Basic Info

Gene ID OGI # | Score   Accession | Assembly | Annotation Location Links
OsLaMu_07g0000590 OGI:07001220 | 16/16 LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) Chr07:458572-465049
Gene Symbol RAP1A, OsMADS15, FDRMADS3, RMADS215, MADS15, DEP
DNA seq

ataattcgattgattagtttgcatctgcagttaattagcgtataaacacaatcataaattaattaaccatcacgggagcatggcatgcaaatatatttatatgcacacaattgcatgcatatatatcagtaggaagcactaggtacgtgctgatgattacacaaagacacatcctgatccttgctcataattaatttcttgcaaatcatatgtagcctgtagggtagggggcagcaggcaaacacatatataagaatagcttaatcgctaggttttttttttgagatcaatttcattttaggagaatcatatatattatcgctaggatcgataccattgacttcaattcattcaaggttgctcccatgattctcggtgcatacggcagctgtttggccgacgacgacgacgatgatcatcttaagcattgaggtggctcagcatccatggcggaagacctccgatgcggagttgcacctggccctgcgccgccaccgccgccgccgccgccgcatcatttctctcgcccatcatcaccggcgggtagctactatgcacagatgtgcataattatatacatgcagttaattaattagagacttagaacttaacaagggtgtgatcgatcttaattagtgcagtaacagattaatttataactgaatagcaactgatgagacatgaatgcagacatatacgtaccagatattttgtggtggaagaagtgcctgctgatccctcagcatggaggaggaggaggagcttgtctgggcttggggttgggcttgggcctgggcctggacctgggtttggtcccactgccctacttgctgctggcccctcacattcttctgcctctccaccagctgcatgcgcacactacaaacatcacgatttttttctaagaggcacaaaccgaccaccaaggaaaccacataaaccgctagtaagggacaaatttatcgagatgtatttgatagcgcaatgataaaatatgtgtggttttaacctaaggtcatatgttcaatcgccaacacgctaaaaaaatagccgtcatgtctagaaggcaaagaaaattacttctcatttgcggtcaactgtgggggaaaaaattattggcgatatgatccacccaacaagtaaactacagcaatttcaaactttcgagtgcgcatatgaattaattatctctaatgcctccattgacaaaactagtaattaaacccatggattgattggaaaattgtcaacaagataaatcaattgatcaaaaccaatgcgcatgaattaattatgtttagtgcctccattggctagtcaagcagaatgaattaattaatataagcagcagtaaatactatattttcgacaacttacttccttctgcagagccttgttctcctcctgtagtgacctctcctgcactcatgcaagaaaactgcactatcagttgagactaaccaagagtaaactataactaactactagctaacaacggtttgcatgcacgattcatatatacatgcatacacagtagtgcagttcaattggtcacctttttctgcagctcggaaatggactcaagcataaggtggctctgcaaacacaaacatattgttctagttagtccgtcatatttggtaattgtactccagaatgtgctaaaaagtttatatttggtaattgttcctccagaatgtgctgaaaatatttactcatatattttctcaaaaaggaaaaaaaagaacatttgtttcaaagtagcagtgacaccaagacatttggatatatatttatgtaactcaggcatgcgcatgcatgaattatttcaattcagtccagtttgaaacagaacatgctaaatatattactacgtttctttgtaataatttgctcctttttttctgtacatttggtgtgtagaggtcgggagttcaaataaaaagattccactatccaaaaaaatactacctttcttgatcttatgtgcttcaatgaactctccagctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatgaggtgtctacacaagatacataagttagtttcacgtcatcttcagcagtcaataccggaagttctcttttaaattggtttaaaaataataattagtgcaattagttcgaaatttatttaacattattatagaaattggatatatatatatcgattacttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatgacaccaatttccctgtacaaaaaaaaactctttgtcagtataaaccaatatatatggttggttgatgttttctgtgagccaaccattactgtcaaaattagagaactattactaaattactgtaaacataaacagatgatgaaacgatggaaataaaatattataaagaacctaaatgcatcctcatttagtggagtatatagaaaatcctcaaatgcaaccgtgtatgtgaatatttgataaaattaagggagttatagctccttaaattaatttattagtagatgagaactcctttgctgtcttgataaatgtagaaattcaacaaatgataaaaagaggcatgtttaatttttttaaatgtacatgaacttttcaattaaggtagagaactaattaacttactcctagtgcttattgatgcatttattcgcattatccgcacactaatgccgtgatatatgcaacaactttgccaaaccacacacatttttttctttactccaagaaggtggaagtggtaaaggaacaaatatttgcacttatcatcattttttaacacttaccaaagttttactcatcaaacagtactgaaaacaaataccatgagtacttctggatgcagtgcatgttgtcaactggggaagagttatcttgagaaaaaaaaatgaagaaacatctcatcgatcacagtccatatgcatgtttatgattacagttttacttagtatatataaatatgcacttagaatatcgaaacatttggtctccaaccggattctaccagcgctattattgtattgtgcatgtttctatgttttcttaagcatattatattgcttcatgaaacacaaaagaaaccactcaaacggagtatggataaaaaaatagaatagtagcatttagttaaaaacaagtgcaattttaatttatttacagaagaattagtatagatcataacattaatgataggatgctgatcgcaagctagcgatcgacttccatgcatgtggcccattaattgtatgaccataataaataaaatttgaggggattaaatgaagggaatgaggactctcctgcatgatatcccaataagtagaaattttaagaaatatgccagagtgcaaaagacacgaggtttgaagttaaaaagtataaaacagaaggttaccaacatctagttttggcaagtagaacgatagaattcagaaaaactgctttgttaacatgtgatttaaaaggccacaaggaaatgatatgattgaaatgctaatgcaatagaaaaggaacaataatattcccttcatgtaaaagttatatatcatacaacctactgtgttttacctcactctcagattcagctgaaataagagccttttcagcatatgaatagcgctcataacgttcaaggattttgtccatcctgcagggaaaaccatcatgagcagaatctgaaattagtccactatatatgtaaatactttgcattcagcattctcatgacaacgtttaggaagtatatttaaatgttctgaagctaggaatgcctaccaaactattccaagcaattaaagctgaaatgtggattaagactactaatatatagatatcggcatttgtatgcacaagagctcttttgctgtctaaacactcgacacagccaaataaaaagcatgcacatgaaaacactcggttatattcaagtgcatgcatgaattatattatcttcaagaaaacagggacgttgtatgggactgtgtgacgaaaaaaaagctcctcatgacacatgtgatatgagggtgtgaacataagaattcacccattccaaaatttgaagtgggttgcttaggaaaatttagcaaaaaataatcaagattatatataacagcaccgttaaacagccatcagcaaggaccctaacaaaaccagtggaactgttcaaaacagactatatataatagcaccattgaattactgggtgatgatttgcacatcttgataattgcaagtaatttaacacctttattttagaccaacctccccataatcctatagccgtacgtataggtgtttacagactccttgatgatcagtaagattgtgagactacagtttaattatatcacgaggatcctgaagaacttgacttcttctgttttactggaacacccttagatctatctcaggaagatctataattaagatcaaataagtgaagatttctgagctagaaatgaagcgccttagactgatcttgacgctggggagtgtgcagggcactgttccagtacaacacagacgaccgtaaaagtcctctttacctagacgtcagaaacgcattttgagcaaaagctagcaagcaagataaattatttttctgaaacacgggcgatggatagctattatgtgattttacagacagcaagattattttttgaagtcatcgtgtcacaggatgtttaagtacatctcttgatctaactccagaataattagtgaattatcccatcattattaattaatcagctgagcagaaaaggaaatatctcgcgtacgtggtcgttctagaccaaaacacacaagcaactggccatgaagttaaaccaaaagagatagatcaaatttgatctagggctctttaaagagatgcttaacgtgaataataccaaataaagattcatcataagaagaggcagaaacatagaagaggatgagagagaagggaagaggaaaggccagatctgtccatctccaacgttttggtatctgaggaagatgatgcataagcaagaaaaacagctgtttgagtaattttaagccaagcctcacaagaagaggggaattaattacttgagaaacagaagatgttttgcatgcatcagctgtcagactgtgaacaatagggaggagtgcatgacactggtggtggactcctcgtaattcgtgtgatatattctttaattaatttcttgacaggtggagaacaaaggcacgcgcatgagattaatttgagaggaagatggaacgaaatcaacccaaataaaagtcaggaaggagctagcaatcaaatcacatggggaagagggagaagaagcgaacgaataaaaaactatttgcagtacatcaaatggaagggtgatgagaattagcactagctcaatggatcagcaaaagaccaaagcaagatcatcagctacatagatagctgatgtaatcacaaagtacacttagtagtagatcctcttatatatataatccccttgaatctaagcaagcacatgatgttaacaaagaccggccacaccaagtgcgtactacatatatatattttagtagtactccatatgatgagaaattgagaggatcgggaggagatgaattagtagtagggtagtaattaactaaagaaaggaggggaaattaattaaaaccggccatcaatcccaaaaagggtatgcagggtgtagagagagaagcaagctagcaggaaagcaaaaggggaaacaagaaaggaaagggaaaaaatagaaagagagagagatgatttcccgaaatgaggaggcatgcagctgactcctcctcctggagtagctgagctagcttggattggactgtgttgcatgtgttgcagcactagtgaagcataaaatcatcagctgtagcacacatgcaaccagatgcacaaaccaaacatggcaaattcagagagcagcagctgaaatccatggaagcggccggccagaaacggcaaaaagctaggagaattattgagttcatccatctcaggcgggctcaggtgctccagaaatggcaaggaatcgatcaggctacaggtgtacctggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcaccttcccccgccccatcctcgccactcgccgctcgccggcggccgatcccgatctcgatccgacctaaccttagctgctacaagctagctgaaggaggaagacgaactagctagtggaagaagaagaagaggaggagagggatcgacgagagagagagagaggcctctttgcttttggggacgggtgtcagt

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CDS seq

atggggcgggggaaggtgcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagctctacgagtacgccactgactccaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatctgagagtgagataactcttccccagttgacaacatgcactgcatccagaagtactcatggtatttgttttcagtactgtttgatgagtaaaactttgggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactacaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa

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Protein seq

MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEITLPQLTTCTASRSTHGICFQYCLMSKTLGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA

Function MADS-box transcription factor 15 [UniProtKB/Swiss-Prot:Q6Q9I2]

Transcripts

Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000590 OsLaMu_07g0000590.04 Chr07 460686 465049 - NAM
CDS seq

atggggcgggggaaggtgcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagctctacgagtacgccactgactccaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatctgagagtgagggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaagtaa

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Protein seq

MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHK

Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000590 OsLaMu_07g0000590.05 Chr07 458572 461476 - NAM
CDS seq

atgcactgcatccagaagtactcatgtaatggttggctcacagaaaacatcaaccaaccatatatattggtttatactgacaaagagtttttttttgtacagggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactacaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa

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Protein seq

MHCIQKYSCNGWLTENINQPYILVYTDKEFFFVQGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000590 OsLaMu_07g0000590.01 Chr07 458572 465049 - NAM
CDS seq

atggggcgggggaaggtgcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagctctacgagtacgccactgactccaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatctgagagtgagataactcttccccagttgacaacatgcactgcatccagaagtactcatggtatttgttttcagtactgtttgatgagtaaaactttgggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactacaggaggagaacaaggctctgcagaaggaatgtgcgcatgcagctggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatga

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Protein seq

MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEITLPQLTTCTASRSTHGICFQYCLMSKTLGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKECAHAAGGEAEECEGPAASRAVGPNPGPGPGPSPTPSPDKLLLLLHAEGSAGTSSTTKYLLPAGDDGREK

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000590 OsLaMu_07g0000590.03 Chr07 458572 465049 - NAM
CDS seq

atggggcgggggaaggtgcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagctctacgagtacgccactgactccaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatctgagagtgagggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactacaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa

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Protein seq

MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA

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Gene Transcript Chromosome Start End Strand Source
OsLaMu_07g0000590 OsLaMu_07g0000590.02 Chr07 458572 465049 - NAM
CDS seq

atggggcgggggaaggtgcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagctctacgagtacgccactgactccaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatctgagagtgagataactcttccccagttgacaacatgcactgcatccagaagtactcatggtatttgttttcagtactgtttgatgagtaaaactttgggaaattggtgtcatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactacaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa

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Protein seq

MGRGKVQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKLYEYATDSRMDKILERYERYSYAEKALISAESESEITLPQLTTCTASRSTHGICFQYCLMSKTLGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA

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Event Type Chromosome Start End Strand Alternative mRNAs Total mRNAs Source
A3 Chr07 459437 459949 - OsLaMu_07g0000590.01 OsLaMu_07g0000590.05,OsLaMu_07g0000590.02,OsLaMu_07g0000590.03,OsLaMu_07g0000590.01 All
SE Chr07 460858 462194 - OsLaMu_07g0000590.01,OsLaMu_07g0000590.02 OsLaMu_07g0000590.02,OsLaMu_07g0000590.04,OsLaMu_07g0000590.03,OsLaMu_07g0000590.01 All

Expression

Leaf Root Panicle
FPKM 0.0 0.0 None

Homologues

Genome & Annotation Homologs Type Expression(FPKM)
Leaf Root Panicle
Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) OsNip_07g0108900 RBH 0.0 0.0 34.978500
Nipponbare | IRGSP 1.0 | MSU LOC_Os07g01820 RBH 0.0 0.0 7.732103
Nipponbare | IRGSP 1.0 | RAP-db Os07g0108900 RBH None None None
Azucena | AzucenaRS1 | Gramene(+IsoSeq) OsAzu_07g0000560 RBH 0.0 0.0 54.330105
KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) OsKeNa_07g0000610 RBH 0.0 0.0 28.606325
CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) OsCMeo_07g0000540 RBH 0.0 0.0 76.407242
ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) OsARC_07g0000540 RBH 0.0 0.0 None
PR 106 | Os127742RS1 | Gramene(+IsoSeq) OsPr106_07g0000560 RBH 0.0 0.0 162.460205
Minghui 63 | MH63RS3 | HZAU OsMH63_07G0007800 RBH 0 0.2114915 111.533413
IR 64 | OsIR64RS1 | Gramene(+IsoSeq) OsIR64_07g0000550 RBH 0.0 0.0 10.451566
Zhenshan 97 | ZS97RS3 | HZAU OsZS97_07G0006000 RBH 0 0.1608855 160.0637135
LIMA | Os127564RS1 | Gramene(+IsoSeq) OsLima_07g0000570 RBH 0.0 0.0 None
KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) OsKYG_07g0000590 RBH 0.0 0.0 None
GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) OsGoSa_07g0000590 RBH 0.000000 0.0 None
LIU XU | Os125827RS1 | Gramene(+IsoSeq) OsLiXu_Ung0074540 RBH 0.0 0.0 12.050184
LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) NA NA NA NA NA
N22 | OsN22RS2 | Gramene(+IsoSeq) OsN22_07G000590 RBH 0.0 0.0 20.130857
NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) OsNaBo_07g0000600 RBH 0.0 0.0 73.030777
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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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