Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_07g0000570 | OGI:07001220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr07:443098-449085 | ||||||||
| Gene Symbol | RAP1A, OsMADS15, FDRMADS3, RMADS215, MADS15, DEP | ||||||||||
| DNA seq | ataattcgattgattagtttgcatctgcagttaattagcgtataaacacaatcataaattaattaaccatcacgggagcatggcatgcaaatatatttatatgcacacaattgcatgcatatatatcagtaggaagcactaggtacgtgctgatgattacacaaagacacatcctgatccttgctcataattaatttcttgcaaatcatatgtagcctgtagggtagggggcagcaggcaaacacatatataagaatagcttaatcgctaggtttgtttttttgagatcaatttcattttaggagaatcatatatattatcgctaggatcgataccaatgacttcaatcattcaaggttgctcccatgattcacggtgcatacggcagctgtttggccgacgacgacgacgatgatcatcttaagcattgaggtggctcagcatccatggcggaagacctccgatgcggagttgcacctggccctgcgccgccaccgccgccgccgccgccgcatcatttctctcgcccatcatcaccggcgggtagctactatgcacagatgtgcataattatatacatgcagttaattaattagagacttagaacttaacaagggtgtgatcgatcttaattagtgcagtaacagattaatttataactgaatagcaactgatgagacatgaatgcagacatatacgtaccagatattttgtggtggaagaagtgcctgctgatccctcagcatggaggaggaggaggagcttgtctgggcttggggttgggcttgggcctgggcctggacctgggtttggtcccactgccctacttgctgctggcccctcacattcttctgcctctccaccagctgcatgcgcacactacaaacatcacgatttttttctaagaggcacaaaccgaccaccaaggaaaccacataaaccgctagtaagggacaaatttatcgagatgtatttgatagcgcaatgataaaagatgtgtggttttaacccaaggtcatatgttcaattgccaacacgctaaaaaaatagccgtcaagtctagaaggcaaagaaaattacttctcatttgcggtcaactgtgggggaaaaaattattggcgatatgatccacccaacaagtaaactacagcaatttcaaactttcgagtgcgcatatgaattaattatctctaatgcctccattgacaaaactagtaattaaacccatggatagattggaaaattgtcaacaagataaatcaattgatcaaaaccaatgcgcatgaattaattatgtttagtgcctccattggctagtcaagcagaatgaattaattaatataagcagcagtaaatactatattttcgacaacttacttccttctgcagagccttgttctcctcctgcagtgacctctcctgcactcatgcaagaaaactgcactatcagttgagactaaccaagagtaaactataactaactactagctaacaacggtttgcatgcacgattcatatatacatgcatacacagtagtgcagttcaattggtcacctttttctgcagctcggaaatggactcaagcataaggtggctctgcaaacacaaacatattgttctagttagtccgtcatatttggtaattgtactccagaatgtgctaaaaagtttatatttggtaattgttcctccagaatgtgctgaaaatatttactcatatattttctcaaaaaggaaaaaaaaaagaacatttgtttcaaagtagcagtgacaacaagacatttggatatatatttatgtaactcaggcatgcgcatgcatgaattatttcaattcagtccagtttgaaacagaacatgctaaatatattactacgtttctttgtaataatttgctcctttttttctgtacatttggtgtgtagaggtcgggagttcaaataaaaagattccactatccaaaaaaatactacctttcttgatcttatgtgcttcaatgaactctccagctgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatgaggtgtctacacaagatacataagttagtttcacgtcatcttcagcagtcaataccggaagttctcttttaaattggtttaaaaataataattagtgcaattagttcgaaatttatttaacattattatagaaattggatatatatatatcgattacttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcaccaatttccctgtacaaaaaaaaaactctttgtcagtataaaccaatatatatggttggttgatgttttctgtgagccaaccattactgtcaaaattagagaactattactaaattactgtaaacataaacagatgatgaaacgatggaaataaaatattataaagaacctaaatgcatcctcatttagtggagtatatagaaaatcctcaaatgcaaccgtgtatgtgaatatttgataaaattaagggagttatagctccttaaattaatttattagtagatgagaactcctttgctgtcttgataaatgtagaaattcaacaaatgagaactaattaacttactcctagtgcttattgatgcatttattcgcattatccgcacactaatgccgtgatatatgcaacaactttgccaaaccacacacatttttttctttactccaagaaggtggaagtggtaaaggaacaaatatttgcacttatcatcattttttaacacttaccaaagttttactcatcaaacagtactgaaaacaaataccatgagtacttctggatgcagtgcatgttgtcaactggggaagagttatcttgagaaaaaaaaaatgaagaaacatctcatcgatcacagtccatatgcatgtttatgattacagttttacttagtatatataaatatgcacttagaatatcgaaacatttggtctccaaccggattctaccagcgctattattgtattgtgcatgtttctatgttttcttaagcatattatattgcttcatgaaacacaaaagaaaccactcaaacggagtatggataaaaaaatagaatagtagcatttagttaaaaacaagtgcaattttaatttatttacggaagaattagtatagatcataacattaatgataggatgctgatcgcaagctggcgatcgacttccatgcatgtggcccattaattgtatgaccataataaataaaatttgaggggattaaatgaagggaatgaggactctcctgcatgatatcccaataagtagaaattttaagaaatatgccagagtgcaaaagacacgaggtttgaagttaaaaagtataaaacagaaggttaccaacatctagttttggcaagtagaacgatagaattcagaaaaactgctttgttaacatgtgatttaaaaggccacaaggaaatgatatgattgaaatgctaatgcaatagaaaaggaacaataatattcccttcatgtaaaagttatatatcatacaacctactgtgttttacctcactctcggattcagctgaaataagagccttttcagcatatgaatagcgctcataacgttcaaggattttgtccatcctgcagggaaaaccatcatgagcagaatctgaaattagtccactatatatgtaaatactttgcattcagcattctcatgacaacgtttaggaagtatatttaaatggtctgaagctaggaatgcctaccaaactattccaagcaattaaagctgaaatgtggattaagactactaatatatagatatcggcatttgtatgcacaagagctcttttgctgtctaaacactcgacacagccaaataaaaagcatgcacatgaaaacactcggttatattcaagtgcatgcatgaattatcttatcttcaagaaaacagggacgttgtatgggactgtgtgacgaaaaaaaagctcctcatgacacatgtgatatgagggtgtgaacataagaattcacccattccaaaatttgaagtgggttgcttaggaaaatttagcaaaaaataatcaagattatatataacagcaccgttaaacagccatcagcaaggaccctaacaaaaccagtggaactgttcaaaacagactatatataatagcaccattgaattactgggtgatgatttgcacatcttgataattgcaagtaatttaacacctttattttagaccaacctccccataatcctatagccgtacgtataggtgtttacagactccttgatgatcagtaagattgtgagactacagtttaattatatcacgaggatcctgaagaacttgacttcttctgttttactggaacacccttagatctatctcaggaagatctataattaagatcaaataagcgaagatttctgagctagaaatgaagcgccttagactgatcttgacgctggggagtgtgcagggcactgttccagtacaacacagacgaccgtaaaagtcctctttacctagacgtcagaaacgcattttgagcaaaagctagcaagcaagataaattatttttctgaaaaggctagctattatgtgattttacagagagcaagattattttttgaagtcatcgtgtcacaggatgtttaagtacatctcttgatctaactccagaataattagtgaattatcccatcattattaattaatcagctgagcagaaaaggaaatatctcgcgtacgtggtcgttctagaccaaaacacacaagcaactgaccatgaagttaaaccaaaagagatagatcaaatttgatctagggctctttaaagagatgcttaacgtgaataataccaaataaagattcatcataagaagaggcagaaacatagaagaggatgagagagaagggaagaggaaaggccagatctgtccatctccaacgttttggtatctgaggaagatgatgcataagcaagaaaaacagctgtttgagtaattttaagccaagcctcacaagaagaggggaattaattacttgagaaacagaagatgttttgcatgcatcagctgtcagactgtgaacaatagggaggagtgcatgacactggtggtggactcctcgtaattcgtgtgatatattctttaattaatttcttgacaggtggagaacaaaggcacgcgcatgagattaatttgagaggaagatggaacgaaatcaacccaaataaaagtcaggaaggagctagcaatcaaatcacatggggaagagggagaagaagcgaatgaataaaaaactatttgcagtacatcaaatggaagggtgatgagaattagcactagctcaatggatcagcaaaagaccaaagcaagatgagaaattgagaggatcgggaggagatgaattagtagtagggtagtaattaactaaagaaaggaggggaaattaattaaaaccggccatcaatcccaaaaagggtatgcagggtgtagagagagaagcaagctagcaggaaagcaaaaggggaaacaagaaaggaaagggaaaaaatagaaagagagagagatgatttcccgaaatgaggaggcatgcagctgactcctcctcctggagtagctgagctagcttggattggactgtgttgcagcactagtgaagcataaaatcatcagctgtagcacacatgcaaccagatgcacaaaccaaacatggcaaattcagagagcagcagctgaaatccatggaagcggccggccagaaacggcaaaaagctaggagaattattgagttcatccatctcaggagggctcaggtgctccagaaatggcaaggaatcgatcaggctataggtgtacctggagtcagtggcgtactcgtagagcttgcccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcaa
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| CDS seq | atggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatccgagagtgagggaaattggtgccatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactgcaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa
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| Protein seq | MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA |
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| Function | MADS-box transcription factor 15 [UniProtKB/Swiss-Prot:Q6Q9I2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000570 | OsLima_07g0000570.02 | Chr07 | 443098 | 449085 | - | NAM | ||
| CDS seq | atggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatccgagagtgagggaaattggtgccatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactgcaggaggagaacaaggctctgcagaaggaactggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctgagccacctcaatgcttaa
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| Protein seq | MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRDQQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLNA
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_07g0000570 | OsLima_07g0000570.01 | Chr07 | 443098 | 449085 | - | NAM | ||
| CDS seq | atggacaaaatccttgaacgttatgagcgctattcatatgctgaaaaggctcttatttcagctgaatccgagagtgagggaaattggtgccatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagctggagagttcattgaagcacataagatcaagaaagagccaccttatgcttgagtccatttccgagctgcagaaaaaggagaggtcactgcaggaggagaacaaggctctgcagaaggaatgtgcgcatgcagctggtggagaggcagaagaatgtgaggggccagcagcaagtagggcagtgggaccaaacccaggtccaggcccaggcccaagcccaaccccaagcccagacaagctcctcctcctcctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgatgggcgagagaaatga
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| Protein seq | MDKILERYERYSYAEKALISAESESEGNWCHEYRKLKAKIETIQKCHKHLMGEDLESLNLKELQQLEQQLESSLKHIRSRKSHLMLESISELQKKERSLQEENKALQKECAHAAGGEAEECEGPAASRAVGPNPGPGPGPSPTPSPDKLLLLLHAEGSAGTSSTTKYLLPAGDDGREK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr07 | 443963 | 444475 | - | OsLima_07g0000570.01 | OsLima_07g0000570.02,OsLima_07g0000570.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0108900 | RBH | 0.0 | 0.0 | 34.978500 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01820 | RBH | 0.0 | 0.0 | 7.732103 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000560 | RBH | 0.0 | 0.0 | 54.330105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000610 | RBH | 0.0 | 0.0 | 28.606325 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000540 | RBH | 0.0 | 0.0 | 76.407242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000540 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0000560 | RBH | 0.0 | 0.0 | 162.460205 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007800 | RBH | 0 | 0.2114915 | 111.533413 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000550 | RBH | 0.0 | 0.0 | 10.451566 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0006000 | RBH | 0 | 0.1608855 | 160.0637135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000590 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000590 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074540 | RBH | 0.0 | 0.0 | 12.050184 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000590 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000590 | RBH | 0.0 | 0.0 | 20.130857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000600 | RBH | 0.0 | 0.0 | 73.030777 |
