Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0002400 | OGI:07005700 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:2299758-2305316 | ||||||||
| Gene Symbol | OsSWAP70B, SWAP70B, SIP21 | ||||||||||
| DNA seq | agcttggtcgttttgcggatcggcccctccatttcgtcgaattcacgcgcgcggggacagccttccgaccttctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtgagtcctttcactgtctttctcgggatcacgctggataggacgcagagctctgcgagatttgtagggatgtgggtttcgtttcgagcggaatctcgctaaagctgggaatttgtcttttttttttttttgttgttgcgtggtcgatgagtgcaggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacagtaatttcttgtcttaatttttcttctccatattgcgtaattatccccttagcattttctcctgtttcttgatttctgccaactataacctgctattgttactgtggctgtggctaggatgatgaattaggaggatttatatgttgttcagtatactttaagcttctgtttgttttgcgttttaggagtttctgacattttgctatctgaacttttactttgtcgattctggttttaagtttagctatgaagtaaaatccataatacagtgggagtgacatattgtagaaaaaccataatagagtgggagcgacatattgtagaaaaggtagtaggtgcctgtgttacatttgtaggcagtgtccaagcacaaagtctcatgtatgtcagttggtttgtgaggttattgggatgtttcctgcctctccctgttatctagatgcttgtttgcagatcagaatgcagggatgtaattggcaactttggatttgttttgtttttttgttttggtgtagatgtaaatatgatgtttcttaaaacaaatgccggttccccttttgacttcttgataaattttcgtgtgtttgtagtccattagtcatttatcttctgcttttgcattactgaatgtactatgccagtcttcctatttccccttgataaacttcacactttcaattgtcagctaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagtatgcaaaattacagctccttttgaatatttgaaccatagaattttttatcttgtggtcatagtttaacttctcatttaggattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcagtacgatatgcttcattcctagtccattattatatttcagacttacgcgataagcactaaactgactcatgtttcctttggtgcagtggactgccgaaatatgatggatgctgtttctgtatccacacggactaactttttttaaccttacattcttttgcatgggtgatatttattttgggaccctctattttgttttattcaatgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacagtaagtttgtgatctatgattgtcgatgttattatttttaaaccatgtgcacagcattcttcctttattatattagtagtttgctactatggggtatcttacaaatgtttgaaaaaaatttagagtgaattccactttgggctaggtttagttatctatattgcaaattagaccaggcattagtaagccttttcacctagaactaggtattgttacaaattttgcaccttgtaccggtggcccacatgtcagtggatctttctccttcttcctcctcaaaactccctgagcccaactctatccacaccggtgagcttgtctcttcagccagtagcagcaaatagcggctggccagctagccctctcaggcccactccaactcctgttacacgaccggctgcagcatgcagaagtgccagggagcgcacaagacggagaacaatgagattgaataatcgaatcaatgtatgcacatggcctaagaatggttcaggagcacaacccactgcattgtcagctctcctccaattgtcttggacttaattatttccttcaaattgcaaatcgggagcgtcgcaaccctcggcggaggtcgagcgtggctgcagtgccggcagagtttgagcgtgcttagtcttctcatccagccttccctctctcacctcaagtttgtctagagcatctagaataaatggagatgaggcaggatagatcaggtgtgcgtcggcaggagtcacttgagaacagcggcagtggaagaactggcccaaagtgaaacattaatgtagacttccctggtccaaagtgaaaacttagtcctatccctagtccaagttgcaacttaggtaaaaaatagtggtccaatatgaaatttactcaaaaatttaatggtttaattgcttaactaccgtaatgatttattatgatatatttgaagcaaaatgatattttgtacatcttttgtaagacttatacaataagatacattgttgcgagaaactgacatgttaatatcaatttaagctaacacgggtgcaacaccagcctgcagttttgggtattgaggtttggtgatctataagtacctaaaaacgttaaaactcggtacttttccaacaaatttcatattctgatgtttgcattagatcagttgccgcgtatgtatttgttaaaagattacaatgcttgagggcttgtgcttgggaggcacgttgactcgtggaggttagagcctgggaaaatcgagctgtttcgttattccaaataagtgcttgtggtgctattcatagaggcagaggctttcttgttcactgtttgtatctatactgctatcagttgtccacccgacaactaagctaatactgctatcagttgtccacccgacaactaagctaatgggctataagctggctaaaggctttcatttggtgctttgtgttattatttctctattgtttcagctgtgaatcgtgaaacctagtaaaatttcttgttttacctgcagtgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggtaagctcttcttcgtactacgtactaaggaatacctgaatcaaaacttagtagttgtgaaggaaatcactactgatgaatgtaggcttactgttagacccttaaaagtaaatatccttgctgtagtcaattaatattatattcaagtgttacactatgttcgcaaactaagttattggtacttaatttatcagaccagtgagtaatataaaaagaacatctgtatctattatgaagtgtcgaaatttgcaactcaagtagtctgatagaacttcacaaactggcatcaacagcagctctgataaactgaatgtttactttggtacattcaaacctgttcgtccacttggcttatgtttgttcctgttcttttggctcttgatgaaaattttccaaacaccgttatgagctagtaacaagatagaaagattcctattaatttatttaaaaaatgcttctcaagttatagtttgattgataaaaatatgcatttgcatttgcttctcggaagcagtctagtatttggttctcaggatctttgtctgaacaatgtccttgtatagtaattatttttaatactaatgactgcttgagaaaaaaagaactacctatacattttgaagatgccttctttggtattagttgtgtatcactaatgtgagacttctgtttttggatactgaagtttgttttttgtactgtatatctataatttacaggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttagggtaatagccattttagttaatctatatactatgcattttattatatataaatatattttattcatgcatttacatggttatacacctgagtatcatgatcccacctcatgttaaatctgtgaatgtgcatttttaaaggtgaactgaattttgtattgacagttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaaggttctgcatgtatattctactatttaatttcctgttccttcaatcattgaaaagcatcataagattcttctaaaaaaacttgattggagagttaagaaggttttggaatatcttctctttgcagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaacctggcttgtttctattcttaaccccgttggcttgtattctatgttctcattttagttcattgcaaacattcatatattcaaattaaagctcgctatgagctcatggactttagttccacaacgtgttcactgtatccaagtggaataaaacagtgcaattgtgggtgtgtacatctgaaagtccacgtttgtcaacgtgattcagggtatcaggatagtgctctgaactaaattcacatgagctgcataatgcatcctgttcgagtattaattagtgacatctattactctttgcttgtatcatacggagtatatataaacaagtgatgaatgaacatcttgtcttcctagttttctttaataaaaaaaggaagccgtcgttctcgtgc
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| CDS seq | atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa
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| Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002400 | OsLima_07g0002400.01 | Chr07 | 2299758 | 2305316 | + | NAM | ||
| CDS seq | atgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa
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| Protein seq | MTNVLDIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002400 | OsLima_07g0002400.02 | Chr07 | 2299759 | 2305316 | + | NAM | ||
| CDS seq | atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctgtatccacacggactaa
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| Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFCIHTD |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0002400 | OsLima_07g0002400.03 | Chr07 | 2299779 | 2305316 | + | NAM | ||
| CDS seq | atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgagtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgatgttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa
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| Protein seq | MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVMLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr07 | 2301136 | 2301351 | + | OsLima_07g0002400.01,OsLima_07g0002400.02 | OsLima_07g0002400.03,OsLima_07g0002400.02,OsLima_07g0002400.01 | All |
| RI | Chr07 | 2303804 | 2304486 | + | OsLima_07g0002400.02 | OsLima_07g0002400.03,OsLima_07g0002400.02,OsLima_07g0002400.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.273091 | 0.164920 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0138100 | RBH | 2.013161 | 2.901519 | 5.067056 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g04550 | RBH | 1.160444 | 1.760631 | 1.243932 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0138100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0002340 | RBH | 0.474948 | 15.859892 | 7.845955 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0002340 | RBH | 0.000000 | 3.820024 | 8.313448 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0002230 | RBH | 1.050642 | 11.214200 | 22.408621 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0002160 | RBH | 0.366950 | 0.297971 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0002280 | RBH | 8.599197 | 26.788296 | 28.583700 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0033700 | RBH | 8.267071 | 24.1628515 | 36.304102 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0002360 | RBH | 0.390155 | 0.510748 | 2.870532 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0037900 | RBH | 10.424915 | 33.638315 | 49.167427 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0002410 | RBH | 1.137811 | 15.006988 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0002390 | RBH | 4.266689 | 16.678730 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0002470 | RBH | 0.914244 | 1.331165 | 1.152919 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0002360 | RBH | 0.304050 | 11.102455 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G002380 | RBH | 0.691693 | 9.263522 | 3.532776 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0002300 | RBH | 2.068637 | 15.090524 | 12.125573 |
