Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLiXu_07g0000620 | OGI:07001220 | 16/16 | LIU XU | Os125827RS1 | Gramene(+IsoSeq) | Chr07:414856-422617 | ||||||||
| Gene Symbol | RAP1A, OsMADS15, FDRMADS3, RMADS215, MADS15, DEP | ||||||||||
| DNA seq | atatattcgattgattagtttgcatctgcagttaattacgtataaacacatcataaattaattaaccatcacgggagcatggcatgcaaatatatttatatgcaaacaattgcatgcatatatatcagtaggaagcactaggtacgtgctgatgattacacaaagacacatcctgatccttgctcataattaattcttgcaaatcatatgtacctgtagggtaggggcagcaggcaacgcatatataagaatagcttaatcgctaggtttttttttttgagatcaatttcttttaggagaatcatatatattatcgctaggatcgataccaatgacttcaattcattcaaggttgctcccatgattctcggtgcatacggcagctgtttggccgacgacgacgacgatgatcatcttaagcattgaggtggctcagcatccatggcggaagacctccgatgcggagttgcacctggccctgcgccgccaccgccgccgccgccgccgcatcatttctccgccctcatcaccggcgggtagctactatgcacagatgtgcataattatatacatgcagttaattaattagagactttaactaacaagggtgtgatcgatcttaattagtgcagtaacagattaatttataactgaatagcaactgatgagacatgaatgcagacatatacgtaccagatattttgtggtggaagaagtgcctgctgatccctcagcatggagaggaggaggagcttgtctgggcttggggttgggcttggcctgggcctggacctgggtttggtcccactgccctactgctgctggcccctcacattcttgcttgcctccaccagctgcatgcgcacactacaaacatcacgatttttttctaagaggcacaaaccgaccgccaaggaaaccacataaaccgctagtaagggataaatttatcgagatgtatttgatagcgcaatgataaaagatgtgtggttttaacccAAggtcatatgttcgatcgccaacacgctaaaaaaatagccgtcaagtctagaaggcaaagaaaattacttctcatttgcggtcAactgtgggggaaaaaaActattggcgatatgatccacccacaagtaactacagcaatttcaaactttcgagtgcgcatatgaattaattatctctaatgcctccattgacaaaactagtaattaaacccatggatagattggaaaattgtcaacaagataaatcaattgatcaaaccaatgcgcatgaattaattatgtttagtgcctccattggctagtcaagcagaatgaattaattaatatagcagcagtaaatactatattttcgacaacttacttccttctgcagagccttgttctcctctgcagtgacctctcctgcactcatgcagaaaactgcactatcagttgagactaaccaagagtaaactataacaactactagctacaacggtttgcatgcacgattcatatatacatgcatacacagtagtgcagttcaattggtcacctttttctgcagctcgaaatggactcaagcataaggtggctctgcaaacacaaacatattgttctagttagtccgtcatatttggtaattgtactcagaatgtgctaaaaagtttatatttggtaattgttcctccagaatgtgctgaaaatatttactcatatattttctcaaaaaggaaaaaaaagaacatttgtttcaagtagcagtgacaacaagacatttggatatatattatttgtactcaggcatgcgcatgcatgaatatttcaattcagttccagtttgaaacagaacatgctaaatatattactacgtttcttttgtaatatttgctcctttttttgtacatttggtgtgtagaggtcgggagttcaataaaaagattccactatccaaaaatactacctttcttgatcttatgtgcttccatgaactctccactgctgctctagctgttggagttctttgagattcagggattctagatcctctcccatgaggtgtctacacaagatacataagttagtttcacgtcatcttcagcagtcataccggaagttctcttttaaatggtttaaaaatataattagtgcaattagttcgaaatttatttaacattattatagaaattggatatatatatcgattacttgtgacatttttgtatggtctcaatctttgccttaagtttcctgtattcatggcaccaatttccctgtacaaaaaaaaactctttgtcagtataaaccaatatatatggttggttgatgttttctgtgagccaaccattactgtcaaaattagagaactattactaaattactgtaaacataacagatgatgaaacgatggaaataaaatataaaagaacctaaatgcatcctcatttagtggagtatatagaaaatcctcaaatgcaaccgtgtatgtgaatatttgataaaattaagggagttaTAgctccttaaattaatttattagtagatgagaactcctttgctgtcttgataaatgtagaaattcaacaaatgataaaaggaggcatgtttaatttttataaatgtacatgaacttttcaatTaaggtagagaactaattaacttactcctagggcttattgatgcatttattcgcattatccgcacactaatgccgtgatatatgcaacaacttgccaaaccacacacatttttttctttactcccaagaaggtggaagtggtaaaggaacaatatttgcacttatcatcattttttaacacttaccaaagttttactcatcaaacagtactgaaaacaaataccatgagtacttctggatgcagtgcatgttgtcaactggggaagttatcttgagaaaaaaaaatgaaagaacatctcatcgatcacagtccatatgcatgtttatgattacagttatacttagtatatatatatgcacttagaatatcgaaacatttggtctccaaccgattctaccagcgctattattgtattgtgcatgtttctatgttttcttaagcatattatttgcttcatgaaacacaaaagaaaccactcaaacggagtatggataaaaaatagaatagtagcatttagttaaaaacaagtgcaattttaattatttacagaagaattagtatagatcataacattaatgataggatgctgatcgcaagctagcgatcgacttcctgcatgtggcccattattgtatgaccataataataaaattgaggggattaaatgaagggaatgaggactctcctgcattatatcccaataagtagaattttaagaaatatgccagagtgcaaaagacacgaggtttgaagttaaaaagtaaaacagaaggttaccacatctagttttggcagtagaacgataaaattcagaaaaactgctttgttaacatgtgatttaaaaggccacaaggaaatgatatgattgaaatgctaatgcatagaaaaggaacaataatattcccttcatgaaaattatatatcatacaacctactgtgtttacctcactctcagattcagctgaaataagagccgtttcagcatatgaatagcgctcataacgttcaaggattttgtccatcctgcagggaaaaccatcatgagcagaatctgaaattagtccactcataatactttgcattcagcattctcatgacaacgtttaggaagtatatttaaatgGtctgaagctaggaatgcctaccaaactattccaagcaattaaagctgaaatgtggattaagactactaatatatagctatcggcattttatatgcacaagagctcttttgctgtctaaacactcgacacagccaaataaaaagcatgcacatgaaaacactcggttatattcaagtgcatgcatgattatattatcttcaagaaaacagggacgttgtatgggactgtgtgacgaaaaaaagctcctcatgacacatgtgatatgagggtgtgaacagaattcacccattccaaaatttgaagtgggttgcttaggaaatttagcaaaaaataatcaagattatatataacgcaccgttaaacagccatcagcaaggaccctaacaaaccagtggaactgttcaaaagactatatataatagcaccattgaattactggtgatgatttgcacatcttgataattgcaagtaatttaacacctttatttagaccaacctccccataatcctatagccgtacgtataggtgtttacagactccttgatgatcagtaagattgtgagactacagtttattatatcacgaggatcctgaagaacttgaacttcttctgttttactggaacacccttagatctatctcaggaagatctataattaagatcaaataagtgaagatttctgagctagaaatgaagcgccttagactgatcttgacgctggggagtgtgcagggcactgtttccagtacaacacagacgaccgtaaaagtcctctttacctagacgtcagaaacgcattttgagcaaaagctagcaagcaagataaattatttttctgaaaacacgggcgatggatagctattatgtgattttacagacagcaagattattttttgaagtcatcgtgtcacaggatgtttaagtacatctcttgatctaactccagaataattagtgaatatccatcattattaataatcagctgagcagaaaaggaaatatctcgcgtacgtggtcgttctagaccaaacacacatcaactgcccatgaatttaaccaaaagagatagatcaaatttgatctagggctctttaaagagatgcttaacgtgaataataccaaataaagattcatcataagaagaggcagacatagaagaggatgagagagaagggaggaaaggccagatctgtccatctccacgttttggtatctgaggaagatgatgcataagcagaaaaacagctgtttgagtaattttaagccaagcctcacaagaagaggggaattaattacttgagaaacagaagatgttttgcatgcatcagctgtcagactgtgaacaatagggaggagtgcatgacactggtggtggactcctcgtaattcgtgtgatatattctttaattaatttcttgacaggtggagaacaaaggcacgcgcatgagattaatttgagaggaagatggaacgaaatcaacccaaataaaagtcagaaggagctagcatcaaatcactggggaagagggagaagaagcgaacgaataaaaactatttgcgtacatcaaatgaagggtgatgagaattagcactagctcaatggatcagcaaagaccaaagcaagatcatcagctacatagatagctgatgtaatcacaagtacacttagtagtagatcctctatatatataatccccttgaatctaagcaagcacatgatgttaacaagaccggccacaccaagtgcgtactacatatatatattttagtagtactccatatgatgaaaattgagaggatcgggagagatgaattagtagtagggtagtaattaactaaagaaggaggggaattaattaaaccggccatcaatcccaaaagggtatgcagggtgtagagagagaagcaagctagcaggaaagcaaaggggaaccagaaaggaaaggaaaaatagaagagagagagatgatttcccgaaatgaggaggcatgcagctgactcctcctcctggagtagctgagctagcttgattggactgtgttgcatgtgttgcagcactagtgaagcataaatcatcagctgtagcacacatgcaacagatgcacaaaccaaacatggcaaattcagagagcagcagctgaaatccatggaagcggccggccagaaacggcaaaaagctaggagaattatgagttcatccatctcaggcgggctcaggtgctccagaaatggcaaggaatcgatcaggctataggtgtacctggagtcagtggcgtactcgtagacttgcccttgggggagaagacgatggcggcgacctcggcgtcgcagaggacggagatctcgtgcgccttcttcagcaatccattcctcctcttggagaacgtcacctgcctgttgatcttgttctctatccgcttcagctgcccttcccccgccccatcctcgccgctcgccgctcgccggcggccgatcccgatctcgatccgacctaacctagctgctacaagctagctgaaggaggagacgaactagctagtggaagagaagaagaggagaggaggagagggatcgcgagagagagagagaggcctctttgcttttggggacgggtgtcagtatgctgtcgagctgtgattggtcccggaatcatggggcccacctgcagcctctcaagcctgctgcacacggattacattatattaatctggtaaaaaatattggcttaattattttaatatatataatataataacggcatgttcgtgagaaggaaagcttggggtcgattctgctgctatgctacctcctcacggtcgaactcccaacccctcgactccttttctccctttctttattattactattattatcctcttgtcttttttattgtatattgataatgtacacatgactacatggccaatcattactgcgaaattttgttaatttgcccatatcatacatggccaattatttaactataatccggttgtccttttttttacgatacgatccattcactatatatatttaaagatggaaaactaagtttaacttttctaacgctaatataatataaataacggagggagtatattggtatttactttctcaattacaaatacctatcttcaaattcagttgtaaataaatctttttttaagagacgtgtggatatgtggtccactagctgtttttattgtccttatttttctctattggttaaaccccactctcgcccacctacttgaatcgatttaggtgcaaaaatcatttgttagagcttgggcatgccaaaggtctagctaaacatgtagtataatagaagcatataacttaatgagtgcatgttcgtctttttcacaaccatactatatatctgagaccagctaaatactacttcatctgtttcacaatgtagaatttttagcattgaccacattcatatatatgtttaatatatattatatattatatgtgttgtgtgtctaaattcattacattttatgaatatgaacaatcaaacgagggagtataaggtattttagagatggagagagcagtgtacacacatatgtatgaatatatatacatttccaacagttattgcagaatttgtgcacacttttgtaccaattcgtgcatatgaatacatggtcaatagttacatatacgcgcacgacgtaccatgtcgttttcgaaaccttgaatactacttcatctgtttcacaatgtaagaatttttagcattgaccacattctatatatgttAatatatatatatatatatatatgtgTgtgtgtGtcTAaattcattaacatttatatgaatatgaacaataagaaacggagggagtataaggtAttttagagatggagagagcagtgtacacacatatgtatgaatatatatacatttcCaacagttattgcagaatttgtgcacccttttgtaccaattcgtgcatatgaatacatggtcaatagttacatatacgcgcacgacgtaccat
More
|
||||||||||
| CDS seq | atgcttgtagcagctaggttaggtcggatcgagatcgggatcggccgccggcgagcggcgagcggcgaggatggggcgggggaagggcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagtctacgagtacgccactgactccagattctgctcatgatggttttccctgcaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaacggctcttatttcagctgaatctgagagtgaggtaaacacaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagtggagagttcatggaagcacataagatcaagaaagagccaccttatgcttgagtccatttcgagctgcagaaaaaggagaggtcactgcagaggagaacaaggctctgcagaaggaactggtggaggcaagcaagaatgtgaggggccagcagcagtagggcagtgggaccaaacccaggtccaggcccaggccaagcccaaccccaagcccagacaagctcctcctcctctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgagggcggagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctga
More
|
||||||||||
| Protein seq | MLVAARLGRIEIGIGRRRAASGEDGAGEGQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKSTSTPLTPDSAHDGFPCRMDKILERYERYSYAETALISAESESEVNTTPHGRGSRIPESQRTPTARAAVESSWKHIRSRKSHLMLESISSCRKRRGHCRGEQGSAEGTGGGKQECEGPAAVGQWDQTQVQAQAKPNPKPRQAPPPLHAEGSAGTSSTTKYLLPAGDEGGEMMRRRRRRWRRRARCNSASEVFRHGC |
||||||||||
| Function | MADS-box transcription factor 15 [UniProtKB/Swiss-Prot:Q6Q9I2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000620 | OsLiXu_07g0000620.01 | Chr07 | 414856 | 422617 | - | NAM | ||
| CDS seq | atgcttgtagcagctaggttaggtcggatcgagatcgggatcggccgccggcgagcggcgagcggcgaggatggggcgggggaagggcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagtctacgagtacgccactgactccagattctgctcatgatggttttccctgcaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaacggctcttatttcagctgaatctgagagtgaggtaaacacaacacctcatgggagaggatctagaatccctgaatctcaaagaactccaacagctagagcagcagtggagagttcatggaagcacataagatcaagaaagagccaccttatgcttgagtccatttcgagctgcagaaaaaggagaggtcactgcagaggagaacaaggctctgcagaaggaactggtggaggcaagcaagaatgtgaggggccagcagcagtagggcagtgggaccaaacccaggtccaggcccaggccaagcccaaccccaagcccagacaagctcctcctcctctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgagggcggagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctga
More
|
|||||||
| Protein seq | MLVAARLGRIEIGIGRRRAASGEDGAGEGQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKSTSTPLTPDSAHDGFPCRMDKILERYERYSYAETALISAESESEVNTTPHGRGSRIPESQRTPTARAAVESSWKHIRSRKSHLMLESISSCRKRRGHCRGEQGSAEGTGGGKQECEGPAAVGQWDQTQVQAQAKPNPKPRQAPPPLHAEGSAGTSSTTKYLLPAGDEGGEMMRRRRRRWRRRARCNSASEVFRHGC
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLiXu_07g0000620 | OsLiXu_07g0000620.02 | Chr07 | 414856 | 422617 | - | NAM | ||
| CDS seq | atgcttgtagcagctaggttaggtcggatcgagatcgggatcggccgccggcgagcggcgagcggcgaggatggggcgggggaagggcagctgaagcggatagagaacaagatcaacaggcaggtgacgttctccaagaggaggaatggattgctgaagaaggcgcacgagatctccgtcctctgcgacgccgaggtcgccgccatcgtcttctcccccaagggcaagtctacgagtacgccactgactccagattctgctcatgatggttttccctgcaggatggacaaaatccttgaacgttatgagcgctattcatatgctgaaacggctcttatttcagctgaatctgagagtgagggaaattggtgccatgaatacaggaaacttaaggcaaagattgagaccatacaaaaatgtcacaaagccaccttatgcttgagtccatttcgagctgcagaaaaaggtgaccaattgaactgcactactgtgagaggtcactgcagaggagaacaaggctctgcagaaggaactggtggaggcaagcaagaatgtgaggggccagcagcagtagggcagtgggaccaaacccaggtccaggcccaggccaagcccaaccccaagcccagacaagctcctcctcctctccatgctgagggatcagcaggcacttcttccaccacaaaatatctgctacccgccggtgatgagggcggagaaatgatgcggcggcggcggcggcggtggcggcgcagggccaggtgcaactccgcatcggaggtcttccgccatggatgctga
More
|
|||||||
| Protein seq | MLVAARLGRIEIGIGRRRAASGEDGAGEGQLKRIENKINRQVTFSKRRNGLLKKAHEISVLCDAEVAAIVFSPKGKSTSTPLTPDSAHDGFPCRMDKILERYERYSYAETALISAESESEGNWCHEYRKLKAKIETIQKCHKATLCLSPFRAAEKGDQLNCTTVRGHCRGEQGSAEGTGGGKQECEGPAAVGQWDQTQVQAQAKPNPKPRQAPPPLHAEGSAGTSSTTKYLLPAGDEGGEMMRRRRRRWRRRARCNSASEVFRHGC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A5 | Chr07 | 416258 | 416392 | - | OsLiXu_07g0000620.02 | OsLiXu_07g0000620.02,OsLiXu_07g0000620.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.274202 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_07g0108900 | RBH | 0.0 | 0.0 | 34.978500 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os07g01820 | SBH | 0.0 | 0.0 | 7.732103 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os07g0108900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_07g0000560 | SBH | 0.0 | 0.0 | 54.330105 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_07g0000610 | SBH | 0.0 | 0.0 | 28.606325 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_07g0000540 | SBH | 0.0 | 0.0 | 76.407242 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_07g0000540 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_07g0022520 | SBH | 0.336076 | 0.0 | 44.181786 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0007800 | SBH | 0 | 0.2114915 | 111.533413 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_07g0000550 | SBH | 0.0 | 0.0 | 10.451566 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0006000 | SBH | 0 | 0.1608855 | 160.0637135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022260 | SBH | 0.170610 | 0.057630 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_07g0000590 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_07g0000590 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0074540 | RBH | 0.0 | 0.0 | 12.050184 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_07g0000590 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_07G000590 | SBH | 0.0 | 0.0 | 20.130857 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_07g0000600 | SBH | 0.0 | 0.0 | 73.030777 |
