Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0539900 | OGI:07058810 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:21280321-21282635 | ||||||||
| Gene Symbol | PR2 | ||||||||||
| DNA seq | AGAGTAATTAAGTTTCTTATTCATTTCAACACGAGTGAACGATACATTTATTACTTACTTAAAATTCCAAACCGGAATACATACAATGTCGTCCTTATTTTTATTTGACCATAATATGGACTTATTCCTTTCTTAGAGAATATGGACTTATTCTTCAATCCCATCCTCTTACTGCCGAGTCTTCTGTACATTCAAGAGTTGTTTGGTGAGAGTACGCAGTTTCCAATCTCTGCAAAATATGATTAAATGAGCACCGGTGAAAACCATTTACTGCTCATGAAATGAAAGCGTTCAATTATTGTTCAGGCAAGGATGTGATTTAAGTGGTATGAGATATATTAATTGAACGCATTCTAAAATGAACGTGAACTCACTTGGTTGTTGTGTGACAATGGTAGCAGCGCCGTTAAAATCACATGACCCACTGGCACGACCGGTAGTCTGATAATAGTCGTTGAATGCATAGGTTGCATGCGCTACCTTGGTGTCAGGGTCAAAGCATTGCGCACCACGCTGGATAGCGCTGCAATCTGCGCAGCTACCGCATGCATAGTCTAGCGCATTCTGCAAACGTGTGTCCCCAACCTCCGGTTTCGCAATGCACCAGCTTGGGTTCGGGTCGCAGATACCTTTATACATTTTGGTTAACAAATAGCGAATAAGAAATGGATGCATAGATGTAGAAACAGTATCCTGAAAACTTAATAAGGATGGAGAGGAAACTAACTTGGTGAAGGCTTGTAGACAATAAAAGCAGCACCAGAGAAGTCACATGTACCGCTAGCTTGGCTCTTACGTTGGTAGTAGTCATTAAACGCGTAAGATGCGTGTGCGACCAAGGTGTTTGGTGCAAAGCATGTCTTGCCTGGTTGGATAGCACCACAATCTGCACCATTACTGCAAGCCCAATCCAACGCTGCTTGCAGCCGGGTGCTCCCAACTGCTGAATTTGCCACACACCAACTTGCTTTTGTAGGGCAAACATTACCACCACCACCATTGTGAAAGTCAACTTGGTAAACCTCCGTCCCGTCTGGGTAGAATAAGCCAAAGTTTTGTTCTACAGATGCTCCGCCCTTCAAATTCTCGTTGAAAAGAGCAAAGATGTATACGGAGACATCAGGCATACCGGTGGCTCCGAATAGTGCACGACTGATAAGACCATTGTTAAAAGCTTGGGCGTTGGCTTTTGTAGCCACGTCTACTTGAACATCATCTAGTGTGGACAACTGAGGGAGCCGACCACCAGAGGGATGCCCACATTCTGAACATTTCACGGGTATCCTTGGAGACGGGCGCCCCCGTCTTGCTTGGGCCATTGAGACTCTCACACTACCACCTGAAACATGGTCTATAGCGAAGTAAACAGCATCTAGCTGAGCATCAAAGAGGCTATGGTATGTGATGCCACTTGCTTGATCGACCACAGGAGAGGCGTTGGGGCCAAATACAGCATAATCACGAGAGATTTGGCCATTAGAATTAGCCCAGGCAATATATGGGTAGAAATTAACCATGAGATAGGAGTTGGTTTGTTGCAAGAAGTCGATCATGGGACTCATCACCGACTGGGCGATGTTATCTTGGAACACACCTGCGGATGGCGGGAATGACACCTTGACTGAATCAAAACTAATGGGTGTTGATACCTTTATTGCGTCGGCGAGGCCCAGCCTCGCCAGCGCCGCCTGCACATTCCTCATGGCCGATACCAGCTGTGAGGTCAGGTCAGGTGCTTGCTGAAACACCTCGTTCCCCACGGCCACGCCGTTAATTTGTGAGGAACGGTAGTACGGCAACACGTAGTTTTTCACCCAACTGAGCGCACTATTGAAATCCTTGGCGGAGCCAGCTACTAGATCTCTATTGGACATCGCCACCATCACCTTGATGTTTTGGTTGGCCAGCGCGTTTAGCACGGTCGGGTCGGCGTCGTAGATCCTCACCATGGTGATACCCTTTGCCTTGAGAAGGCTAACCACGGACGGTGGATCTATCAGATTATTCCCATCCCTCCCGTAGCACACGCCCACCTCGCCCCCATCTGCAGTGCAAGAAAAACATTTTTCGCGAACACGCAAAAGAATTACACGTCGATATATTATAAGCAAAGAAAAACAAAAAAAAACAACGCACCACACTGCCGTTGATACAGAGCTGCAACTACACCGTTTACCTGCACGTGAGAGGAAGAGCAGCGGCAATGCGGCGGCAAGGATGAGGTGAGCGAGAGCGAGCGCCATATGGCCTCTTGTCCTGCGAGCCGTGGCGATCGAGTGGCAGAGGAAAGCAGGGTAAAATATGACGACGACTAT
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| CDS seq | ATGGCGCTCGCTCTCGCTCACCTCATCCTTGCCGCCGCATTGCCGCTGCTCTTCCTCTCACGTGCAGGTAAACGGTGTAGTTGCAGCTCTGTATCAACGGCAGTGTGGTGCGTTGTTTTTTTTTGTTTTTCTTTGCTTATAATATATCGACGTGTAATTCTTTTGCGTGTTCGCGAAAAATGTTTTTCTTGCACTGCAGATGGGGGCGAGGTGGGCGTGTGCTACGGGAGGGATGGGAATAATCTGATAGATCCACCGTCCGTGGTTAGCCTTCTCAAGGCAAAGGGTATCACCATGGTGAGGATCTACGACGCCGACCCGACCGTGCTAAACGCGCTGGCCAACCAAAACATCAAGGTGATGGTGGCGATGTCCAATAGAGATCTAGTAGCTGGCTCCGCCAAGGATTTCAATAGTGCGCTCAGTTGGGTGAAAAACTACGTGTTGCCGTACTACCGTTCCTCACAAATTAACGGCGTGGCCGTGGGGAACGAGGTGTTTCAGCAAGCACCTGACCTGACCTCACAGCTGGTATCGGCCATGAGGAATGTGCAGGCGGCGCTGGCGAGGCTGGGCCTCGCCGACGCAATAAAGGTATCAACACCCATTAGTTTTGATTCAGTCAAGGTGTCATTCCCGCCATCCGCAGGTGTGTTCCAAGATAACATCGCCCAGTCGGTGATGAGTCCCATGATCGACTTCTTGCAACAAACCAACTCCTATCTCATGGTTAATTTCTACCCATATATTGCCTGGGCTAATTCTAATGGCCAAATCTCTCGTGATTATGCTGTATTTGGCCCCAACGCCTCTCCTGTGGTCGATCAAGCAAGTGGCATCACATACCATAGCCTCTTTGATGCTCAGCTAGATGCTGTTTACTTCGCTATAGACCATGTTTCAGGTGGTAGTGTGAGAGTCTCAATGGCCCAAGCAAGACGGGGGCGCCCGTCTCCAAGGATACCCGTGAAATGTTCAGAATGTGGGCATCCCTCTGGTGGTCGGCTCCCTCAGTTGTCCACACTAGATGATGTTCAAGTAGACGTGGCTACAAAAGCCAACGCCCAAGCTTTTAACAATGGTCTTATCAGTCGTGCACTATTCGGAGCCACCGGTATGCCTGATGTCTCCGTATACATCTTTGCTCTTTTCAACGAGAATTTGAAGGGCGGAGCATCTGTAGAACAAAACTTTGGCTTATTCTACCCAGACGGGACGGAGGTTTACCAAGTTGACTTTCACAATGGTGGTGGTGGTAATGTTTGCCCTACAAAAGCAAGTTGGTGTGTGGCAAATTCAGCAGTTGGGAGCACCCGGCTGCAAGCAGCGTTGGATTGGGCTTGCAGTAATGGTGCAGATTGTGGTGCTATCCAACCAGGCAAGACATGCTTTGCACCAAACACCTTGGTCGCACACGCATCTTACGCGTTTAATGACTACTACCAACGTAAGAGCCAAGCTAGCGGTACATGTGACTTCTCTGGTGCTGCTTTTATTGTCTACAAGCCTTCACCAAGTATCTGCGACCCGAACCCAAGCTGGTGCATTGCGAAACCGGAGGTTGGGGACACACGTTTGCAGAATGCGCTAGACTATGCATGCGGTAGCTGCGCAGATTGCAGCGCTATCCAGCGTGGTGCGCAATGCTTTGACCCTGACACCAAGGTAGCGCATGCAACCTATGCATTCAACGACTATTATCAGACTACCGGTCGTGCCAGTGGGTCATGTGATTTTAACGGCGCTGCTACCATTGTCACACAACAACCAAAGATTGGAAACTGCGTACTCTCACCAAACAACTCTTGA
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| Protein seq | MALALAHLILAAALPLLFLSRAGKRCSCSSVSTAVWCVVFFCFSLLIIYRRVILLRVREKCFSCTADGGEVGVCYGRDGNNLIDPPSVVSLLKAKGITMVRIYDADPTVLNALANQNIKVMVAMSNRDLVAGSAKDFNSALSWVKNYVLPYYRSSQINGVAVGNEVFQQAPDLTSQLVSAMRNVQAALARLGLADAIKVSTPISFDSVKVSFPPSAGVFQDNIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSNGQISRDYAVFGPNASPVVDQASGITYHSLFDAQLDAVYFAIDHVSGGSVRVSMAQARRGRPSPRIPVKCSECGHPSGGRLPQLSTLDDVQVDVATKANAQAFNNGLISRALFGATGMPDVSVYIFALFNENLKGGASVEQNFGLFYPDGTEVYQVDFHNGGGGNVCPTKASWCVANSAVGSTRLQAALDWACSNGADCGAIQPGKTCFAPNTLVAHASYAFNDYYQRKSQASGTCDFSGAAFIVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACGSCADCSAIQRGAQCFDPDTKVAHATYAFNDYYQTTGRASGSCDFNGAATIVTQQPKIGNCVLSPNNS |
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| Function | Glucan endo-1,3-beta-glucosidase 13 [UniProtKB/Swiss-Prot:Q9FJU9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0539900 | OsNip_07t0539900-01 | Chr07 | 21280322 | 21282626 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGCTCGCTCTCGCTCACCTCATCCTTGCCGCCGCATTGCCGCTGCTCTTCCTCTCACGTGCAGGTAAACGGTGTAGTTGCAGCTCTGTATCAACGGCAGTGTGGTGCGTTGTTTTTTTTTGTTTTTCTTTGCTTATAATATATCGACGTGTAATTCTTTTGCGTGTTCGCGAAAAATGTTTTTCTTGCACTGCAGATGGGGGCGAGGTGGGCGTGTGCTACGGGAGGGATGGGAATAATCTGATAGATCCACCGTCCGTGGTTAGCCTTCTCAAGGCAAAGGGTATCACCATGGTGAGGATCTACGACGCCGACCCGACCGTGCTAAACGCGCTGGCCAACCAAAACATCAAGGTGATGGTGGCGATGTCCAATAGAGATCTAGTAGCTGGCTCCGCCAAGGATTTCAATAGTGCGCTCAGTTGGGTGAAAAACTACGTGTTGCCGTACTACCGTTCCTCACAAATTAACGGCGTGGCCGTGGGGAACGAGGTGTTTCAGCAAGCACCTGACCTGACCTCACAGCTGGTATCGGCCATGAGGAATGTGCAGGCGGCGCTGGCGAGGCTGGGCCTCGCCGACGCAATAAAGGTATCAACACCCATTAGTTTTGATTCAGTCAAGGTGTCATTCCCGCCATCCGCAGGTGTGTTCCAAGATAACATCGCCCAGTCGGTGATGAGTCCCATGATCGACTTCTTGCAACAAACCAACTCCTATCTCATGGTTAATTTCTACCCATATATTGCCTGGGCTAATTCTAATGGCCAAATCTCTCGTGATTATGCTGTATTTGGCCCCAACGCCTCTCCTGTGGTCGATCAAGCAAGTGGCATCACATACCATAGCCTCTTTGATGCTCAGCTAGATGCTGTTTACTTCGCTATAGACCATGTTTCAGGTGGTAGTGTGAGAGTCTCAATGGCCCAAGCAAGACGGGGGCGCCCGTCTCCAAGGATACCCGTGAAATGTTCAGAATGTGGGCATCCCTCTGGTGGTCGGCTCCCTCAGTTGTCCACACTAGATGATGTTCAAGTAGACGTGGCTACAAAAGCCAACGCCCAAGCTTTTAACAATGGTCTTATCAGTCGTGCACTATTCGGAGCCACCGGTATGCCTGATGTCTCCGTATACATCTTTGCTCTTTTCAACGAGAATTTGAAGGGCGGAGCATCTGTAGAACAAAACTTTGGCTTATTCTACCCAGACGGGACGGAGGTTTACCAAGTTGACTTTCACAATGGTGGTGGTGGTAATGTTTGCCCTACAAAAGCAAGTTGGTGTGTGGCAAATTCAGCAGTTGGGAGCACCCGGCTGCAAGCAGCGTTGGATTGGGCTTGCAGTAATGGTGCAGATTGTGGTGCTATCCAACCAGGCAAGACATGCTTTGCACCAAACACCTTGGTCGCACACGCATCTTACGCGTTTAATGACTACTACCAACGTAAGAGCCAAGCTAGCGGTACATGTGACTTCTCTGGTGCTGCTTTTATTGTCTACAAGCCTTCACCAAGTATCTGCGACCCGAACCCAAGCTGGTGCATTGCGAAACCGGAGGTTGGGGACACACGTTTGCAGAATGCGCTAGACTATGCATGCGGTAGCTGCGCAGATTGCAGCGCTATCCAGCGTGGTGCGCAATGCTTTGACCCTGACACCAAGGTAGCGCATGCAACCTATGCATTCAACGACTATTATCAGACTACCGGTCGTGCCAGTGGGTCATGTGATTTTAACGGCGCTGCTACCATTGTCACACAACAACCAAAGATTGGAAACTGCGTACTCTCACCAAACAACTCTTGA
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| Protein seq | MALALAHLILAAALPLLFLSRAGKRCSCSSVSTAVWCVVFFCFSLLIIYRRVILLRVREKCFSCTADGGEVGVCYGRDGNNLIDPPSVVSLLKAKGITMVRIYDADPTVLNALANQNIKVMVAMSNRDLVAGSAKDFNSALSWVKNYVLPYYRSSQINGVAVGNEVFQQAPDLTSQLVSAMRNVQAALARLGLADAIKVSTPISFDSVKVSFPPSAGVFQDNIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSNGQISRDYAVFGPNASPVVDQASGITYHSLFDAQLDAVYFAIDHVSGGSVRVSMAQARRGRPSPRIPVKCSECGHPSGGRLPQLSTLDDVQVDVATKANAQAFNNGLISRALFGATGMPDVSVYIFALFNENLKGGASVEQNFGLFYPDGTEVYQVDFHNGGGGNVCPTKASWCVANSAVGSTRLQAALDWACSNGADCGAIQPGKTCFAPNTLVAHASYAFNDYYQRKSQASGTCDFSGAAFIVYKPSPSICDPNPSWCIAKPEVGDTRLQNALDYACGSCADCSAIQRGAQCFDPDTKVAHATYAFNDYYQTTGRASGSCDFNGAATIVTQQPKIGNCVLSPNNS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0539900 | OsNip_07t0539900-02 | Chr07 | 21280321 | 21282635 | - | IsoSeq | ||
| CDS seq | AGTCGTCGTCATATTTTACCCTGCTTTCCTCTGCCACTCGATCGCCACGGCTCGCAGGACAAGAGGCCATATGGCGCTCGCTCTCGCTCACCTCATCCTTGCCGCCGCATTGCCGCTGCTCTTCCTCTCACGTGCAGATGGGGGCGAGGTGGGCGTGTGCTACGGGAGGGATGG |
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| Protein seq | SRRHILPCFPLPLDRHGSQDKRPYGARSRSPHPCRRIAAALPLTCRWGRGGRVLREGW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.214078 | 1.350424 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35560 | RBH | 0.812356 | 0.845513 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0539900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018130 | RBH | 0.0 | 10.813023 | 0.457711 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018060 | RBH | 0.0 | 1.473556 | 0.913123 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018040 | RBH | 0.000000 | 2.183603 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017930 | RBH | 0.173893 | 0.026413 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018060 | RBH | 0.0 | 50.745064 | 0.522968 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0348700 | RBH | 0.50109 | 344.448608 | 0.0378195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018560 | RBH | 0.0 | 3.383519 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0360000 | RBH | 2.9367415 | 162.4820595 | 0.036435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017820 | RBH | 0.080081 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017970 | RBH | 0.0 | 8.920775 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017850 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018140 | RBH | 0.0 | 0.576811 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017920 | RBH | 0.0 | 10.953035 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017870 | RBH | 0.0 | 2.525003 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017860 | RBH | 0.0 | 19.509863 | 0.0 |
