Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsNaBo_07g0002300 OGI:07005700 | 16/16 NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) Chr07:2164289-2169808
Gene Symbol OsSWAP70B, SWAP70B, SIP21
DNA seq

gcttggtcgttttgcggatcggcccctccgtttcgtcgaattcacgcgcgcggggacagccttccgaccttctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtgagtcctttcactgtctttctcgggatcacgctggataggacgcagagtctgcgagatttgtagggatgtgggtttcgtttcgagcggaatctcgctaaagctgggaatttgtctttttttttttttgttgttgcgtggtcgatgagtgcaggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacagtaatttcttgtcttaatttttcttctccatattgcgtaattatccccttagcattttctcctgtttcttgatttctgccaactataacctgctattgttactgtggctgtggctaggatgatgaattaggaggatttatatgttgttcagtatactttaagcttctgtttgttttgcgttttaggagtttctgacattttgctatctgaacttttactttgtcgattctggttttaagtttagctatgaagtaaaatccataatacagtgggagtgacatattgtagaaaaaccataatagagtgggagcgacatattgtagaaaaggtagtaggtgcctgtgttacatttgtaggcagtgtccaagcacaaagtctcatgtatgtcagttggtttgtgaggttatcgggatgtttcctgcctctccctgttatctagatgcttgtttgcagatcagaatgcagggatgtaattggcaactttggatttgttttgtttttttgttttggtgtagatgtaaatatgatgtttcttaaaacaaatgccggttccccttttgacttcttgataaattttcgtgtgtttgtagtccattagtcatttatcttctgcttttgcattactgaatgtactatgccagtcttcctatttccccttgataaacttcacactttcaattgtcagctaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagtatgcaaaattacagctccttttgaatatttgaaccatagaattttttatcttgtggtcatagtttaacttctcatttaggattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgaggttgtcgccaatgaactttcagtacgatatgcttcattcctagtccattattatatttcagacttacgcgataagcactaaactgactcatgtttcctttggtgcagtggactgccgaaatatgatggatgctgtttctgtatccacacggactaactttttttaaccttacattcttttgcatgggtgatatttattttgggaccctctattttgttttattcaatgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacagtaagcttgtgatctatgattgtcgatgttattatttttaaaccatgtgcacagcattcttcctttattatattagtagtttgctactatggggtatcttacaaatgtttgaaaaaattttagagtgaattccactttgggctaggtttagttatctatatttcaaattagaccaggcattagtaagccttttcacctagaactaggtattgttacaaattttgcaccttgtaccggtggcccacatgtcagtggatctttctccttcttcctcctcaaaactccctgagcccaactctatccacaccggtgagcttgtctcttcagccagtagcagcaaatagtggctggccagctagccctctcaggcccactccaactcctgttacacgaccggctgcagcatgcagaagtgccagggagcgcacaagacggagaacaacgagattgaataatcgaatcaatgtatgcacatggcctaagaatggttcaggagcacaacccactgcattgtcagctctcctccaattgtcttggacttaattatttccttcaaattgcaaatcgggagcgtcgcaaccctcggcggaggtcgagtgtggctgcagtgccggcagagtttgagcgtgcttagtcttctcatccagccttccctctctcacctcaagtttgtctagagcatctagaataaatggagatgaggcaggatagatcaggtgtgcgtcggcaggagtcacttgagaacagcggcagtggaagaactggcccaaagtgaaacattaatgtagacttccctggtccaaagtgaaaacttagtcctatccctagtccaagttgcaacttaggtaaaaaatagtggtccaatatgaaatttactcaaaaatttaatggtttaattgcttaactaccgtaatgatttattatgatatatttgaagcaaaatgatattttgtacattttttgtaagacttatacaataagatacattgttgccagaaactgacatgttaatatcaatttaagctaacacgggtgcaacaccagcctgcagttttgggtattgaggtttggtgatctataagtacctcaaaacgttaaaactcggtacttttccaacaaatttcatattctgatgtttgcattagatcagttgccgcgtatgtatttgttaaaagattacaatgcttgagggcttgtgcttgggaggcacgttgactcgtggaggttagagcctgggaaaatcgagctgtttcattattccaaataagtgcttgtggtgctattcatagaggcagaggctttcttgttcactgtttgtatctatactgctatcagttgtccacccgacaactaagctaatgggctataagctggctaaaggctttcatttggtgctttgtgttattatttctctattgtttcagctgtgaatcgtgaaacctagtaaaatttcttgttttacctgcagtgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggtaagctcttcttcgtactacgtactaaggaatacctgaatcaaaacttagtagttgtgaaggaaatcactactgatgaatgtaggcttactgttagacccttaaaagtaaatatccttgctgtagtcaattaatattatattcaagtgttacactatgttcgcaaactaagttattggtacttaatttatcagaccagtgagtaatataaaaagaacatctgtatctattatgaagtatcgaaatttgcaactcaagtagtctgatagaacttcacaaactggcatcaacagcagctctgataaactgaatgtttactttggtacattcaaacctgttcatccacttggcttatgtttgttcctgttcttttggttcttgatgaaaattttccaaacaccgttatgagctagtaacaagatagaaagattcctattaatttatttaaaaaatgcttctcaagttatagtttgattgataaaaatatgcatttgcatttgcttctcggaagcagtctagtatttggttctcaggatctttgtctgaacaatgtccttgtatagtaattatttttaatactaatgactgcttgagaaaaaaagaactacctatacattttgaagatgccttctttggtattagttgtgtatcactaatgtgagacttctgtttttggatactgaagtttgttttttatactgtatatctataatttacaggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttagggtaatagccattttagttaatctatatactatgcattttattatatataaatatattttattcatgcatttacatggttatacacctgagtatcatgatcccacctcatgttaaatctgtgaatgtgcatttttaaaggtgaactgaattttgtattgacagttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaaggttctgcatgtatattctactatttaatttcctgttccttcaatcattgaaaagcatcataagattcttctaaaaaaacttgattggagagttaagaaggttttggaatatcttctctttgcagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaacctggcttgtttctattcttaaccccgttggcttgtattctatgttctcattttagttcattgcaaacattcatatattcaaattaaagctcgctatgagctcatggactttagttccacaacgtgttcactgtatcgaagtggaataaaacagtgcaattgtgggtgtgtacatctgaaagtccacgtttgtcaacgtgattcagggtatcaggatagtgctctgaactaaattcacatgagctgcataatgcatcctgttcgagtattaattagtgacatctattactctttgcttgtatcatacggagtatatataaacaagtgatgaatgaacatcttgtcttcctagttttctttaataaaaaaaggaagccgtcgttctcgtgc

More
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgaggttgtcgccaatgaactttcatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

More
Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVRLSPMNFHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

Function -

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsNaBo_07g0002300 OsNaBo_07g0002300.02 Chr07 2164289 2169808 + NAM
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgaggttgtcgccaatgaactttcatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

More
Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVRLSPMNFHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

More
Gene Transcript Chromosome Start End Strand Source
OsNaBo_07g0002300 OsNaBo_07g0002300.03 Chr07 2164289 2169808 + NAM
CDS seq

atgactaatgttctagatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttaggttaagggaatcggaagaaaaggcaaagcttctttcagaagagagggagcatttactcaaggaaagagattctgctcttcaagaagctcaaatgtggcgttctgaactaggaaaagctagaggaaatgctgtaattttagaagcagccgttgtgagggcggaagagaaagcaagagtttcagcagcagatgctgatatgcgaataaatgatgctgcgagtagactcgattctgcgacaaaagaaaaggaagaactcgtagctcttgtggacgcgctacagttgcaaatacgaagccaagacactagcacaaaacaagtctgcgaggagaggtcggagctgtgctccacgtcttcaaagcatgtagacatggaagatgataatgtggataaagcttgcttaagtgatacagatccaatacccattactgagaacatagttgatttggatgatgatggagtcgatatccctacaattggggtcacggagtggaataatcctcattcttctgaagtatctgatgtaagagaagtaaccactgaacctgaagataacagcttggatattcctgttgatagccaaccagtatctgagaatgctttccacggttaa

More
Protein seq

MTNVLDIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRLRESEEKAKLLSEEREHLLKERDSALQEAQMWRSELGKARGNAVILEAAVVRAEEKARVSAADADMRINDAASRLDSATKEKEELVALVDALQLQIRSQDTSTKQVCEERSELCSTSSKHVDMEDDNVDKACLSDTDPIPITENIVDLDDDGVDIPTIGVTEWNNPHSSEVSDVREVTTEPEDNSLDIPVDSQPVSENAFHG

More
Gene Transcript Chromosome Start End Strand Source
OsNaBo_07g0002300 OsNaBo_07g0002300.01 Chr07 2164289 2169808 + NAM
CDS seq

atggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatggaatgaacggtgggttatacttgatcctgcaactggaaagatggaatacaagattcgtagaagtgatgcagctgtgaggggaataatagtgtttgattcaacaagcactgtgaggttgtcgccaatgaactttcatggactgccgaaatatgatggatgctgtttctatattggaaccccacagaaaaaggaatattttctttgtgcagaaactcctagtgctgcaagagcttgggtgtccactttacatgcttctcagttggtgctacaagctcacaaagaagcagtgaattcgttgggtggaaatggtcctaccaaattgggaaaagttgctacagttgtggctgtggccaatgcgactgcaatcgaagcatccaaagaggtagaggcagcgatgaaggtatccctgcgggcagctttgggctcaactacaaataaactcagtaaaggtcaattagatgatctcactataatgatggagacccttcgagttaaagatgatgaacttcaccagttattgcaagatatccgtgcacgtgatgcaaccatcagagagattacagataaattacaggagactgctgaagcagctgaaactgctgcttctgcagctcattcaatagatgagcagagaagatttttatcttcagaacttgaacgcctgaaacaagatcaggaaaaacaaattgaattttcattgcttagggtaatagccattttagttaatctatatactatgcattttattatatataaatatattttattcatgcatttacatggttatacacctgagtatcatgatcccacctcatgttaa

More
Protein seq

MASSGSSTVVGEMESSLERVRRQLSSTSSRHLLQGPLLKRSDTLRKWNERWVILDPATGKMEYKIRRSDAAVRGIIVFDSTSTVRLSPMNFHGLPKYDGCCFYIGTPQKKEYFLCAETPSAARAWVSTLHASQLVLQAHKEAVNSLGGNGPTKLGKVATVVAVANATAIEASKEVEAAMKVSLRAALGSTTNKLSKGQLDDLTIMMETLRVKDDELHQLLQDIRARDATIREITDKLQETAEAAETAASAAHSIDEQRRFLSSELERLKQDQEKQIEFSLLRVIAILVNLYTMHFIIYKYILFMHLHGYTPEYHDPTSC

More
Gene Transcript Chromosome Start End Strand Source
OsNaBo_07g0002300 OsNaBo_07g0002300.04 Chr07 2164310 2169591 + IsoSeq
CDS seq

gcccctccgtttcgtcgaattcacgcgcgcggggacagccttccgaccttctcccctctgatccggcgcggccatggcgtcgagcgggagcagcacggtggtgggagagatggagagcagcttggagcgggtgaggcggcagctctcgtccacctccagccgccacctccttcagggccctctcctgaagcgatccgatacactaagaaaatg

More
Protein seq

APPFRRIHARGDSLPTFSPLIRRGHGVEREQHGGGRDGEQLGAGEAAALVHLQPPPPSGPSPEAIRYTKKM

Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
RI Chr07 2168296 2168978 + OsNaBo_07g0002300.01 OsNaBo_07g0002300.02,OsNaBo_07g0002300.01,OsNaBo_07g0002300.04,OsNaBo_07g0002300.03 All
RI Chr07 2165664 2165879 + OsNaBo_07g0002300.03 OsNaBo_07g0002300.04,OsNaBo_07g0002300.01,OsNaBo_07g0002300.03 All
SE Chr07 2165577 2167348 + OsNaBo_07g0002300.03 OsNaBo_07g0002300.02,OsNaBo_07g0002300.03 All

Expression

Leaf Root Panicle
FPKM 2.068637 15.090524 12.125573

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0138100 RBH 2.013161 2.901519 5.067056
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g04550 RBH 1.160444 1.760631 1.243932
Nipponbare | IRGSP 1.0 | RAP-db Os07g0138100 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0002340 RBH 0.474948 15.859892 7.845955
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0002340 RBH 0.000000 3.820024 8.313448
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0002230 RBH 1.050642 11.214200 22.408621
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0002160 RBH 0.366950 0.297971 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0002280 RBH 8.599197 26.788296 28.583700
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0033700 RBH 8.267071 24.1628515 36.304102
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0002360 RBH 0.390155 0.510748 2.870532
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0037900 RBH 10.424915 33.638315 49.167427
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0002400 RBH 0.273091 0.164920 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0002410 RBH 1.137811 15.006988 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0002390 RBH 4.266689 16.678730 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_07g0002470 RBH 0.914244 1.331165 1.152919
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) OsLaMu_07g0002360 RBH 0.304050 11.102455 None
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G002380 RBH 0.691693 9.263522 3.532776
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) NA NA NA NA NA
Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.