Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| Os07g0539400 | OGI:07058810 | 16/16 | Nipponbare | IRGSP 1.0 | RAP-db | Chr07:21245036-21247034 | ||||||||
| Gene Symbol | GNS13, Gns13, OsGns13, GNS12, Gns12, OsGns12 | ||||||||||
| DNA seq | TCAGTACGCTTTGTCCAGTTCAAGCATTGGCGGAAGGACGCAGTTTCCAATCTCTGAAAATAATTCAACAAACACCTAAGATCACCATTTAACTAGTTGAATCATCACGTAGTGTACAAAAACAAGTGTGTATTTTTTTTACGCAAAATGTACATTATTAGCACTTGAAGGTTTCGAACGCATTGTTAATGGCATTTAGTTTCAAAACAAAACATACAATGGAGATTAAAATGGCACGTGGTTGTAAGCCACGAAAGAAGATGGATCAATTAATTAGCTATGTTTGCTTCGAAAAATTATATATGGGAGAAGAAATGCATGGGCAATAATTTTTGAAAGCAATATCTGAAACAAACAAGATGAGAATATCTGTTGAGCTTGAACTCACCTGGTGCCTGGTAGGTAATGGAACCAGCACCACCGAAGTCACACGAGCCACTGACTCGGCCAACACGCTGGTAATAGTCGTTGAATGCGTAGGATGCGTGCGCCACCTTAGTGTTAGGCTCGAAACACCGTGCACCGGGCTGGATGGCGCTGCAGTCTGCACAGCTGCCGCATGCATAATCTAGGGCTGCCTGTAGCCGCATGTCCCCAACTGCAGGGTTCGCGATACACCAACTTGGATTTGGGTCGCAAATGCCTGCAATTTAGTAGATAAACAGTGAGGCAGATTTATCAAATGGTTGTGAGAACTAAACAAAATTGCATTTTAAGAAATATGTGGTCGTAGGAACTAACTTTCTGATGGTTGGAAGACAATATAAGCAGCGCCAGCAAAGTCGCATGTCCCATTGGCTTGGCCCATCCGCTGGTAGTAGTCATTGAATGCGAAAGACGCATGCGCAACCATTGTGTTTGGCTCGAAGCAAGGTTTGCCCTGTTGGATAGCGCTGCAGTCTGCGCCGTTACTACAAGCCCAATCCAACGCCGCCTGCAGCCGGGAATTCCCCACAGCTAAATTTGCCACGCACCAGCTCGCCTTGGTGGGACAAATACCACCACCATGAAAATCAACCTCGTAAACCTTTGTACCGTTAGGGTAGAACAGGCCGAAGTTGCGTTCTACAGATGCTCCAGCCTTCTTGTTCTCGTTGAAAAGAGCGAAGATGTACACAGAGACATCAGGCATACCAGAGGCTCCAAACAGAGCGCGTCTGATAATACCATTGTTGAATGCTTGGGCGTTAGCTTTTGTAGCCACATCCACTTCGGCATCAGCTTGTGTGGTCAACTTGCGGAACTGACCACCGGAGGGATGCCCACATTCCGAACATTTGACGGGCACCCTTGGTGTCGGGTGCCCCCATCTTGTTTGGGCCATTGAGGCCCTCACACTATCACCAGAAACCTGATTTATAGCGTAGTAAACAGCATCGAGCTGGGCATCAAAGAGACTATAGTATGTGATGTGGCTCCACGGATCGACTACACCGGCGTTGGGGCCAAATGTAGCGTAATCGCGGGAGATCTGGCCTTTAGAGTTAGCCCAGGCAATATATGGGTAGAAATTGACCATGAGATATGAGTTGGTCTGTTGCAAGAAATCGATCATGGGACTCATTACCGACTGGGCGATGCTGTCTTGAAACACACCCTTGGATGATGGCCATGACACATTGACCGCATCAAAATTAATGGGTGTTGATACCTTTATGATGTCGGCAAGGCCCAGTCTCGCTAGCGCCGTCTGCACATTCTTCATCGCCGGTAACAGCTGAGGGGTCAAGTTGGGTGCTTGCCTGAACACCTCATTCCCCACAGCCACACCATTGATTTGTGTGCCCTGGTTATAGTACGGAACAATGTTTGTTTTCACCCAGTCTAGCGCACTTCCCTGATCGTGGCCTGCAGAAGCAAGGTCCTTGTTGGGTAGTGCCACCATCACCTTGATGCCTGTGTTGGACAGCGATCTCAGCACCGTCGGGTCGGCGTCGTAGATCCTCACCTTCGTGATGCCGTTCTCCTTCAGAAGATTCACCACGGCCGGTGGATCCAT
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| CDS seq | ATGGATCCACCGGCCGTGGTGAATCTTCTGAAGGAGAACGGCATCACGAAGGTGAGGATCTACGACGCCGACCCGACGGTGCTGAGATCGCTGTCCAACACAGGCATCAAGGTGATGGTGGCACTACCCAACAAGGACCTTGCTTCTGCAGGCCACGATCAGGGAAGTGCGCTAGACTGGGTGAAAACAAACATTGTTCCGTACTATAACCAGGGCACACAAATCAATGGTGTGGCTGTGGGGAATGAGGTGTTCAGGCAAGCACCCAACTTGACCCCTCAGCTGTTACCGGCGATGAAGAATGTGCAGACGGCGCTAGCGAGACTGGGCCTTGCCGACATCATAAAGGTATCAACACCCATTAATTTTGATGCGGTCAATGTGTCATGGCCATCATCCAAGGGTGTGTTTCAAGACAGCATCGCCCAGTCGGTAATGAGTCCCATGATCGATTTCTTGCAACAGACCAACTCATATCTCATGGTCAATTTCTACCCATATATTGCCTGGGCTAACTCTAAAGGCCAGATCTCCCGCGATTACGCTACATTTGGCCCCAACGCCGGTGTAGTCGATCCGTGGAGCCACATCACATACTATAGTCTCTTTGATGCCCAGCTCGATGCTGTTTACTACGCTATAAATCAGGTTTCTGGTGATAGTGTGAGGGCCTCAATGGCCCAAACAAGATGGGGGCACCCGACACCAAGGGTGCCCGTCAAATGTTCGGAATGTGGGCATCCCTCCGGTGGTCAGTTCCGCAAGTTGACCACACAAGCTGATGCCGAAGTGGATGTGGCTACAAAAGCTAACGCCCAAGCATTCAACAATGGTATTATCAGACGCGCTCTGTTTGGAGCCTCTGGTATGCCTGATGTCTCTGTGTACATCTTCGCTCTTTTCAACGAGAACAAGAAGGCTGGAGCATCTGTAGAACGCAACTTCGGCCTGTTCTACCCTAACGGTACAAAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGGGAATTCCCGGCTGCAGGCGGCGTTGGATTGGGCTTGTAGTAACGGCGCAGACTGCAGCGCTATCCAACAGGGCAAACCTTGCTTCGAGCCAAACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACATGCGACTTTGCTGGCGCTGCTTATATTGTCTTCCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTGCAGTTGGGGACATGCGGCTACAGGCAGCCCTAGATTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGTGCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGTCAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTACCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAATGCTTGAACTGGACAAAGCGTACTGA
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| Protein seq | MDPPAVVNLLKENGITKVRIYDADPTVLRSLSNTGIKVMVALPNKDLASAGHDQGSALDWVKTNIVPYYNQGTQINGVAVGNEVFRQAPNLTPQLLPAMKNVQTALARLGLADIIKVSTPINFDAVNVSWPSSKGVFQDSIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSKGQISRDYATFGPNAGVVDPWSHITYYSLFDAQLDAVYYAINQVSGDSVRASMAQTRWGHPTPRVPVKCSECGHPSGGQFRKLTTQADAEVDVATKANAQAFNNGIIRRALFGASGMPDVSVYIFALFNENKKAGASVERNFGLFYPNGTKVYEVDFHGGGICPTKASWCVANLAVGNSRLQAALDWACSNGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICDPNPSWCIANPAVGDMRLQAALDYACGSCADCSAIQPGARCFEPNTKVAHASYAFNDYYQRVGRVSGSCDFGGAGSITYQAPEIGNCVLPPMLELDKAY |
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| Function | Glucan endo-1,3-beta-glucosidase 2 [UniProtKB/Swiss-Prot:Q9C7U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| Os07g0539400 | Os07t0539400-00 | Chr07 | 21245036 | 21247034 | - | irgsp1_rep | ||
| CDS seq | ATGGATCCACCGGCCGTGGTGAATCTTCTGAAGGAGAACGGCATCACGAAGGTGAGGATCTACGACGCCGACCCGACGGTGCTGAGATCGCTGTCCAACACAGGCATCAAGGTGATGGTGGCACTACCCAACAAGGACCTTGCTTCTGCAGGCCACGATCAGGGAAGTGCGCTAGACTGGGTGAAAACAAACATTGTTCCGTACTATAACCAGGGCACACAAATCAATGGTGTGGCTGTGGGGAATGAGGTGTTCAGGCAAGCACCCAACTTGACCCCTCAGCTGTTACCGGCGATGAAGAATGTGCAGACGGCGCTAGCGAGACTGGGCCTTGCCGACATCATAAAGGTATCAACACCCATTAATTTTGATGCGGTCAATGTGTCATGGCCATCATCCAAGGGTGTGTTTCAAGACAGCATCGCCCAGTCGGTAATGAGTCCCATGATCGATTTCTTGCAACAGACCAACTCATATCTCATGGTCAATTTCTACCCATATATTGCCTGGGCTAACTCTAAAGGCCAGATCTCCCGCGATTACGCTACATTTGGCCCCAACGCCGGTGTAGTCGATCCGTGGAGCCACATCACATACTATAGTCTCTTTGATGCCCAGCTCGATGCTGTTTACTACGCTATAAATCAGGTTTCTGGTGATAGTGTGAGGGCCTCAATGGCCCAAACAAGATGGGGGCACCCGACACCAAGGGTGCCCGTCAAATGTTCGGAATGTGGGCATCCCTCCGGTGGTCAGTTCCGCAAGTTGACCACACAAGCTGATGCCGAAGTGGATGTGGCTACAAAAGCTAACGCCCAAGCATTCAACAATGGTATTATCAGACGCGCTCTGTTTGGAGCCTCTGGTATGCCTGATGTCTCTGTGTACATCTTCGCTCTTTTCAACGAGAACAAGAAGGCTGGAGCATCTGTAGAACGCAACTTCGGCCTGTTCTACCCTAACGGTACAAAGGTTTACGAGGTTGATTTTCATGGTGGTGGTATTTGTCCCACCAAGGCGAGCTGGTGCGTGGCAAATTTAGCTGTGGGGAATTCCCGGCTGCAGGCGGCGTTGGATTGGGCTTGTAGTAACGGCGCAGACTGCAGCGCTATCCAACAGGGCAAACCTTGCTTCGAGCCAAACACAATGGTTGCGCATGCGTCTTTCGCATTCAATGACTACTACCAGCGGATGGGCCAAGCCAATGGGACATGCGACTTTGCTGGCGCTGCTTATATTGTCTTCCAACCATCAGAAAGCATTTGCGACCCAAATCCAAGTTGGTGTATCGCGAACCCTGCAGTTGGGGACATGCGGCTACAGGCAGCCCTAGATTATGCATGCGGCAGCTGTGCAGACTGCAGCGCCATCCAGCCCGGTGCACGGTGTTTCGAGCCTAACACTAAGGTGGCGCACGCATCCTACGCATTCAACGACTATTACCAGCGTGTTGGCCGAGTCAGTGGCTCGTGTGACTTCGGTGGTGCTGGTTCCATTACCTACCAGGCACCAGAGATTGGAAACTGCGTCCTTCCGCCAATGCTTGAACTGGACAAAGCGTACTGA
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| Protein seq | MDPPAVVNLLKENGITKVRIYDADPTVLRSLSNTGIKVMVALPNKDLASAGHDQGSALDWVKTNIVPYYNQGTQINGVAVGNEVFRQAPNLTPQLLPAMKNVQTALARLGLADIIKVSTPINFDAVNVSWPSSKGVFQDSIAQSVMSPMIDFLQQTNSYLMVNFYPYIAWANSKGQISRDYATFGPNAGVVDPWSHITYYSLFDAQLDAVYYAINQVSGDSVRASMAQTRWGHPTPRVPVKCSECGHPSGGQFRKLTTQADAEVDVATKANAQAFNNGIIRRALFGASGMPDVSVYIFALFNENKKAGASVERNFGLFYPNGTKVYEVDFHGGGICPTKASWCVANLAVGNSRLQAALDWACSNGADCSAIQQGKPCFEPNTMVAHASFAFNDYYQRMGQANGTCDFAGAAYIVFQPSESICDPNPSWCIANPAVGDMRLQAALDYACGSCADCSAIQPGARCFEPNTKVAHASYAFNDYYQRVGRVSGSCDFGGAGSITYQAPEIGNCVLPPMLELDKAY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | None | None | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0539400 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g35520 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0538000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0018100 | SBH | 0.000000 | 487.809998 | 1.160585 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0018040 | RBH | 0.555259 | 3.514833 | 0.185651 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0018020 | SBH | 1.783775 | 25.033304 | 1.999873 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0017910 | RBH | 0.255038 | 0.294452 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0018060 | SBH | 0.0 | 50.745064 | 0.522968 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0346200 | RBH | 0.301506 | 0.2162215 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0018560 | SBH | 0.0 | 3.383519 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0359400 | SBH | 4.826267 | 4.8051665 | 0.0461295 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0017820 | SBH | 0.080081 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0017930 | RBH | 0.287123 | 6.647925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0017820 | SBH | 0.0 | 126.710030 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0018110 | SBH | 0.0 | 14.956555 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0017880 | RBH | 0.0 | 85.263474 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G017840 | SBH | 0.058014 | 11.307003 | 0.619336 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0017830 | RBH | 2.090966 | 33.446281 | 0.0 |
