Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsPr106_07g0018060 | OGI:07058810 | 16/16 | PR 106 | Os127742RS1 | Gramene(+IsoSeq) | Chr07:22311770-22314035 | ||||||||
| Gene Symbol | GNS12, Gns12, OsGns12, PR2 | ||||||||||
| DNA seq | ttcaacacgagtgaacgatacattaattacttacttaaacttccaaaccggaatacagacattgtcgtcgttatttttatttgaccataagactaattcctttcttagggaatatatatggacttattcttcaatcccatcctcttactgccaagtcttctgtacattcaagagttgtttggtgggagtacgcaatttccaatctctgcaaaaatatgaataaacaagcacatgtgagaaccatttactactcatgaaatgaaagcattcaattattgttcaggcaagaatttgatttattagtggtatgagttatattaattgaacgcattctagaatgagcgtgaactcacttggttgtcgtgtgacaatggtagcggcgccgttaaagtcacacgacccactggcacgaccggcagtctgataataatcgttgaatgcataggatgcatgcgctaccttggtgtcagggtcaaagcattgcgcaccacgctggatagcgttgcagtctgcgcagctaccgcacgcatagtctagcgcattctgcaaacgtgtgtccccaacctccggtttcgcaatgcaccaacttgggtttgggtcgcagatgcctttatacattttggttaataaatagcaaataagaaatggatgcataaatgtagaaacagtatcctgaaaacttaataaggatggagaggaaactaacttggtgaaggcttgtagacaatagaagcagcaccagagaagtcacatgtaccgctagcttggctcttacgctggtagtagtcattaaacgcgtaagatgcgtgtgagaccaaggtgtttggcgcaaagcatgccttgcctggttggatagcactgcaatctgcaccattactgcaagcccaatctaatgccgcttgcagccgggtactcccaactgctgaatttgccacgcaccagctcgcttttgtgggacaaacattaccaccatcaccattgtgaaagtcaacttggtaaacctgtgtaccgtctgggtagaacaagccgaagttttgttctacagatgctccgcgcttcaaattctcgttgaaaagagcaaagatgtatacggagacatcgggcataccggaggctccgaacagtgcacgacggataagaccattgttgaatgcttgggcgttggcttttgtagccacgtccacctgaacatcatctagtgtggccaatgagtggaatccgccactggagggatgcccacattctccacatttcacgtccaccttttgaggcggtcgcccctgtattgcttggcccattgagactctcacactaccacctgaaacatggtttatagcggagtaaacagcatctagctgagcatcaaagaggttatggtatgtgataccgctcgcctgatctaccacaggtgaggcgttggggccaaatagagcgtaatcgcgagagatttggccattagaattagcccatgcaatatatgggtagaaattaaccatgagataggagttggtttgttgcaggaagtcgatcatgggactcatcaccgattgggagatgttatcttggaacacgcctgcggatggcgggaatgacaccttaaccgaattgaaactaatgggtgttgatacctttatggcgtcggcaaggtccagcctcgccaacgccgcctgcacgttcctcatggccggtaccagctgtgaggtcaggccaggcgcttgcacgaacacctcgttccccacggccacaccgttaatctgtgaggaactgtagtacggcaccacgttcttgttcacccaactgaacgcactattaaaatccttggcggcaccagatgccagatctgtattgttcatcgccaccatcaccttgatgttttggttggccagcgcgtctagcacggtcgggtcagcgtcgtagatcctcaccatggtgatgccgtgtgccttgagaaggctaaccgtggacgatggatccatcagattgtccccgtccctcccccagcacacgcccgcttcgccagcatctgcagtgcaagaaaaacaaaatactgccgttgatacagagctgcaactgcacgcgcgggttagtattcaccaaagcaaagaggcttttattcgtttcctgcacctgcacgggagaggaagagcagcggcaatgcggcggcaaggaggaggtgaacgagagcgagcgccatatggcctcttgtcctgcgagccttggcgatcgagtggcgcagcaaagcagggtaaaatatgacgaggaccgt
More
|
||||||||||
| CDS seq | atggcgctcgctctcgttcacctcctccttgccgccgcattgccgctgctcttcctctcccgtgcagatgctggcgaagcgggcgtgtgctgggggagggacggggacaatctgatggatccatcgtccacggttagccttctcaaggcacacggcatcaccatggtgaggatctacgacgctgacccgaccgtgctagacgcgctggccaaccaaaacatcaaggtgatggtggcgatgaacaatacagatctggcatctggtgccgccaaggattttaatagtgcgttcagttgggtgaacaagaacgtggtgccgtactacagttcctcacagattaacggtgtggccgtggggaacgaggtgttcgtgcaagcgcctggcctgacctcacagctggtaccggccatgaggaacgtgcaggcggcgttggcgaggctggaccttgccgacgccataaaggtatcaacacccattagtttcaattcggttaaggtgtcattcccgccatccgcaggcgtgttccaagataacatctcccaatcggtgatgagtcccatgatcgacttcctgcaacaaaccaactcctatctcatggttaatttctacccatatattgcatgggctaattctaatggccaaatctctcgcgattacgctctatttggccccaacgcctcacctgtggtagatcaggcgagcggtatcacataccataacctctttgatgctcagctagatgctgtttactccgctataaaccatgtttcaggtggtagtgtgagagtctcaatgggccaagcaatacaggggcgaccgcctcaaaaggtggacgtgaaatgtggagaatgtgggcatccctccagtggcggattccactcattggccacactagatgatgttcaggtggacgtggctacaaaagccaacgcccaagcattcaacaatggtcttatccgtcgtgcactgttcggagcctccggtatgcccgatgtctccgtatacatctttgctcttttcaacgagaatttgaagcgcggagcatctgtagaacaaaacttcggcttgttctacccagacggtacacaggtttaccaagttgactttcacaatggtgatggtggtaatgtttgtcccacaaaagcgagctggtgcgtggcaaattcagcagttgggagtacccggctgcaagcggcattagattgggcttgcagtaatggtgcagattgcagtgctatccaaccaggcaaggcatgctttgcgccaaacaccttggtctcacacgcatcttacgcgtttaatgactactaccagcgtaagagccaagctagcggtacatgtgacttctctggtgctgcttctattgtctacaagccttcaccaagcatctgcgacccaaacccaagttggtgcattgcgaaaccggaggttggggacacacgtttgcagaatgcgctagactatgcgtgcggtagctgcgcagactgcaacgctatccagcgtggtgcgcaatgctttgaccctgacaccaaggtagcgcatgcatcctatgcattcaacgattattatcagactgccggtcgtgccagtgggtcgtgtgactttaacggcgccgctaccattgtcacacgacaaccaaagattggaaattgcgtactcccaccaaacaactcttga
More
|
||||||||||
| Protein seq | MALALVHLLLAAALPLLFLSRADAGEAGVCWGRDGDNLMDPSSTVSLLKAHGITMVRIYDADPTVLDALANQNIKVMVAMNNTDLASGAAKDFNSAFSWVNKNVVPYYSSSQINGVAVGNEVFVQAPGLTSQLVPAMRNVQAALARLDLADAIKVSTPISFNSVKVSFPPSAGVFQDNISQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSNGQISRDYALFGPNASPVVDQASGITYHNLFDAQLDAVYSAINHVSGGSVRVSMGQAIQGRPPQKVDVKCGECGHPSSGGFHSLATLDDVQVDVATKANAQAFNNGLIRRALFGASGMPDVSVYIFALFNENLKRGASVEQNFGLFYPDGTQVYQVDFHNGDGGNVCPTKASWCVANSAVGSTRLQAALDWACSNGADCSAIQPGKACFAPNTLVSHASYAFNDYYQRKSQASGTCDFSGAASIVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACGSCADCNAIQRGAQCFDPDTKVAHASYAFNDYYQTAGRASGSCDFNGAATIVTRQPKIGNCVLPPNNS |
||||||||||
| Function | Glucan endo-1,3-beta-glucosidase 13 [UniProtKB/Swiss-Prot:Q9FJU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsPr106_07g0018060 | OsPr106_07g0018060.01 | Chr07 | 22311770 | 22314035 | - | NAM | ||
| CDS seq | atggcgctcgctctcgttcacctcctccttgccgccgcattgccgctgctcttcctctcccgtgcagatgctggcgaagcgggcgtgtgctgggggagggacggggacaatctgatggatccatcgtccacggttagccttctcaaggcacacggcatcaccatggtgaggatctacgacgctgacccgaccgtgctagacgcgctggccaaccaaaacatcaaggtgatggtggcgatgaacaatacagatctggcatctggtgccgccaaggattttaatagtgcgttcagttgggtgaacaagaacgtggtgccgtactacagttcctcacagattaacggtgtggccgtggggaacgaggtgttcgtgcaagcgcctggcctgacctcacagctggtaccggccatgaggaacgtgcaggcggcgttggcgaggctggaccttgccgacgccataaaggtatcaacacccattagtttcaattcggttaaggtgtcattcccgccatccgcaggcgtgttccaagataacatctcccaatcggtgatgagtcccatgatcgacttcctgcaacaaaccaactcctatctcatggttaatttctacccatatattgcatgggctaattctaatggccaaatctctcgcgattacgctctatttggccccaacgcctcacctgtggtagatcaggcgagcggtatcacataccataacctctttgatgctcagctagatgctgtttactccgctataaaccatgtttcaggtggtagtgtgagagtctcaatgggccaagcaatacaggggcgaccgcctcaaaaggtggacgtgaaatgtggagaatgtgggcatccctccagtggcggattccactcattggccacactagatgatgttcaggtggacgtggctacaaaagccaacgcccaagcattcaacaatggtcttatccgtcgtgcactgttcggagcctccggtatgcccgatgtctccgtatacatctttgctcttttcaacgagaatttgaagcgcggagcatctgtagaacaaaacttcggcttgttctacccagacggtacacaggtttaccaagttgactttcacaatggtgatggtggtaatgtttgtcccacaaaagcgagctggtgcgtggcaaattcagcagttgggagtacccggctgcaagcggcattagattgggcttgcagtaatggtgcagattgcagtgctatccaaccaggcaaggcatgctttgcgccaaacaccttggtctcacacgcatcttacgcgtttaatgactactaccagcgtaagagccaagctagcggtacatgtgacttctctggtgctgcttctattgtctacaagccttcaccaagcatctgcgacccaaacccaagttggtgcattgcgaaaccggaggttggggacacacgtttgcagaatgcgctagactatgcgtgcggtagctgcgcagactgcaacgctatccagcgtggtgcgcaatgctttgaccctgacaccaaggtagcgcatgcatcctatgcattcaacgattattatcagactgccggtcgtgccagtgggtcgtgtgactttaacggcgccgctaccattgtcacacgacaaccaaagattggaaattgcgtactcccaccaaacaactcttga
More
|
|||||||
| Protein seq | MALALVHLLLAAALPLLFLSRADAGEAGVCWGRDGDNLMDPSSTVSLLKAHGITMVRIYDADPTVLDALANQNIKVMVAMNNTDLASGAAKDFNSAFSWVNKNVVPYYSSSQINGVAVGNEVFVQAPGLTSQLVPAMRNVQAALARLDLADAIKVSTPISFNSVKVSFPPSAGVFQDNISQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSNGQISRDYALFGPNASPVVDQASGITYHNLFDAQLDAVYSAINHVSGGSVRVSMGQAIQGRPPQKVDVKCGECGHPSSGGFHSLATLDDVQVDVATKANAQAFNNGLIRRALFGASGMPDVSVYIFALFNENLKRGASVEQNFGLFYPDGTQVYQVDFHNGDGGNVCPTKASWCVANSAVGSTRLQAALDWACSNGADCSAIQPGKACFAPNTLVSHASYAFNDYYQRKSQASGTCDFSGAASIVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACGSCADCNAIQRGAQCFDPDTKVAHASYAFNDYYQTAGRASGSCDFNGAATIVTRQPKIGNCVLPPNNS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 50.745064 | 0.522968 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0539900 | RBH | 1.214078 | 1.350424 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35560 | RBH | 0.812356 | 0.845513 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0539900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018130 | RBH | 0.0 | 10.813023 | 0.457711 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018040 | SBH | 0.555259 | 3.514833 | 0.185651 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018020 | SBH | 1.783775 | 25.033304 | 1.999873 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017910 | SBH | 0.255038 | 0.294452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0017910 | SBH | 0.0 | 1.678708 | 1.099422 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0348700 | RBH | 0.50109 | 344.448608 | 0.0378195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018560 | RBH | 0.0 | 3.383519 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0359400 | SBH | 4.826267 | 4.8051665 | 0.0461295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017820 | RBH | 0.080081 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017930 | SBH | 0.287123 | 6.647925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017850 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018140 | RBH | 0.0 | 0.576811 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017920 | RBH | 0.0 | 10.953035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017840 | SBH | 0.058014 | 11.307003 | 0.619336 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017830 | SBH | 2.090966 | 33.446281 | 0.0 |
