Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_07g0108900 | OGI:07001220 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr07:471210-477655 | ||||||||
| Gene Symbol | RAP1A, OsMADS15, FDRMADS3, RMADS215, MADS15, DEP | ||||||||||
| DNA seq | AGCGTATAAACACAATCATAAATTAATTAACCATCACGGGAGCATGGCATGCAAATATATTTATATGCACACAATTGCATGCATATATATCAGTAGGAAGCACTAGGTACGTGCTGATGATTACACAAAGACACATCCTGATCCTTGCTCATAATTAATTTCTTGCAAATCATATGTAGCCTGTAGGGTAGGGGGCAGCAGGCAAACACATATATAAGAATAGCTTAATCGCTAGGTTTGTTTTTTTGAGATCAATTTCATTTTAGGAGAATCATATATATTATCGCTAGGATCGATACCAATGACTTCAATTCATTCAAGGTTGCTCCCATGATTCACGGTGCATACGGCAGCTGTTTGGCCGACGACGACGACGATGATCATCTTAAGCATTGAGGTGGCTCAGCATCCATGGCGGAAGACCTCCGATGCGGAGTTGCACCTGGCCCTGCGCCGCCACCGCCGCCGCCGCCGCCGCATCATTTCTCTCGCCCATCATCACCGGCGGGTAGCTACTATGCACAGATGTGCATAATTATATACATGCAGTTAATTAATTAGAGACTTAGAACTTAACAAGGGTGTGATCGATCTTAATTAGTGCAGTAACAGATTAATTTATAACTGAATAGCAACTGATGAGACATGAATGCAGACATATACGTACCAGATATTTTGTGGTGGAAGAAGTGCCTGCTGATCCCTCAGCATGGAGGAGGAGGAGGAGCTTGTCTGGGCTTGGGGTTGGGCTTGGGCCTGGGCCTGGACCTGGGTTTGGTCCCACTGCCCTACTTGCTGCTGGCCCCTCACATTCTTCTGCCTCTCCACCAGCTGCATGCGCACACTACAAACATCACGATTTTTTTCTAAGAGGCACAAACCGACCACCAAGGAAACCACATAAACCGCTAGTAAGGGACAAATTTATCGAGATGTATTTGATAGCGCAATGATAAAAGATGTGTGGTTTTAACCCAAGGTCATATGTTCAATTGCCAACACGCTAAAAAAATAGCCGTCAAGTCTAGAAGGCAAAGAAAATTACTTCTCATTTGCGGTCAACTGTGGGGGAAAAAATTATTGGCGATATGATCCACCCAACAAGTAAACTACAGCAATTTCAAACTTTCGAGTGCGCATATGAATTAATTATCTCTAATGCCTCCATTGACAAAACTAGTAATTAAACCCATGGATAGATTGGAAAATTGTCAACAAGATAAATCAATTGATCAAAACCAATGCGCATGAATTAATTATGTTTAGTGCCTCCATTGGCTAGTCAAGCAGAATGAATTAATTAATATAAGCAGCAGTAAATACTATATTTTCGACAACTTACTTCCTTCTGCAGAGCCTTGTTCTCCTCCTGCAGTGACCTCTCCTGCACTCATGCAAGAAAACTGCACTATCAGTTGAGACTAACCAAGAGTAAACTATAACTAACTACTAGCTAACAACGGTTTGCATGCACGATTCATATATACATGCATACACAGTAGTGCAGTTCAATTGGTCACCTTTTTCTGCAGCTCGGAAATGGACTCAAGCATAAGGTGGCTCTGCAAACACAAACATATTGTTCTAGTTAGTCCGTCATATTTGGTAATTGTACTCCAGAATGTGCTAAAAAGTTTATATTTGGTAATTGTTCCTCCAGAATGTGCTGAAAATATTTACTCATATATTTTCTCAAAAAGGAAAAAAAAAAGAACATTTGTTTCAAAGTAGCAGTGACAACAAGACATTTGGATATATATTTATGTAACTCAGGCATGCGCATGCATGAATTATTTCAATTCAGTCCAGTTTGAAACAGAACATGCTAAATATATTACTACGTTTCTTTTAATAATTTGCTCCTTTTTTTCTGTACATTTGGTGTGTAGAGGTCGGGAGTTCAAATAAAAAGATTCCACTATCCAAAAAAATACTACCTTTCTTGATATTATGTGCTTCAATGAACTCTCCAGCTGCTGCTCTAGCTGTTGGAGTTCTTTGAGATTCAGGGATTCTAGATCCTCTCCCATGAGGTGTCTACACAAGATACATAAGTTAGTTTCACGTCATCTTCAGCAGTCAATACCGGAAGTTCTCTTTTAAATTGGTTTAAAAATAATAATTAGTGCAATTAGTTCGAAATTTATTTAACATTATTATAGAAATTGGATATATATATCGATTACTTGTGACATTTTTGTATGGTCTCAATCTTTGCCTTAAGTTTCCTGTATTCATGGCACCAATTTCCCTGTACAAAAAAAAACTCTTTGTCAGTATAAACCAATATATATGGTTGGTTGATGTTTTCTGTGAGCCAACCATTACTGTCAAAATTAGAGAACTATTACTAAATTACTGTAAACATAAACAGATGATGAAACGATGGAAATAAAATATTATAAAGAACCTAAATGCATCCTCATTTAGTGGAGTATATAGAAAATCCTCAAATGCAACCGTGTATGTGAATATTTGATAAAATTAAGGGAGTTATAGCTCCTTAAATTAATTTATTAGTAGATGAGAACTCCTTTGCTGTCTTGATAAATGTAGAAATTCAACAAATGATAAAAAGAGGCATGTTTAATTTTTTTAAATGTACATGAACTTTTCAATTAAGGTAGAGAACTAATTAACTTACTCCTAGTGCTTATTGATGCATTTATTCGCATTATCCGCACACTAATGCCGTGATATATGCAACAACTTTGCCAAACCACACACATTTTTTTCTTTACTCCAAGAAGGTGGAAGTGGTAAAGGAACAAATATTTGCACTTATCATCATTTTTTAACACTTACCAAAGTTTTACTCATCAAACAGTACTGAAAACAAATACCATGAGTACTTCTGGATGCAGTGCATGTTGTCAACTGGGGAAGAGTTATCTTGAAAAAAAAAATGAAGAAACATTTCATCGATCACAGTCCATATGCATGTTTATGATTACAGTTTTACTTAGTATATATAAATATGCACTTAGAATATCGAAACATTTGGTCTCCAACCGGATTCTACCAGCGCTATTATTGTATTGTGCATGTTTCTATGTTTTCTTAAGCATATTATATTGCTTCATGAAACACAAAAGAAACCACTCAAACGGAGTATGGATAAAAAAATAGAATAGTAGCATTTAGTTAAAAACTAGTGCAATTTTAATTTATTTACAGAAGAATTAGTATAGATCATAACATTAATGATAGGATGCTGATCGCAAGCTGGCGATCGACTTCCATGCATGTGGCCCATTAATTGTATGACCATAATAAATAAAATTTGAGGGGATTAAATGAAGGGAATGAGGACTCTCCTGCATGATATCCCAATAAGTAGAAATTTTAAGAAATATGCCAGAGTGCAAAAGACACGAGGTTTGAAGTTAAAAAGTATAAAACAGAAGGTTACCAACATCTAGTTTTGGCAAGTAGAACGATAGAATTCAGAAAAACTGCTTTGTTAACATGTGATTTAAAAGGCCACAAGGAAATGATATGATTGAAATGCTAATGCAATAGAAAAGGAACAATAATATTCCCTTCATGTAAAAGTTATATATCATACAACCTACTGTGTTTTACCTCACTCTCGGATTCAGCTGAAATAAGAGCCTTTTCAGCATATGAATAGCGCTCATAACGTTCAAGGATTTTGTCCATCCTGCAGGGAAAACCATCATGAGCAGAATCTGAAATTAGTCCACTATATATGTAAATACTTTGCATTCAGCATTCTCATGACAACGTTTAGGAAGTATATTTAAATGGTCTGAAGCTAGGAATGCCTACCAAACTATTCCAAGCAATTAAAGCTGAAATGTGGATTAAGACTACTAATATATAGATATCGGCATTTGTATGCACAAGAGCTCTTTTGCTGTCTAAACACTCGACACAGCCAAATAAAAAGCATGCACATGAAAACACTCGGTTATATTCAAGTGCATGCATGAATTATCTTATCTTCAAGAAAACAGGGACGTTGTATGGGACTGTGTGACGAAAAAAAAGCTCCTCATGACACATGTGATATGAGGGTGTGAACATAAGAATTCACCCATTCCAAAATTTGAAGTGGGTTGCTTAGGAAAATTTAGCAAAAAAAATAATCAAGATTATATATAACAGCACCGTTAAACAGCCATCAGCAAGGACCCTAACAAAACCAGTGGAACTGTTCAAAACAGACTATATATAATAGCACCATTGAATTACTGGGTGATGATTTGCACATCTTGATAATTGCAAGTAATTTAACACCTTTATTTTAGACCAACCTCCCCATAATCCTATAGCCGTACGTATAGGTGTTTACAGACTCCTTGATGATCAGTAAGATTGTGAGACTACAGTTTAATTATATCACGAGGATCCTGAAGAACTTGACTTCTTCTGTTTTACTGGAACACCCTTAGATCTATCTCAGGAAGATCTATAATTAAGATCAAATAAGTGAAGATTTCTGAGCTAGAAATGAAGCGCCTTAGACTGATCTTGACGCTGGGGAGTGTGCAGGGCACTGTTCCAGTACAACACAGACGACCGTAAAAGTCCTCTTTACCTAGACGTCAGAAACGCATTTTGAGCAAAAGCTAGCAAGCAAGATAAATTATTTTTCTGAAACACGCGCGATGGCTAGCTATTATGTGATTTTACAGAGAGCAAGATTATTTTTTGAAGTCATCGTGTCACAGGATGTTTAAGTACATCTCTTGATCTAACTCCAGAATAATTAGTGAATTATCCCATCATTATTAATTAATCAGCTGAGCAGAAAAGGAAATATCTCGCGTACGTGGTCGTTCTAGACCAAAACACACAAGCAACTGGCCATGAAGTTAAACCAAAAGAGATAGATCAAATTTGATCTAGGGCTCTTTAAAGAGATGCTTAACGTGAATAATACCAAATAAAGATTCATCATAAGAAGAGGCAGAAACATAGAAGAGGATGAGAGAGAAGGGAAGAGGAAAGGCCAGATCTGTCCATCTCCAACGTTTTGGTATCTGAGGAAGATGATGCATAAGCAAGAAAAACAGCTGTTTGAGTAATTTTAAGCCAAGCCTCACAAGAAGAGGGGAATTAATTACTTGAGAAACAGAAGATGTTTTGCATGCATCAGCTGTGACTGTGAACAATAGGGAGGAGTGCATGACACTGGTGGTGGACTCCTCGTAATTCGTGTGATATATTCTTTAATTAATTTCTTGACAGGTGGAGAACAAAGGCACGCGCATGAGATTAATTTGAGAGGAAGATGTGACGAAATCAACCCAAATAAAAGTCAGGAAGGAGCTAGCAATCAAATCACATGGGGAAGAGGGAGAAGAAGCGAATGAATAAAAAACTATTTGCAGTACATCAAATGGAAGGGTGATGAGAATTAGCACTAGCTCAATGGATCAGCAAAAGACCAAAGCAAGATCATCAGCTACATAGATAGCTGATGTAATCACAAAGTACACTTAGTAGTAGATCCTCTTATATATATAATCCCCTTGAATCTAAGCAAGCACATGATGTTAACAAAGACCGGCCACACCAAGTGCGTACTACATATATATATTTTAGTAGTACTCCATATGATGAGAAATTGAGAGGATCGGGAGGAGATGAATTAGTAGTAGGGTAGTAATTAACTAAAGAAAGGAGGGGAAATTAATTAAAACCGGCCATCAATCCCAAAAAGGGTATGCAGGGTGTAGAGAGAGAAGCAAGCTAGCAGGAAAGAAAAAGGGGAAACAAGAAAGGAAAGGGAAAAAATAGAAAGAGAGAGAGATGATTTCCCGAAATGAGGAGGCATGCAGCTGACTCCTCCTCCTGGAGTAGCTGAGCTAGCTTGGATTGGACTGTGTTGCATGTGTTGCAGCACTAGTGAAGCATAAAATCATCAGCTGTAGCACACATGCAACCAGATGCACAAACCAAACATGGCAAATTCAGAGAGCAGCAGCTGAAATCCATGGAAGCGGCCGGCCAGAAACGGCAAAAAGCTAGGAGAATTATTGAGTTCATCCATCTCAGGCGGGCTCAGGTGCTCCAGAAATGGCAAGGAATCGATCAGGCTATAGGTGTACCTGGAGTCAGTGGCGTACTCGTAGAGCTTGCCCTTGGGGGAGAAGACGATGGCGGCGACCTCGGCGTCGCAGAGGACGGAGATCTCGTGCGCCTTCTTCAGCAATCCATTCCTCCTCTTGGAGAACGTCACCTGCCTGTTGATCTTGTTCTCTATCCGCTTCAGCTGCACCTTCCCCCGCCCCATCCTCGCCGCTCGCCGCTCGCCGGCGGCCGATCCCGATCTCGATCCGACCTAACCTTAGCTGCTACAAGCTAGCTGAAGGAGGAAGACGAACTAGCTAGTGGAAGAAGAAGAAGAGGAGGAGGAGAGGGATCGGCGAGAGAGAGAGAGAGAGGCCTCTTTGCTTTTGGGGACGGGTGTCAGT
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| CDS seq | ATGGGGCGGGGGAAGGTGCAGCTGAAGCGGATAGAGAACAAGATCAACAGGCAGGTGACGTTCTCCAAGAGGAGGAATGGATTGCTGAAGAAGGCGCACGAGATCTCCGTCCTCTGCGACGCCGAGGTCGCCGCCATCGTCTTCTCCCCCAAGGGCAAGCTCTACGAGTACGCCACTGACTCCAGGATGGACAAAATCCTTGAACGTTATGAGCGCTATTCATATGCTGAAAAGGCTCTTATTTCAGCTGAATCCGAGAGTGAGGGAAATTGGTGCCATGAATACAGGAAACTTAAGGCAAAGATTGAGACCATACAAAAATGTCACAAACACCTCATGGGAGAGGATCTAGAATCCCTGAATCTCAAAGAACTCCAACAGCTAGAGCAGCAGCTGGAGAGTTCATTGAAGCACATAATATCAAGAAAGAGCCACCTTATGCTTGAGTCCATTTCCGAGCTGCAGAAAAAGGAGAGGTCACTGCAGGAGGAGAACAAGGCTCTGCAGAAGGAACTGGTGGAGAGGCAGAAGAATGTGAGGGGCCAGCAGCAAGTAGGGCAGTGGGACCAAACCCAGGTCCAGGCCCAGGCCCAAGCCCAACCCCAAGCCCAGACAAGCTCCTCCTCCTCCTCCATGCTGAGGGATCAGCAGGCACTTCTTCCACCACAAAATATCTGCTACCCGCCGGTGATGATGGGCGAGAGAAATGATGCGGCGGCGGCGGCGGCGGTGGCGGCGCAGGGCCAGGTGCAACTCCGCATCGGAGGTCTTCCGCCATGGATGCTGAGCCACCTCAATGCTTAA
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| Protein seq | MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA |
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| Function | MADS-box transcription factor 15 [UniProtKB/Swiss-Prot:Q6Q9I2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0108900 | OsNip_07t0108900-02 | Chr07 | 471234 | 477598 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGCGGGGGAAGGTGCAGCTGAAGCGGATAGAGAACAAGATCAACAGGCAGGTGACGTTCTCCAAGAGGAGGAATGGATTGCTGAAGAAGGCGCACGAGATCTCCGTCCTCTGCGACGCCGAGGTCGCCGCCATCGTCTTCTCCCCCAAGGGCAAGCTCTACGAGTACGCCACTGACTCCAGGATGGACAAAATCCTTGAACGTTATGAGCGCTATTCATATGCTGAAAAGGCTCTTATTTCAGCTGAATCCGAGAGTGAGGGAAATTGGTGCCATGAATACAGGAAACTTAAGGCAAAGATTGAGACCATACAAAAATGTCACAAACACCTCATGGGAGAGGATCTAGAATCCCTGAATCTCAAAGAACTCCAACAGCTAGAGCAGCAGCTGGAGAGTTCATTGAAGCACATAATATCAAGAAAGAGCCACCTTATGCTTGAGTCCATTTCCGAGCTGCAGAAAAAGGAGAGGTCACTGCAGGAGGAGAACAAGGCTCTGCAGAAGGAACTGGTGGAGAGGCAGAAGAATGTGAGGGGCCAGCAGCAAGTAGGGCAGTGGGACCAAACCCAGGTCCAGGCCCAGGCCCAAGCCCAACCCCAAGCCCAGACAAGCTCCTCCTCCTCCTCCATGCTGAGGGATCAGCAGGCACTTCTTCCACCACAAAATATCTGCTACCCGCCGGTGATGATGGGCGAGAGAAATGATGCGGCGGCGGCGGCGGCGGTGGCGGCGCAGGGCCAGGTGCAACTCCGCATCGGAGGTCTTCCGCCATGGATGCTGAGCCACCTCAATGCTTAA
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| Protein seq | MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIISRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0108900 | OsNip_07t0108900-01 | Chr07 | 471352 | 477655 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGGCGGGGGAAGGTGCAGCTGAAGCGGATAGAGAACAAGATCAACAGGCAGGTGACGTTCTCCAAGAGGAGGAATGGATTGCTGAAGAAGGCGCACGAGATCTCCGTCCTCTGCGACGCCGAGGTCGCCGCCATCGTCTTCTCCCCCAAGGGCAAGCTCTACGAGTACGCCACTGACTCCAGGATGGACAAAATCCTTGAACGTTATGAGCGCTATTCATATGCTGAAAAGGCTCTTATTTCAGCTGAATCCGAGAGTGAGGTAAAACACAGTAGGTTGTATGATATATAA
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| Protein seq | MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEVKHSRLYDI |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_07g0108900 | OsNip_07t0108900-03 | Chr07 | 471210 | 472013 | - | IsoSeq | ||
| CDS seq | CCAGCAGCAAGTAGGGCAGTGGGACCAAACCCAGGTCCAGGCCCAGGCCCAAGCCCAACCCCAAGCCCAGACAAGCTCCTCCTCCTCCTCCATGCTGAGGGATCAGCAGGCACTTCTTCCACCACAAAATATCTG |
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| Protein seq | PAASRAVGPNPGPGPGPSPTPSPDKLLLLLHAEGSAGTSSTTKYL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 471721 | 471877 | - | OsNip_07t0108900-03 | OsNip_07t0108900-01,OsNip_07t0108900-03,OsNip_07t0108900-02 | All |
| RI | Chr07 | 473396 | 474873 | - | OsNip_07t0108900-01 | OsNip_07t0108900-01,OsNip_07t0108900-02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 34.978500 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0752800 | RBH | 0.000000 | 0.0 | 26.036764 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01820 | RBH | 0.0 | 0.0 | 7.732103 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000560 | RBH | 0.0 | 0.0 | 54.330105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000610 | RBH | 0.0 | 0.0 | 28.606325 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000540 | RBH | 0.0 | 0.0 | 76.407242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000560 | RBH | 0.0 | 0.0 | 162.460205 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007800 | RBH | 0 | 0.2114915 | 111.533413 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000550 | RBH | 0.0 | 0.0 | 10.451566 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0006000 | RBH | 0 | 0.1608855 | 160.0637135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0000570 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000590 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_07g0000620 | RBH | 0.000000 | 0.0 | 0.274202 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000590 | RBH | 0.0 | 0.0 | 20.130857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000600 | RBH | 0.0 | 0.0 | 73.030777 |
