Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
OsNip_06g0693000		OGI:06080980 \| 16/16			Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)			Chr06:28918691-28923984		Homologues MicroCollinearity RGI-JBrowse
Gene Symbol		RLCK206, OsRLCK206, RLCK215, OsRLCK215
DNA seq		GAAGCAGCTTTCCCGGCGGGGATCGGCCATGGCGAGCGGCCTGTGGGGCGCGCTCGGGCAGGCGTCGAGCGTGGCGCAGCTGGTCGGCGTGGACGCGCTGGGGCTGGTCTCCATGGTGGTGCAGGCGGCGCTGGCGGCGCGCCGCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGACCTCGTCGGCGGCCTGCTGCGGGAGCTAGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCGGCTCCAAGGCGCGCTGCGGCGGTGCTACGCACTCGTCAGGGCGTGCCAGGATGACTGCGGCTACCTCCACCGCCTGCTCCTCGGCGCTCGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATTGACATGTACATACGCCTCATCCCTCTCATCTCTCTAGTCGACAGCAGCAACAATAATCGTCGTGTCACGGTAAGCCCTTGTTTCATCCTTTTTCTAGTAATAAGATAATTTGGGTGGTTCATCTTAAAACTGAAGATTATGGCGTATCGAGATGGAGGAGAAATTGCTGATCTCTTTTTATGATGATTCATCTGATCGAAGTGATATGCTCAAGTGATCCTTCCTGTCAATGTTTCTGCTGTGCACTTGTACCTGAATTGGGGTACATAGCCATTTCAACTTTTAGTCAAACAACTTGACATGTACTAACTGTTAGTTCTGGAGTCATAAGATTTTCCTTACTTGTGCACTGTTAGTTCCAAAAGTCCACTTTGTGTGCAAGCCAATTTCATGTGAATGATATCTGCAGTTGTCTAGCAGGCAACCGAGGGGGTGCCCAGTGTAGTCCCAAGTTATTCAGATCATCACACAAGGTTAGATATTGTTTCAGTACCCCATAACTGATTACTTAATGTTTCTTTCCATATCAAATCCGGGAGCTGATGTCCTTATCACGGTTTTTGGGGAAAAAAAACTGTCAACATTGAAGGCGAACTATCGCCGATATTGAATATTTTCATGCTGGAACCAGAGAATCATTGACCATGGCCGTGTTTAGTTCACCCCCAACTACCCCAAACTTCCAACTTTTCATCACATCACATCACATCTAAAACTTTCCTACACACATAAACTCTCAATTTTTTTTCCAAACTTCCAACTTTCCCCAAACTTTCAACTTTTTTCAGGAACTAAACACACCCCATATATGGTCTATATTTATTTATATTCAAAACTCAGTTGTTATGACTACCATTTTGTTAGGGCTGAAATGAGAACCCTCTTTTCATGATTCTAGCATATAATGAGTATATTTGACCAATCTTAGGTTTCCAAGAAGAATATTGGCGTTCACTGAAATACATGTTCAAGGAGCCACCAAACCTAGGGAAATCAGGGGGAAATCATTAGAAGGTGACTACTTTTATGAGTTTCCTGCAGTTGTTAATTATGAATTGAAAACCACATTGCAATAAATGTTCTCATCATCAAGAACATAATCTTATTGTTGCATTTGTCGCAGTAACAGTGTACTTTATTTTATAAATGTAACAGTGTACCGCTGATGCTTAGAAAATGCGTTGGAACAGAGAAAATCCCCACTCCATTTTAGTCATCCATCGCTGAACCAAACCATTCTGTTTTTCTCCTTCTATAATTGAAATGGCAGAGCTCCTGCCCATTCCCTCGAAAAAATTTTAGTCATCCATCATAGCATCATGACTTGTGGCCAAGTGTTGGCTATTTGGATCACATCATAGCACTGCAATGTAGTTAAAAATGACTAAGCACAGTTTGAACAAGAATAGCAGCTAATGTGCAACATTAGCTTCATCTATCAAAAAGCAGAATTTCAGCGAGAAGAAGCGTAAAGATGCTAAAGATATCATATATTTCTGAGCATCTTTCCCATCCTTTAGGAGTTATCATGAGGTACGAGGTACTACGAGGTACCAATCTAATCTAACCGTTGATTTAGTAGGGGTATGATCGGGCTAACAAAAAAAAAAGAGGAATGGAGAGACACCGTTGCATCGAGGCCGTCGCGCATTGAGGGGGTGTTTAGATGGGATTAAAACTTTTTAGCTCATGTCACATCGGATGTTTGGACGCTAATTTAGAGTATTAAACATAGACTAATAAAAAAACTAATTTCATAAATGAGAGCTAATCCGCGAGACGATTTTTTAAAGCCTAATTAATCCATAATTATCAAAAGTTTACTGTAGCATCACATTGTCAAAATCATGGCGTAATTAGACTCAAAAGATTCGTCTCGCGAATTAGTCCAAGATTATGGAATGAGTTTTGTAATTAGTATATGTTTAATACTCTAAATTAGTGTCCAAACATCCGATGTGACAGGGACTTGGAATAAGTCCCTGTAAACCAAACAGCCCCTGAGCCTGCTGCCGTGCCGCCGCGCATCGAGGCCGCCGTGCCGCCGCGCATCAAGGCCGCCGCGCATCTAGGCCGCTGCGCCACTGCAGTCGCACATCGAGGCTGCCTTGCTCGGAGACACCCAATTTGAGTCTGCTGATTTAATCTGAACAGAGAAATACAGGAGGAGGAAAAATAATGTCCCATAAGTGCAACTTTAATCTGAATAGAGGAAGGAATCAGGAGGAAAAACAATGCGTAACTCAAAGTACACCAGACTTGAATCGATATTATTTACAGCAGATCCAATTTCTGAACCTTGTTTTTTAGTTCATCAATACGAAACTTGCAATTCAACAGTAAGCTGGTAATCAACCATTTAGCCATTTACATTTGGTTCAGCAAACTCAACAACAAAATTCACAGCAAAAAGGAGGAAGAGAGAGGCCGTCGCTGCCGCGGCCGTCAACAATATTCACAGCAGAAAGGAGGAAGAGAGAGGCCGCCGTTGCCGCCGCCTCCGCCGCCGCGCATCGAGCTCGCCGCTGCCGCCGAGCATCGAGGCCGCTGCCGCCTCGAGCCCACAGCTGCTGCCATCGCGCATCAAGGCCGCCGCGCTGCTGCCGTCGCGCATCGAGGCCGCCGCCGGGAATGTGCCCGTGCCCTCGCCGCCATCTCTCGCTGCTCTTCCCCGACGATTTTTCCCTCTCGTGAAGGAAGCGAAACGCGAAAGAAAGAGATGCCCCACGCGAAAGTACAGAAGTACCCTTCCACCCATGATACCGCTTTAATAAGGAGGTGCAGTACCATGAGATATGAACGATTTCTGATCGTTAGATGATGCCAGATCAACGGTTAGGATTTGGTACTGCACAACCCCAAGGACAGTAAAAAACCTCTACATTTTTTACACTAGGTGAAGTAGATAAAGTGCATGATGAAAATCATTTGTTCTCATCAAGTTTTATCTTTCGCACACCATGAATATATCTTTTGCTCACATAAGTAATATATCTTTTGCACATCATGAAGTCACTAATTATTGTACAAAGAAGTCGAGCATTTCTCATTTTTAGTTATTGAACTTTTGTCCAAATTGCGTTGGTGACATGGGGTCATTTACCACTCATCCAGTAACAGTGGACCTGCAAGAACAGAAAATAATGGACATGGAGGCAATAATGAGACTTTGTATCCAAACTGAAGAGAACTATCCAGGATTTAGGAAGTTTGGTTTCTTTCAGCTTGTGGATGCTACAGATGGTTTTTCAGAGAACAGAAATGTCGGAATTGGTGGATTCGGTACTGTTTACAAGGTGATGAATGTTAGATACTCCTTGTCTACCCAAAATATGATTTGTTATAATAGAATGCTACATGAATTCTATTGCAGGGCCAGCTACTTGATGGACATACAGTTGCTATCAAAAGATTTGTTGTGGATGCAGCAATATTTGATTTCAAAAGTGAATTGCAGCTTGTAAGGCTTCAGCATACCAACCTAATTAGGTTATTGGGATGGTGCATTCATGAAAAAGAAAAGATTCTTGTGTATGAGTTCATGCAGAAAGGCAGTTTAGACAATATTATCTTCCGTAAGTTTTAAACAGTCTCTTTTTAATACGTTTTGCGAGACGGGCTTAATCCAATTCCTAATAAATGTGCACATACTAAAGCAGTTATTATGCTTCTGATAACAACACATTTGAAACACCTTTCACACACATGCACACACACAAAAGTCTGATTCCAAAACTATGTTGATTTGATAAAGAACAGTATGTAAGCAATTACTATGTTCTCTAAAGTACATTTCTTTTGCAATCATTCTACAGACAAAAGGAAGGGCGCATTGCTAAATTGGTCTAAGCGACTTCAGATAATTAAAGGGCTAGCTGAGGGGCTTCTTTACCTGCACAAGCACTGTTTGATTGTACATAGGGATTTGAAACCAAATAATATCCTCTTAGACCATGACATGAACCCAAAGATTGCTGATTTTGGATCTGCAGTAACACTGGTTTCAGATGTAGCAGAAGAGTGTACAAGGAGAGTCGTGGGAACCAGGTATGAGCTGAACAAAATATAAAGAATGGTGCAGTGCAACATATATGTTCCAGTTTTCTCATGCCTACCTCTGCTATCCATTTCCAGTGGTTACATAGCTCCGGAGTATGCATCGGAAGGCCGTTATTCGCTTAAGACAGACGTGTTTAGCTTTGGCGTCGTGGTTCTAGAAATCATTAGTGGACGAAAGAATTTCATAATGGAGAAACAAGGGGATACCGTTGGCAATCTCATTCGAGACGTGAGTATTTGTTTTAATGGTCTTCTTCTAGCAAATAGTATTTGTGTTGGGCACCTGACTAACTGTAACATATTTCAGGCATGGCATATGTGGAGAGATGGAAGGTTGCATGAGCTTGTAGACCCAGCATTGTGTGATGAATATGAAAGCCCTGTGATAATGCGATGCACTCAGGTGGCGCTTCTTTGTGCTCAAGAAGATCCAACAGAACGGCCCACAATGACAGATGTTACTAGAGTTCTGAACTCTCAAAGCATACTATTATCAGATCCAAAGAAGCCAACTGAGCTAACTGATGGAGGTGCTAGTACTGACAGGCCATCGACATATATTGGCCAGTCGAGCAAGACGATAGACATAACCATCACAAGTTCAGCTCCGGTGTCCACCAGAGTTCGCATCATTGTTGACCCAGAAATTTGATTTGAGGTGGAAAAACACCTGCTGTAGATAGAGATCGTGGTACAAAAGAGTTGTTTTGTTGAGTCGTCCATATTGGCGTGCCTTGGTGATGCAATACTGCAAGTAATGTAGATTGTGCTCCTGAGAGTGATCAGAGCTATCCACTATGTATGGTGTGTGACGCTGCCATTCAACACAAAGCTGATTATTTTACTC More
CDS seq		ATGGCGAGCGGCCTGTGGGGCGCGCTCGGGCAGGCGTCGAGCGTGGCGCAGCTGGTCGGCGTGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGACCTCGTCGGCGGCCTGCTGCGGGAGCTAGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCGGCTCCAAGGCGCGCTGCGGCGGTGCTACGCACTCGTCAGGGCGTGCCAGGATGACTGCGGCTACCTCCACCGCCTGCTCCTCGGCGCTCGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATTGACATGTACATACGCCTCATCCCTCTCATCTCTCTAGTCGACAGCAGCAACAATAATCGTCGTGTCACGGCAACCGAGGGGGTGCCCAGTGTAGTCCCAAGTTATTCAGATCATCACACAAGGTTTCCAAGAAGAATATTGGCGTTCACTGAAATACATGTTCAAGGAGCCACCAAACCTAGGGAAATCAGGGGGAAATCATTAGAAGTAACAGTGGACCTGCAAGAACAGAAAATAATGGACATGGAGGCAATAATGAGACTTTGTATCCAAACTGAAGAGAACTATCCAGGATTTAGGAAGTTTGGTTTCTTTCAGCTTGTGGATGCTACAGATGGTTTTTCAGAGAACAGAAATGTCGGAATTGGTGGATTCGGTACTGTTTACAAGGGCCAGCTACTTGATGGACATACAGTTGCTATCAAAAGATTTGTTGTGGATGCAGCAATATTTGATTTCAAAAGTGAATTGCAGCTTGTAAGGCTTCAGCATACCAACCTAATTAGGTTATTGGGATGGTGCATTCATGAAAAAGAAAAGATTCTTGTGTATGAGTTCATGCAGAAAGGCAGTTTAGACAATATTATCTTCCACAAAAGGAAGGGCGCATTGCTAAATTGGTCTAAGCGACTTCAGATAATTAAAGGGCTAGCTGAGGGGCTTCTTTACCTGCACAAGCACTGTTTGATTGTACATAGGGATTTGAAACCAAATAATATCCTCTTAGACCATGACATGAACCCAAAGATTGCTGATTTTGGATCTGCAGTAACACTGGTTTCAGATGTAGCAGAAGAGTGTACAAGGAGAGTCGTGGGAACCAGTGGTTACATAGCTCCGGAGTATGCATCGGAAGGCCGTTATTCGCTTAAGACAGACGTGTTTAGCTTTGGCGTCGTGGTTCTAGAAATCATTAGTGGACGAAAGAATTTCATAATGGAGAAACAAGGGGATACCGTTGGCAATCTCATTCGAGACGCATGGCATATGTGGAGAGATGGAAGGTTGCATGAGCTTGTAGACCCAGCATTGTGTGATGAATATGAAAGCCCTGTGATAATGCGATGCACTCAGGTGGCGCTTCTTTGTGCTCAAGAAGATCCAACAGAACGGCCCACAATGACAGATGTTACTAGAGTTCTGAACTCTCAAAGCATACTATTATCAGATCCAAAGAAGCCAACTGAGCTAACTGATGGAGGTGCTAGTACTGACAGGCCATCGACATATATTGGCCAGTCGAGCAAGACGATAGACATAACCATCACAAGTTCAGCTCCGGTGTCCACCAGAGTTCGCATCATTGTTGACCCAGAAATTTGA More
Protein seq		MASGLWGALGQASSVAQLVGVDACRRLGQHVDLVGGLLRELELAELMRREATRRPLERLQGALRRCYALVRACQDDCGYLHRLLLGARMADELRAAQHEIDMYIRLIPLISLVDSSNNNRRVTATEGVPSVVPSYSDHHTRFPRRILAFTEIHVQGATKPREIRGKSLEVTVDLQEQKIMDMEAIMRLCIQTEENYPGFRKFGFFQLVDATDGFSENRNVGIGGFGTVYKGQLLDGHTVAIKRFVVDAAIFDFKSELQLVRLQHTNLIRLLGWCIHEKEKILVYEFMQKGSLDNIIFHKRKGALLNWSKRLQIIKGLAEGLLYLHKHCLIVHRDLKPNNILLDHDMNPKIADFGSAVTLVSDVAEECTRRVVGTSGYIAPEYASEGRYSLKTDVFSFGVVVLEIISGRKNFIMEKQGDTVGNLIRDAWHMWRDGRLHELVDPALCDEYESPVIMRCTQVALLCAQEDPTERPTMTDVTRVLNSQSILLSDPKKPTELTDGGASTDRPSTYIGQSSKTIDITITSSAPVSTRVRIIVDPEI
Function		Putative cysteine-rich receptor-like protein kinase 20 [UniProtKB/Swiss-Prot:O65479]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
OsNip_06g0693000	OsNip_06t0693000-01	Chr06	28918691	28923984	+	RAP2018-11-26
CDS seq	ATGGCGAGCGGCCTGTGGGGCGCGCTCGGGCAGGCGTCGAGCGTGGCGCAGCTGGTCGGCGTGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGACCTCGTCGGCGGCCTGCTGCGGGAGCTAGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCGGCTCCAAGGCGCGCTGCGGCGGTGCTACGCACTCGTCAGGGCGTGCCAGGATGACTGCGGCTACCTCCACCGCCTGCTCCTCGGCGCTCGGATGGCCGACGAGCTCCGCGCCGCGCAGCACGAGATTGACATGTACATACGCCTCATCCCTCTCATCTCTCTAGTCGACAGCAGCAACAATAATCGTCGTGTCACGGCAACCGAGGGGGTGCCCAGTGTAGTCCCAAGTTATTCAGATCATCACACAAGGTTTCCAAGAAGAATATTGGCGTTCACTGAAATACATGTTCAAGGAGCCACCAAACCTAGGGAAATCAGGGGGAAATCATTAGAAGTAACAGTGGACCTGCAAGAACAGAAAATAATGGACATGGAGGCAATAATGAGACTTTGTATCCAAACTGAAGAGAACTATCCAGGATTTAGGAAGTTTGGTTTCTTTCAGCTTGTGGATGCTACAGATGGTTTTTCAGAGAACAGAAATGTCGGAATTGGTGGATTCGGTACTGTTTACAAGGGCCAGCTACTTGATGGACATACAGTTGCTATCAAAAGATTTGTTGTGGATGCAGCAATATTTGATTTCAAAAGTGAATTGCAGCTTGTAAGGCTTCAGCATACCAACCTAATTAGGTTATTGGGATGGTGCATTCATGAAAAAGAAAAGATTCTTGTGTATGAGTTCATGCAGAAAGGCAGTTTAGACAATATTATCTTCCACAAAAGGAAGGGCGCATTGCTAAATTGGTCTAAGCGACTTCAGATAATTAAAGGGCTAGCTGAGGGGCTTCTTTACCTGCACAAGCACTGTTTGATTGTACATAGGGATTTGAAACCAAATAATATCCTCTTAGACCATGACATGAACCCAAAGATTGCTGATTTTGGATCTGCAGTAACACTGGTTTCAGATGTAGCAGAAGAGTGTACAAGGAGAGTCGTGGGAACCAGTGGTTACATAGCTCCGGAGTATGCATCGGAAGGCCGTTATTCGCTTAAGACAGACGTGTTTAGCTTTGGCGTCGTGGTTCTAGAAATCATTAGTGGACGAAAGAATTTCATAATGGAGAAACAAGGGGATACCGTTGGCAATCTCATTCGAGACGCATGGCATATGTGGAGAGATGGAAGGTTGCATGAGCTTGTAGACCCAGCATTGTGTGATGAATATGAAAGCCCTGTGATAATGCGATGCACTCAGGTGGCGCTTCTTTGTGCTCAAGAAGATCCAACAGAACGGCCCACAATGACAGATGTTACTAGAGTTCTGAACTCTCAAAGCATACTATTATCAGATCCAAAGAAGCCAACTGAGCTAACTGATGGAGGTGCTAGTACTGACAGGCCATCGACATATATTGGCCAGTCGAGCAAGACGATAGACATAACCATCACAAGTTCAGCTCCGGTGTCCACCAGAGTTCGCATCATTGTTGACCCAGAAATTTGA More
Protein seq	MASGLWGALGQASSVAQLVGVDACRRLGQHVDLVGGLLRELELAELMRREATRRPLERLQGALRRCYALVRACQDDCGYLHRLLLGARMADELRAAQHEIDMYIRLIPLISLVDSSNNNRRVTATEGVPSVVPSYSDHHTRFPRRILAFTEIHVQGATKPREIRGKSLEVTVDLQEQKIMDMEAIMRLCIQTEENYPGFRKFGFFQLVDATDGFSENRNVGIGGFGTVYKGQLLDGHTVAIKRFVVDAAIFDFKSELQLVRLQHTNLIRLLGWCIHEKEKILVYEFMQKGSLDNIIFHKRKGALLNWSKRLQIIKGLAEGLLYLHKHCLIVHRDLKPNNILLDHDMNPKIADFGSAVTLVSDVAEECTRRVVGTSGYIAPEYASEGRYSLKTDVFSFGVVVLEIISGRKNFIMEKQGDTVGNLIRDAWHMWRDGRLHELVDPALCDEYESPVIMRCTQVALLCAQEDPTERPTMTDVTRVLNSQSILLSDPKKPTELTDGGASTDRPSTYIGQSSKTIDITITSSAPVSTRVRIIVDPEI More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.656022	0.133835	0.000000

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_02g0154200	SBH	0.418293	1.286673	1.021794
Nipponbare \| IRGSP 1.0 \| MSU	LOC_Os06g47530	SBH	0.354102	0.213662	0.050931
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0693000	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0027350	RBH	0.195047	1.082994	0.000000
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0027140	RBH	0.130020	1.095675	0.891940
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0027300	RBH	0.673116	3.547605	0.705485
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0026850	RBH	0.115142	0.000000	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0027350	RBH	1.816901	6.939420	6.334772
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0455500	RBH	2.1503595	11.5007505	9.9908995
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0026750	RBH	0.216433	0.169879	0.000000
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0437800	RBH	2.2671745	14.6814985	7.099869
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0027250	RBH	0.0	0.061900	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0027330	RBH	0.112782	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0026910	RBH	0.000000	13.318043	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0027540	RBH	0.476786	0.370502	0.119095
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0027160	RBH	0.000000	4.111788	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G027090	RBH	0.154315	0.871074	0.722812
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0027160	RBH	0.493683	11.884049	0.000000

Custom TreePlot

Powered by

© 2021- Rice Gene Index @Zhang Lab. All Rights Reserved.

National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

Any comments and suggestions, please contact us.