Basic Info |
Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
OsNip_07g0138100 | OGI:07005700 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:2007670-2012928 | ||||||||
Gene Symbol | OsSWAP70B, SWAP70B, SIP21 | ||||||||||
DNA seq | ACGCGCGCGGGGACAGCCTTCCGACCTCCTCCCCTCTGATCCGGCGCGGCCATGGCGTCGAGCGGGAGCAGCACGGTGAGTCCTTTCACTGTCTTTCTCGGGATCACGCTGGATAGGACGCAGAGCTCTGCGAGATTTGTAGGGATGTGGGTTTCGTTTCGAGCGGAATCTCGCTAAAGCTGGGAATTTGTCTTTTTTTTTTTTTGTTGTTGCGTGGTCGATGAGTGCAGGTGGTGGGAGAGATGGAGAGCAGCTTGGAGCGGGTGAGGCGGCAGCTCTCGTCCACCTCCAGCCGCCACCTCCTTCAGGGCCCTCTCCTGAAGCGATCCGATACAGTAATTTCTTGTCTTAATTTTTCTTCTCCATATTGCGTAATTATCCCCTTAGCATTTTCTCCTGTTTCTTGATTTCTGCCAACTATAACCTGCTATTGTTACTGTGGCTGTGGCTAGGATGATGAATTAGGAGGATTTATATGTTGTTCAGTATACTTTAAGCTTCTGTTTGTTTTGCGTTTTAGGAGTTTCTGACATTTTGCTATCTGAACTTTTACTTTGTCGATTCTGGTTTTAAGTTTAGCTATGAAGTAAAATCCATAATACAGTGGGAGTGACATATTGTAGAAAAACCATAATAGAGTGGGAGCGACATATTGTAGAAAAGGTAGTAGGTGCCTGTGTTACATTTGTAGGCAGTGTCCAAGCACAAAGTCTCATGTATGTCAGTTGGTTTGTGAGGTTATCGGGATGTTTCCTGCCTCTCCCTGTTATCTAGATGCTTGTTTGCAGATCAGAATGCAGGGATGTAATTGGCAACTTTGGATTTGTTTTGTTTTTTTGTTTTGGTGTAGATGTAAATATGATGTTTCTTAAAACAAATGCCGGTTCCCCTTTTGACTTCTTGATAAATTTTCGTGTGTTTGTAGTCCATTAGTCATTTATCTTCTGCTTTTGCATTACTGAATGTACTATGCCAGTCTTCCTATTTCCCCTTGATAAACTTCACACTTTCAATTGTCAGCTAAGAAAATGGAATGAACGGTGGGTTATACTTGATCCTGCAACTGGAAAGATGGAATACAAGTATGCAAAATTACAGCTCCTTTTGAATATTTGAACCATAGAATTTTTTATCTTGTGGTCATAGTTTAACTTCTCATTTAGGATTCGTAGAAGTGATGCAGCTGTGAGGGGAATAATAGTGTTTGATTCAACAAGCACTGTGACGTTGTCGCCAATGAACTTTCAGTACGATATGCTTCATTCCTAGTCCATTATTATATTTCAGACTTACGCGATAAGCACTAAACTGACTCATGTTTCCTTTGGTGCAGTGGACTGCCGAAATATGATGGATGCTGTTTCTGTATCCACACGGACTAACTTTTTTTAACCTTACATTCTTTTGCATGGGTGATATTTATTTTGGGACCCTCTATTTTGTTTTATTCAATGACTAATGTTCTAGATATTGGAACCCCACAGAAAAAGGAATATTTTCTTTGTGCAGAAACTCCTAGTGCTGCAAGAGCTTGGGTGTCCACTTTACAGTAAGCTTGTGATCTATGATTGTCGATGTTATTATTTTTAAACCATGTGCACAGCATTCTTCCTTTATTATATTAGTAGTTTGCTACTATGGGGTATCTTACAAATGTTTGAAAAAAATTTAGAGTGAATTCCACTTTGGGCTAGGTTTAGTTATCTATATTGCAAATTAGACCAGGCATTAGTAAGCCTTTTCACCTAGAACTAGGTATTGTTACAAATTTTGCACCTTGTACCGGTGGCCCACATGTCAGTGGATCTTTCTCCTTCTTCCTCCTCAAAACTCCCTGAGCCCAACTCTATCCACACCGGTGAGCTTGTCTCTTCAGCCAGTAGCAGCAAATAGCGGCTGGCCAGCTAGCCCTCTCAGGCCCACTCCAACTCCTGTTACACGACCGGCTGCAGCATGCAGAAGTGCCAGGGAGCGCACAAGACGGAGAACAACGAGATTGAATAATCGAATCAATGTATGCACATGGCCTAAGAATGGTTCAGGAGCACAACCCACTGCATTGTCAGCTCTCCTCCAATTGTCTTGGACTTAATTATTTCCTTCAAATTGCAAATCGGGAGCGTCGCAACCCTCGGCGGAGGTCGAGCGTGGCTGCAGTGCCGGCAGAGTTTGAGCGTGCTTAGTCTTCTCATCCAGCCTTCCCTCTCTCACCTCAAGTTTGTCTAGAGCATCTAGAATAAATGGAGATGAGGCAGGATAGATCAGGTGTGCGTCGGCAGGAGTCACTTGAGAACAGCGGCAGTGGAAGAACTGGCCCAAAGTGAAACATTAATGTAGACTTCCCTGGTCCAAAGTGAAAACTTAGTCCTATCCCTAGTCCAAGTTGCAACTTAGGTAAAAAATAGTGGTCCAATATGAAATTTACTCAAAAATTTAATGGTTTAATTGCTTAACTACCGTAATGATTTATTATGATATATTTGAAGCAAAATGATATTTTGTACATTTTTTGTAAGACTTATACAATAAGATACATTGTTGCGAGAAACTGACATGTTAATATCAATTTAAGCTAACACGGGTGCAACACCAGCCTGCAGTTTTGGGTATTGAGGTTTGGTGATCTATAAGTACCTCAAAACGTTAAAACTCGGTACTTTTCCAACAAATTTCATATTCTGATGTTTGCATTAGTTCAGTTGCCGCGTATGTATTTGTTAAAAGATTACAATGCTTGAGGGCTTGTGCTTGGGAGGCACGTTGACTCGTGGAGGTTAGAGCCTGGGAAAATCGAGCTGTTTCATTATTCCAAATAAGTGCTTGTGGTGCTATTCATAGAGGCAGAGGCTTTCTTGTTCACTGTTTGTATCTATACTGCTATCAGTTGTCCACCCGACAACTAAGCTAATGGGCTATAAGCTGGCTAAAGGCTTTCATTTGGTGCTTTGTGTTATTATTTCTCTATTGTTTCAGCTGTGAATCGTGAAACCTAGTAAAATTTCTTGTTTTACCTGCAGTGCTTCTCAGTTGGTGCTACAAGCTCACAAAGAAGCAGTGAATTCGTTGGGTGGAAATGGTCCTACCAAATTGGGAAAAGTTGCTACAGTTGTGGCTGTGGCCAATGCGACTGCAATCGAAGCATCCAAAGAGGTAGAGGCAGCGATGAAGGTATCCCTGCGGGCAGCTTTGGGCTCAACTACAAATAAACTCAGTAAAGGTCAATTAGATGATCTCACTATAATGATGGTAAGCTCTTCTTCGTACTACGTACTAAGGAATACCTGAATCAAAACTTAGTAGTTGTGAAGGAAATCACTACTGATGAATGTAGGCTTACTGTTAGACCCTTAAAAGTAAATATCCTTGCTGTAGTCAATTAATATTATATTCAAGTGTTACACTATGTTCGCAAACTAAGTTATTGGTACTTAATTTATCAGACCAGTGAGTAATATAAAAAGAACATCTGTATCTATTATGAAGTATCGAAATTTGCAACTCAAGTAGTCTGATAGAACTTCACAAACTGGCATCAACAGCAGCTCTGATAAACTGAATGTTTACTTTGGTACATTCAAACCTGTTCGTCCACTTGGCTTATGTTTGTTCCTGTTCTTTTGGTTCTTGATGAAAATTTTCCAAACACCGTTATGAGCTATTAACAAGATAGAAAGATTCCTATTAATTTATTTAAAAAATGCTTCTCAAGTTATAGTTTGATTGATAAAAATATGCATTTGCATTTGCTTCTCGGAAGCAGTCTAGTATTTGGTTCTCAGGATCTTTGTCTGAACAATGTCCTTGTATAGTAATTATTTTTAATACTAATGACTGCTTGAGAAAAAAAGAACTACCTATACATTTTGAAGATGCCTTCTTTGGTATTAGTTGTGTATCACTAATGTGAGACTTCTGTTTTTGGATACTGAAGTTTGTTTTTTGTACTGTATATCTATAATTTACAGGAGACCCTTCGAGTTAAAGATGATGAACTTCACCAGTTATTGCAAGATATCCGTGCACGTGATGCAACCATCAGAGAGATTACAGATAAATTACAGGAGACTGCTGAAGCAGCTGAAACTGCTGCTTCTGCAGCTCATTCAATAGATGAGCAGAGAAGATTTTTATCTTCAGAACTTGAACGCCTGAAACAAGATCAGGAAAAACAAATTGAATTTTCATTGCTTAGGGTAATAGCCATTTTAGTTAATCTATATACTATGCATTTTATTATATATAAATATATTTTATTTGTGCATTTACATGGTTATACACCTGAGTATCATGATCCCACCTCATGTTAAATCTGTGAATGTGCATTTTTAAAGGTGAACTGAATTTTGTATTGACAGTTAAGGGAATCGGAAGAAAAGGCAAAGCTTCTTTCAGAAGAGAGGGAGCATTTACTCAAGGAAAGAGATTCTGCTCTTCAAGAAGCTCAAATGTGGCGTTCTGAACTAGGAAAAGCTAGAGGAAATGCTGTAATTTTAGAAGCAGCCGTTGTGAGGGCGGAAGAGAAAGCAAGAGTTTCAGCAGCAGATGCTGATATGCGAATAAATGATGCTGCGAGTAGACTCGATTCTGCGACAAAAGAAAAGGAAGAACTCGTAGCTCTTGTGGACGCGCTACAGTTGCAAATACGAAGGTTCTGCATGTATATTCTACTATTTAATTTCCTGTTCCTTCAATCATTGAAAAGCATCATAAGATTCTTCTAAAAAAACTTGATTGGAGAGTTAAGAAGGTTTTGGAATATCTTCTCTTTGCAGCCAAGACACTAGCACAAAACAAGTCTGCGAGGAGAGGTCGGAGCTGTGCTCCACGTCTTCAAAGCATGTAGACATGGAAGATGATAATGTGGATAAAGCTTGCTTAAGTGATACAGATCCAATACCCATTACTGAGAACATAGTTGATTTGGATGATGATGGAGTCGATATCCCTACAATTGGGGTCACGGAGTGGAATAATCCTCATTCTTCTGAAGTATCTGATGTAAGAGAAGTAACCACTGAACCTGAAGATAACAGCTTGGATATTCCTGTTGATAGCCAACCAGTATCTGAGAATGCTTTCCACGGTTAACCTGGCTTGTTTCTATTCTTAACCCCGTTGGCTTGTATTCTATGTTCTCATTTTAGTTCATTGCAAACATTCATATATTCAAATTAAAGCTCGCTATGAGCTCATGGACTTTAGTTCCACAACGTGTTCACTGTATCCAAGTGGAATAAAACAGTGCAATTGTGGGTGTGT
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CDS seq | ATGGCGTCGAGCGGGAGCAGCACGGTGGTGGGAGAGATGGAGAGCAGCTTGGAGCGGGTGAGGCGGCAGCTCTCGTCCACCTCCAGCCGCCACCTCCTTCAGGGCCCTCTCCTGAAGCGATCCGATACACTAAGAAAATGGAATGAACGGTGGGTTATACTTGATCCTGCAACTGGAAAGATGGAATACAAGATTCGTAGAAGTGATGCAGCTGTGAGGGGAATAATAGTGTTTGATTCAACAAGCACTGTGACGTTGTCGCCAATGAACTTTCATGGACTGCCGAAATATGATGGATGCTGTTTCTATATTGGAACCCCACAGAAAAAGGAATATTTTCTTTGTGCAGAAACTCCTAGTGCTGCAAGAGCTTGGGTGTCCACTTTACATGCTTCTCAGTTGGTGCTACAAGCTCACAAAGAAGCAGTGAATTCGTTGGGTGGAAATGGTCCTACCAAATTGGGAAAAGTTGCTACAGTTGTGGCTGTGGCCAATGCGACTGCAATCGAAGCATCCAAAGAGGTAGAGGCAGCGATGAAGGTATCCCTGCGGGCAGCTTTGGGCTCAACTACAAATAAACTCAGTAAAGGTCAATTAGATGATCTCACTATAATGATGGAGACCCTTCGAGTTAAAGATGATGAACTTCACCAGTTATTGCAAGATATCCGTGCACGTGATGCAACCATCAGAGAGATTACAGATAAATTACAGGAGACTGCTGAAGCAGCTGAAACTGCTGCTTCTGCAGCTCATTCAATAGATGAGCAGAGAAGATTTTTATCTTCAGAACTTGAACGCCTGAAACAAGATCAGGAAAAACAAATTGAATTTTCATTGCTTAGGTTAAGGGAATCGGAAGAAAAGGCAAAGCTTCTTTCAGAAGAGAGGGAGCATTTACTCAAGGAAAGAGATTCTGCTCTTCAAGAAGCTCAAATGTGGCGTTCTGAACTAGGAAAAGCTAGAGGAAATGCTGTAATTTTAGAAGCAGCCGTTGTGAGGGCGGAAGAGAAAGCAAGAGTTTCAGCAGCAGATGCTGATATGCGAATAAATGATGCTGCGAGTAGACTCGATTCTGCGACAAAAGAAAAGGAAGAACTCGTAGCTCTTGTGGACGCGCTACAGTTGCAAATACGAAGCCAAGACACTAGCACAAAACAAGTCTGCGAGGAGAGGTCGGAGCTGTGCTCCACGTCTTCAAAGCATGTAGACATGGAAGATGATAATGTGGATAAAGCTTGCTTAAGTGATACAGATCCAATACCCATTACTGAGAACATAGTTGATTTGGATGATGATGGAGTCGATATCCCTACAATTGGGGTCACGGAGTGGAATAATCCTCATTCTTCTGAAGTATCTGATGTAAGAGAAGTAACCACTGAACCTGAAGATAACAGCTTGGATATTCCTGTTGATAGCCAACCAGTATCTGAGAATGCTTTCCACGGTTAA
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Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG |
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Function | - |
Transcripts
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_07g0138100 | OsNip_07t0138100-02 | Chr07 | 2007670 | 2012928 | + | RAP2018-11-26 | ||
CDS seq | ATGGCGTCGAGCGGGAGCAGCACGGTGGTGGGAGAGATGGAGAGCAGCTTGGAGCGGGTGAGGCGGCAGCTCTCGTCCACCTCCAGCCGCCACCTCCTTCAGGGCCCTCTCCTGAAGCGATCCGATACACTAAGAAAATGGAATGAACGGTGGGTTATACTTGATCCTGCAACTGGAAAGATGGAATACAAGATTCGTAGAAGTGATGCAGCTGTGAGGGGAATAATAGTGTTTGATTCAACAAGCACTGTGACGTTGTCGCCAATGAACTTTCATGGACTGCCGAAATATGATGGATGCTGTTTCTGTATCCACACGGACTAA
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Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFCIHTD |
Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
OsNip_07g0138100 | OsNip_07t0138100-01 | Chr07 | 2007670 | 2012928 | + | RAP2018-11-26 | ||
CDS seq | ATGGCGTCGAGCGGGAGCAGCACGGTGGTGGGAGAGATGGAGAGCAGCTTGGAGCGGGTGAGGCGGCAGCTCTCGTCCACCTCCAGCCGCCACCTCCTTCAGGGCCCTCTCCTGAAGCGATCCGATACACTAAGAAAATGGAATGAACGGTGGGTTATACTTGATCCTGCAACTGGAAAGATGGAATACAAGATTCGTAGAAGTGATGCAGCTGTGAGGGGAATAATAGTGTTTGATTCAACAAGCACTGTGACGTTGTCGCCAATGAACTTTCATGGACTGCCGAAATATGATGGATGCTGTTTCTATATTGGAACCCCACAGAAAAAGGAATATTTTCTTTGTGCAGAAACTCCTAGTGCTGCAAGAGCTTGGGTGTCCACTTTACATGCTTCTCAGTTGGTGCTACAAGCTCACAAAGAAGCAGTGAATTCGTTGGGTGGAAATGGTCCTACCAAATTGGGAAAAGTTGCTACAGTTGTGGCTGTGGCCAATGCGACTGCAATCGAAGCATCCAAAGAGGTAGAGGCAGCGATGAAGGTATCCCTGCGGGCAGCTTTGGGCTCAACTACAAATAAACTCAGTAAAGGTCAATTAGATGATCTCACTATAATGATGGAGACCCTTCGAGTTAAAGATGATGAACTTCACCAGTTATTGCAAGATATCCGTGCACGTGATGCAACCATCAGAGAGATTACAGATAAATTACAGGAGACTGCTGAAGCAGCTGAAACTGCTGCTTCTGCAGCTCATTCAATAGATGAGCAGAGAAGATTTTTATCTTCAGAACTTGAACGCCTGAAACAAGATCAGGAAAAACAAATTGAATTTTCATTGCTTAGGTTAAGGGAATCGGAAGAAAAGGCAAAGCTTCTTTCAGAAGAGAGGGAGCATTTACTCAAGGAAAGAGATTCTGCTCTTCAAGAAGCTCAAATGTGGCGTTCTGAACTAGGAAAAGCTAGAGGAAATGCTGTAATTTTAGAAGCAGCCGTTGTGAGGGCGGAAGAGAAAGCAAGAGTTTCAGCAGCAGATGCTGATATGCGAATAAATGATGCTGCGAGTAGACTCGATTCTGCGACAAAAGAAAAGGAAGAACTCGTAGCTCTTGTGGACGCGCTACAGTTGCAAATACGAAGCCAAGACACTAGCACAAAACAAGTCTGCGAGGAGAGGTCGGAGCTGTGCTCCACGTCTTCAAAGCATGTAGACATGGAAGATGATAATGTGGATAAAGCTTGCTTAAGTGATACAGATCCAATACCCATTACTGAGAACATAGTTGATTTGGATGATGATGGAGTCGATATCCCTACAATTGGGGTCACGGAGTGGAATAATCCTCATTCTTCTGAAGTATCTGATGTAAGAGAAGTAACCACTGAACCTGAAGATAACAGCTTGGATATTCCTGTTGATAGCCAACCAGTATCTGAGAATGCTTTCCACGGTTAA
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Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVTLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG
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Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
RI | Chr07 | 2009003 | 2009218 | + | OsNip_07t0138100-02 | OsNip_07t0138100-02,OsNip_07t0138100-01 | All |
Expression
Leaf | Root | Panicle | |
FPKM | 2.013161 | 2.901519 | 5.067056 |
Homologues
Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
---|---|---|---|---|---|
Leaf | Root | Panicle | |||
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04550 | RBH | 1.160444 | 1.760631 | 1.243932 |
Nipponbare | IRGSP 1.0 | RAP-db | Os07g0138100 | RBH | None | None | None |
Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002340 | RBH | 0.474948 | 15.859892 | 7.845955 |
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002340 | RBH | 0.000000 | 3.820024 | 8.313448 |
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002230 | RBH | 1.050642 | 11.214200 | 22.408621 |
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002160 | RBH | 0.366950 | 0.297971 | None |
PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002280 | RBH | 8.599197 | 26.788296 | 28.583700 |
Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0033700 | RBH | 8.267071 | 24.1628515 | 36.304102 |
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002360 | RBH | 0.390155 | 0.510748 | 2.870532 |
Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0037900 | RBH | 10.424915 | 33.638315 | 49.167427 |
LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0002400 | RBH | 0.273091 | 0.164920 | None |
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002410 | RBH | 1.137811 | 15.006988 | None |
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002390 | RBH | 4.266689 | 16.678730 | None |
LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002470 | RBH | 0.914244 | 1.331165 | 1.152919 |
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002360 | RBH | 0.304050 | 11.102455 | None |
N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002380 | RBH | 0.691693 | 9.263522 | 3.532776 |
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002300 | RBH | 2.068637 | 15.090524 | 12.125573 |