Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsGoSa_07g0002390 OGI:07005700 | 16/16 GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) Chr07:1916791-1922348
Gene Symbol OsSWAP70B, SWAP70B, SIP21
DNA seq

gcttggtcgttttgcggatcggcccctccatttcgtcgaattcacgcgcgcggggacagccttccgaccttctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtgagtcctttcactgtctttctcgggatcacgctggataggacgcagagctctgcgagatttgtagggatgtgggtttcgtttcgagcggaatctcgctaaagctgggaatttgtcTtttttttttttttgttgttgcgtggtcgatgagtgcaggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacagtaatttcttgtcttaatttttcttctccatattgcgtaattatccccttagcattttctcctgtttcttgatttctgccaactataacctgctattgttactgtggctgtggctaggatgatgaattaggaggatttatatgttgttcagtatactttaagcttctgtttgttttgcgttttaggagtttctgacattttgctatctgaacttttactttgtcgattctggttttaagtttagctatgaagtaaaatccataatacagtgggagtgacatattgtagaaaaaccataatagagtgggagcgacatattgtagaaaaggtagtaggtgcctgtgttacatttgtaggcagtgtccaagcacaaagtctcatgtatgtcagttggtttgtgaggttattgggatgtttcctgcctctccctgttatctagatgcttgtttgcagatcagaatgcagggatgtaattggcaactttggatttgttttgtttttttgttttggtgtagatgtaaatatgatgtttcttaaaacaaatgccggttccccttttgacttcttgataaattttcgtgtgtttgtagtccattagtcatttatcttctgcttttgcattactgaatgtactatgccagtcttcctatttccccttgataaacttcacactttcaattgtcagctaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagtatgcaaaattacagctccttttgaatatttgaaccatagaaTtttttatcttgtggtcatagtttaacttctcatttaggattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcagtacgatatgcttcattcctagtccattattatatttcagacttacgcgataagcactaaactgactcatgtttcctttggtgcagtggactgccgaaatatgatggatgctgtttctgtatccacacggactaactttttttaaccttacattcttttgcatgggtgatatttattttgggaccctctattttgttttattcaatgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacagtaagtttgtgatctatgattgtcgatgttattatttttaaaccatgtgcacagcattcttcctttattatattagtagtttgctactatggggtatcttacaaatgtttgaaaaaaatttagagtgaattccactttgggctaggtttagttatctatattgcaaattagaccaggcattagtaagccttttcacctagaactaggtattgttacaaattttgcaccttgtaccggtggcccacatgtcagtggatctttctccttcttcctcctcaaaactccctgagcccaactctatccacaccggtgagcttgtctcttcagccagtagcagcaaatagcggctggccagctagccctctcaggcccactccaactcctgttacacgaccggctgcagcatgcagaagtgccagggagcgcacaagacggagaacaatgagattgaataatcgaatcaatgtatgcacatggcctaagaatggttcaggagcacaacccactgcattgtcagctctcctccaattgtcttggacttaattatttccttcaaattgcaaatcgggagcgtcgcaaccctcggcggaggtcgagcgtggctgcagtgccggcagagtttgagcgtgcttagtcttctcatccagccttccctctctcacctcaagtttgtctagagcatctagaataaatggagatgaggcaggatagatcaggtgtgcgtcggcaggagtcacttgagaacagcggcagtggaagaactggcccaaagtgaaacattaatgtagacttccctggtccaaagtgaaaacttagtcctatccctagtccaagttgcaacttaggtaaaaaatagtggtccaatatgaaatttactcaaaaatttaatggtttaattgcttaactaccgtaatgatttattatgatatatttgaagcaaaatgatattttgtacatcttttgtaagacttatacaataagatacattgttgcgagaaactgacatgttaatatcaatttaagctaacacgggtgcaacaccagcctgcagttttgggtattgaggtttggtgatctataagtacctaaaaacgttaaaactcggtacttttccaacaaatttcatattctgatgtttgcattagatcagttgccgcgtatgtatttgttaaaagattacaatgcttgagggcttgtgcttgggaggcacgttgactcgtggaggttagagcctgggaaaatcgagctgtttcgttattccaaataagtgcttgtggtgctattcatagaggcagaggctttcttgttcactgtttgtatctatactgctatcagttgtccacccgacaactaagctaatactgctatcagttgtccacccgacaactaagctaatgggctataagctggctaaaggctttcatttggtgctttgtgttattatttctctattgtttcagctgtgaatcgtgaaacctagtaaaatttcttgttttacctgcagtgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggAaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggtaagctcttcttcgtactacgtactaaggaatacctgaatcaaaacttagtagttgtgaaggaaatcactactgatgaatgtaggcttactgttagacccttaaaagtaaatatccttgctgtagtcaattaatattatattcaagtgttacactatgttcgcaaactaagttattggtacttaatttatcagaccagtgagtaatataaaaAGaacatctgtatctattatgaagtgtcgaaatttgcaactcaagtagtctgatagaacttcacaaactggcatcaacagcagctctgataaactgaatgtttactttggtacattcaaacctgttcgtccacttggcttatgtttgttcctgttcttttggctcttgatgaaaattttccaaacaccgttatgagctagtaacaagatagaaagattcctattaatttatttaaaaaatgcttctcaagttatagtttgattgataaaaatatgcatttgcatttgcttctcggaagcagtctagtatttggttctcaggatctttgtctgaacaatgtccttgtatagtaattatttttaatactaatgactgcttgagaaaaaaagaactacctatacattttgaagatgccttctttggtattagttgtgtatcactaatgtgagacttctgtttttggatactgaagtttgttttttgtactgtatatctataatttacaggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttagggtaatagccattttagttaatctatatactatgcattttattatatataaatatattttattcatgcatttacatggttatacacctgagtatcatgatcccacctcatgttaaatctgtgaatgtgcatttttaaaggtgaactgaattttgtattgacagttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaaggttctgcatgtatattctactatttaatttcctgttccttcaatcattgaaaagcatcataagattcttctaaaaaaacttgattggagagttaagaaggttttggaatatcttctctttgcagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaacctggcttgtttctattcttaaccccgttggcttgtattctatgttctcattttagttcattgcaaacattcatatattcaaattaaagctcgctatgagctcatggactttagttccacaacgtgttcactgtatccaagtggaataaaacagtgcaattgtgggtgtgtacatctgaaagtccacgtttgtcaacgtgattcagggtatcaggatagtgctctgaactaaattcacatgagctgcataatgcatcctgttcgagtattaattagtgacatctattactctttgcttgtatcatacggagtatatataaacaagtgatgaatgaacatcttgtcttcctagttttctttaatAaaaaaaggaagccgtcgttctcgtgc

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CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggAaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

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Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0002390 OsGoSa_07g0002390.03 Chr07 1916791 1922348 + NAM
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggAaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

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Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0002390 OsGoSa_07g0002390.01 Chr07 1916791 1922348 + NAM
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggAaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

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Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

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Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0002390 OsGoSa_07g0002390.02 Chr07 1916791 1922348 + NAM
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctgtatccacacggactaa

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Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFCIHTD

Gene Transcript Chromosome Start End Strand Source
OsGoSa_07g0002390 OsGoSa_07g0002390.04 Chr07 1916811 1922129 + IsoSeq
CDS seq

gcccctccatttcgtcgaattcacgcgcgcggggacagccttccgaccttctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatg

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Protein seq

APPFRRIHARGDSLPTFSPLIRRGHGVEREQHGGGRDGEQLGASEAAALVHLQPPPPSGPSPEAIRYTKKM

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr07 1918168 1918383 + OsGoSa_07g0002390.02,OsGoSa_07g0002390.04 OsGoSa_07g0002390.02,OsGoSa_07g0002390.04,OsGoSa_07g0002390.01 All
RI Chr07 1920836 1921518 + OsGoSa_07g0002390.02 OsGoSa_07g0002390.03,OsGoSa_07g0002390.02,OsGoSa_07g0002390.04,OsGoSa_07g0002390.01 All
SE Chr07 1918081 1919888 + OsGoSa_07g0002390.02,OsGoSa_07g0002390.04 OsGoSa_07g0002390.03,OsGoSa_07g0002390.02,OsGoSa_07g0002390.04 All

Expression

Leaf Root Panicle
FPKM 4.266689 16.678730 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0138100 RBH 2.013161 2.901519 5.067056
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g04550 RBH 1.160444 1.760631 1.243932
Nipponbare | IRGSP 1.0 | RAP-db Os07g0138100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0002340 RBH 0.474948 15.859892 7.845955
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0002340 RBH 0.000000 3.820024 8.313448
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0002230 RBH 1.050642 11.214200 22.408621
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0002160 RBH 0.366950 0.297971 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0002280 RBH 8.599197 26.788296 28.583700
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0033700 RBH 8.267071 24.1628515 36.304102
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0002360 RBH 0.390155 0.510748 2.870532
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0037900 RBH 10.424915 33.638315 49.167427
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0002400 RBH 0.273091 0.164920 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0002410 RBH 1.137811 15.006988 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) NA NA NA NA NA
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0002470 RBH 0.914244 1.331165 1.152919
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0002360 RBH 0.304050 11.102455 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G002380 RBH 0.691693 9.263522 3.532776
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0002300 RBH 2.068637 15.090524 12.125573
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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