATACTTAAGCATATCTAAATAATACTACTAGTCCAAAATAATCGAAAGCGTTTCTACGTTTGCCATGGTTACCTGTACGGGAGATGGAGAGCAGCAGCAATGCGGTGGCAAGGAGGAGGGAGCAGAGGAGGTGAGTGAGTGCCATATGTGCTCTGATAGTTTGATCAAGACGAATTTGATGG

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CDS seq

ATCAAATTCGTCTTGATCAAACTATCAGAGCACATATGGCACTCACTCGCTGGCGAGGTGGGCGTGTGCTACGGGAGGGACGCGGACGATTTGATGGATCCACCGGCCGTGGTGAATCTTCTGAAGGAGAACGGCATCACGAAGGTGAGGATCTACGACGCCGACCCGACGGTGCTGAGATCGCTGTCCAACACAGGCATCAAGGTGATGGTGGCACTACCCAACAAGGACCTTGCTTCTGCAGGCCACGATCAGGGAAGTGCGCTAGACTGGGTGAAAACAAACATTGTTCCGTACTATAACCAGGGCACACAAATCAATGGTGTGGCTGTGGGGAATGAGGTGTTCAGGCAAGCACCCAACTTGACCCCTCAGCTGTTACCGGCGATGAAGAATGTGCAGACGGCGCTAGCGAGACTGGGCCTTGCCGACATCATAAAGGTATCAACACCCATTAATTTTGATGCGGTCAATGTGTCATGGCCATCATCCAAGGGTGTGTTTCAAGACAGCATCGCCCAGTCGGTAATGAGTCCCATGATCGATTTCTTGCAACAGACCAACTCATATCTCATGGTCAATTTCTACCCATATATTGCCTGGGCTAACTCTAAAGGCCAGATCTCCCGCGATTACGCTACATTTGGCCCCAACGCCGGTGTAGTCGATCCGTGGAGCCACATCACATACTATAGTCTCTTTGATGCCCAGCTCGATGCTGTTTACTACGCTATAAATCAGGTTTCTGGTGATAGTGTGAGGGCCTCAATGGCCCAAACAAGATGGGGGCACCCGACACCAAGGGTGCCCGTCAAATGTTCGGAATGTGGGCATCCCTCCGGTGGTCAGTTCCGCAAGTTGACCACACAAGCTGATGCCGAAGTGGATGTGGCTACAAAAGCTAACGCCCAAGCATTCAACAATGGTATTATCAGACGCGCTCTGTTTGGAGCCTCTGGTATGCCTGATGTCTCTGTGTACATCTTCGCTCTTTTCAACGAGAACAAGAAGGCTGGAGCATCTGTAGAACGCAACTTCGGCCTGTTCTACCCTAACGGTACAAAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGGGAATTCCCGGCTGCAGGCGGCGTTGGATTGGGCTTGTAGTAACGGCGCAGACTGCAGCGCTATCCAACAGGGCAAACCTTGCTTCGAGCCAAACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACATGCGACTTTGCTGGCGCTGCTTATATTGTCTTCCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTGCAGTTGGGGACATGCGGCTACAGGCAGCCCTAGATTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGTGCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGTCAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTACCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAATGCTTGAACTGGACAAAGCG

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Protein seq

IKFVLIKLSEHIWHSLAGEVGVCYGRDADDLMDPPAVVNLLKENGITKVRIYDADPTVLRSLSNTGIKVMVALPNKDLASAGHDQGSALDWVKTNIVPYYNQGTQINGVAVGNEVFRQAPNLTPQLLPAMKNVQTALARLGLADIIKVSTPINFDAVNVSWPSSKGVFQDSIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSKGQISRDYATFGPNAGVVDPWSHITYYSLFDAQLDAVYYAINQVSGDSVRASMAQTRWGHPTPRVPVKCSECGHPSGGQFRKLTTQADAEVDVATKANAQAFNNGIIRRALFGASGMPDVSVYIFALFNENKKAGASVERNFGLFYPNGTKVYEVDFHGGGICPTKASWCVANLAVGNSRLQAALDWACSNGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICDPNPSWCIANPAVGDMRLQAALDYACGSCADCSAIQPGARCFEPNTKVAHASYAFNDYYQRVGRVSGSCDFGGAGSITYQAPEIGNCVLPPMLELDKA

Function Glucan endo-1,3-beta-glucosidase 13 [UniProtKB/Swiss-Prot:Q9FJU9]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNip_07g0539400 OsNip_07t0539400-00 Chr07 21245036 21247034 - RAP2018-11-26
CDS seq

ATGGATCCACCGGCCGTGGTGAATCTTCTGAAGGAGAACGGCATCACGAAGGTGAGGATCTACGACGCCGACCCGACGGTGCTGAGATCGCTGTCCAACACAGGCATCAAGGTGATGGTGGCACTACCCAACAAGGACCTTGCTTCTGCAGGCCACGATCAGGGAAGTGCGCTAGACTGGGTGAAAACAAACATTGTTCCGTACTATAACCAGGGCACACAAATCAATGGTGTGGCTGTGGGGAATGAGGTGTTCAGGCAAGCACCCAACTTGACCCCTCAGCTGTTACCGGCGATGAAGAATGTGCAGACGGCGCTAGCGAGACTGGGCCTTGCCGACATCATAAAGGTATCAACACCCATTAATTTTGATGCGGTCAATGTGTCATGGCCATCATCCAAGGGTGTGTTTCAAGACAGCATCGCCCAGTCGGTAATGAGTCCCATGATCGATTTCTTGCAACAGACCAACTCATATCTCATGGTCAATTTCTACCCATATATTGCCTGGGCTAACTCTAAAGGCCAGATCTCCCGCGATTACGCTACATTTGGCCCCAACGCCGGTGTAGTCGATCCGTGGAGCCACATCACATACTATAGTCTCTTTGATGCCCAGCTCGATGCTGTTTACTACGCTATAAATCAGGTTTCTGGTGATAGTGTGAGGGCCTCAATGGCCCAAACAAGATGGGGGCACCCGACACCAAGGGTGCCCGTCAAATGTTCGGAATGTGGGCATCCCTCCGGTGGTCAGTTCCGCAAGTTGACCACACAAGCTGATGCCGAAGTGGATGTGGCTACAAAAGCTAACGCCCAAGCATTCAACAATGGTATTATCAGACGCGCTCTGTTTGGAGCCTCTGGTATGCCTGATGTCTCTGTGTACATCTTCGCTCTTTTCAACGAGAACAAGAAGGCTGGAGCATCTGTAGAACGCAACTTCGGCCTGTTCTACCCTAACGGTACAAAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGGGAATTCCCGGCTGCAGGCGGCGTTGGATTGGGCTTGTAGTAACGGCGCAGACTGCAGCGCTATCCAACAGGGCAAACCTTGCTTCGAGCCAAACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACATGCGACTTTGCTGGCGCTGCTTATATTGTCTTCCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTGCAGTTGGGGACATGCGGCTACAGGCAGCCCTAGATTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGTGCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGTCAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTACCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAATGCTTGAACTGGACAAAGCGTACTGA

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Protein seq

MDPPAVVNLLKENGITKVRIYDADPTVLRSLSNTGIKVMVALPNKDLASAGHDQGSALDWVKTNIVPYYNQGTQINGVAVGNEVFRQAPNLTPQLLPAMKNVQTALARLGLADIIKVSTPINFDAVNVSWPSSKGVFQDSIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSKGQISRDYATFGPNAGVVDPWSHITYYSLFDAQLDAVYYAINQVSGDSVRASMAQTRWGHPTPRVPVKCSECGHPSGGQFRKLTTQADAEVDVATKANAQAFNNGIIRRALFGASGMPDVSVYIFALFNENKKAGASVERNFGLFYPNGTKVYEVDFHGGGICPTKASWCVANLAVGNSRLQAALDWACSNGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICDPNPSWCIANPAVGDMRLQAALDYACGSCADCSAIQPGARCFEPNTKVAHASYAFNDYYQRVGRVSGSCDFGGAGSITYQAPEIGNCVLPPMLELDKAY

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Gene Transcript Chromosome Start End Strand Source
OsNip_07g0539400 OsNip_07t0539400-01 Chr07 21244761 21247848 - IsoSeq
CDS seq

ATCAAATTCGTCTTGATCAAACTATCAGAGCACATATGGCACTCACTCGCTGGCGAGGTGGGCGTGTGCTACGGGAGGGACGCGGACGATTTGATGGATCCACCGGCCGTGGTGAATCTTCTGAAGGAGAACGGCATCACGAAGGTGAGGATCTACGACGCCGACCCGACGGTGCTGAGATCGCTGTCCAACACAGGCATCAAGGTGATGGTGGCACTACCCAACAAGGACCTTGCTTCTGCAGGCCACGATCAGGGAAGTGCGCTAGACTGGGTGAAAACAAACATTGTTCCGTACTATAACCAGGGCACACAAATCAATGGTGTGGCTGTGGGGAATGAGGTGTTCAGGCAAGCACCCAACTTGACCCCTCAGCTGTTACCGGCGATGAAGAATGTGCAGACGGCGCTAGCGAGACTGGGCCTTGCCGACATCATAAAGGTATCAACACCCATTAATTTTGATGCGGTCAATGTGTCATGGCCATCATCCAAGGGTGTGTTTCAAGACAGCATCGCCCAGTCGGTAATGAGTCCCATGATCGATTTCTTGCAACAGACCAACTCATATCTCATGGTCAATTTCTACCCATATATTGCCTGGGCTAACTCTAAAGGCCAGATCTCCCGCGATTACGCTACATTTGGCCCCAACGCCGGTGTAGTCGATCCGTGGAGCCACATCACATACTATAGTCTCTTTGATGCCCAGCTCGATGCTGTTTACTACGCTATAAATCAGGTTTCTGGTGATAGTGTGAGGGCCTCAATGGCCCAAACAAGATGGGGGCACCCGACACCAAGGGTGCCCGTCAAATGTTCGGAATGTGGGCATCCCTCCGGTGGTCAGTTCCGCAAGTTGACCACACAAGCTGATGCCGAAGTGGATGTGGCTACAAAAGCTAACGCCCAAGCATTCAACAATGGTATTATCAGACGCGCTCTGTTTGGAGCCTCTGGTATGCCTGATGTCTCTGTGTACATCTTCGCTCTTTTCAACGAGAACAAGAAGGCTGGAGCATCTGTAGAACGCAACTTCGGCCTGTTCTACCCTAACGGTACAAAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGGGAATTCCCGGCTGCAGGCGGCGTTGGATTGGGCTTGTAGTAACGGCGCAGACTGCAGCGCTATCCAACAGGGCAAACCTTGCTTCGAGCCAAACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACATGCGACTTTGCTGGCGCTGCTTATATTGTCTTCCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTGCAGTTGGGGACATGCGGCTACAGGCAGCCCTAGATTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGTGCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGTCAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTACCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAATGCTTGAACTGGACAAAGCG

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Protein seq

IKFVLIKLSEHIWHSLAGEVGVCYGRDADDLMDPPAVVNLLKENGITKVRIYDADPTVLRSLSNTGIKVMVALPNKDLASAGHDQGSALDWVKTNIVPYYNQGTQINGVAVGNEVFRQAPNLTPQLLPAMKNVQTALARLGLADIIKVSTPINFDAVNVSWPSSKGVFQDSIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSKGQISRDYATFGPNAGVVDPWSHITYYSLFDAQLDAVYYAINQVSGDSVRASMAQTRWGHPTPRVPVKCSECGHPSGGQFRKLTTQADAEVDVATKANAQAFNNGIIRRALFGASGMPDVSVYIFALFNENKKAGASVERNFGLFYPNGTKVYEVDFHGGGICPTKASWCVANLAVGNSRLQAALDWACSNGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICDPNPSWCIANPAVGDMRLQAALDYACGSCADCSAIQPGARCFEPNTKVAHASYAFNDYYQRVGRVSGSCDFGGAGSITYQAPEIGNCVLPPMLELDKA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source

Expression

Leaf Root Panicle
FPKM 0.000000 0.000000 0.000000

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0538000 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g35520 RBH 0.0 0.0 0.0
Nipponbare | IRGSP 1.0 | RAP-db Os07g0539400 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0018100 SBH 0.000000 487.809998 1.160585
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0018040 SBH 0.555259 3.514833 0.185651
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0018020 RBH 1.783775 25.033304 1.999873
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0017910 SBH 0.255038 0.294452 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0018060 SBH 0.0 50.745064 0.522968
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0346200 RBH 0.301506 0.2162215 0
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0018560 SBH 0.0 3.383519 0.0
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0359400 RBH 4.826267 4.8051665 0.0461295
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0017820 SBH 0.080081 0.000000 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0017930 SBH 0.287123 6.647925 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0017820 SBH 0.0 126.710030 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0018110 SBH 0.0 14.956555 0.0
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0017880 RBH 0.0 85.263474 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G017840 SBH 0.058014 11.307003 0.619336
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0017830 RBH 2.090966 33.446281 0.0
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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