Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsKeNa_06g0027140 | OGI:06080980 | 16/16 | KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | Chr06:29749767-29753467 | ||||||||
| Gene Symbol | RLCK215, OsRLCK215 | ||||||||||
| DNA seq | ttcacactcgcgagtcgcgacgcatatacccgtccatggcggtggcggcaatgggcgaagcagctttcccggcggggatcggccatggcgagcggcctgtggggcgcgctcgggcaggcgtcgagcgtggcgcagctggtgggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctcgagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcggctccagggcgcgctgcgacggtgctacgcgctcgtcagggcgtgccaggaggactgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagattgacatgtacatccgcctcatccctctcatctctctcgtcgacagcagcaacaataatcgtcgtgtcacggtaagcccttgtttcatccttttttctagtaataagataatttggtggttcatcttaaaactgaagattatggcgtatcgagatggaggagaaattgctgatctctttttatgatgattcatctgatcgaagtgatatgctcaagtgatccttcctgtcaatgtttctgttgtgcacttgtacctgaattggggtacatagccatttcaacttttagtcaaacaacttgacatgtactaactgttagttctggagcataagattttccttacttgtgcactgttagttccaaaagtccactttgtgtgcaggccaatttcatgtgaatgatatctgcagttgtctagcaggcaaccgagggtgtgcccagtgtagtcccaagtagttcagatcatcacacaaggttagatattgtttcagtaccccataactgattacataatgtttctttccatatcaaatccgggagctgatgtccttatcacggtttttgggaaaaaaactgtcaacattgaaggcgaactatcgccgatattgaatattttcatgctggaaccagagaatcattgaccatatctggtctatatttatttatattcaaaactcagttgttatgactaccactttgttagggctgaaatgagaaccctcttttcatgattctagcatataatgagtatatttgaccaatcttaggtttccaagaagagtattggcgttcactgaaatacatgttcaaggagccaccaaacctagggaaattggggggaaatcattagaaggtgactacttttatgagtttcctgcagttgttaattatgaattgaaaaccacattgcaataaatgtttttatcatcaagaacataatcttatgttccatttgtcgctgtaacagtgtactttatttttataaatgtaacagtgtaccgctgatgcttagaaaatgcgttggaagttggaacagagaaaatccccactccattttagtcgtccatcgtagcatcatgacttgtgaccaagtgttggctatttgtatcacatcatagcactgcaatgtagttaaaaatgactaagcacactttgtacaagaatagcagctaatgtgcaacatcagcttcatctaacaaaaagcagaatttcagcaataagaagcatacagatgctaaagatattatacattttttacacttggtgaagtagataatgtgcatgatgaatatcatttgttctcattaagttttatcttttgcacactatcttacataagtaatatatcttttgcacatcatgaagtcactaattattgtacaaagaagtcgagtatttctcatttttagttattgaacttttgtccaaattccgttggtgacatgaggtcatttaccactcatccagtaacagtggacaagcaagaacagaaaataatggacatggaggaaataatgaaactttgtatccaaactgaagagaactatccaggatttaggaagtttggtttctttcagcttgtggatgctacagatggtttttcagagaacagaaatgtcggaattggtggattcggtactgtttacaaggtgatgaatgtatatactccttgtctacccaaaatatgatttgttataatataatgctacatgaattctattgcagggccagctacttgatggacatacagttgctatcaaaagatttgttgtggatgcagcaatatttgatttcaaaagtgaattgcagcttgtaaggcttcagcataccaacctaattaggttattgggatggtgcattcatgaaaaagaaaagattcttgtgtatgagttcatgcagaaaggcagtttagacaatattatcttctgtaagttttaaacagtctctttttaatacgttttgcgagacgggcttaatccaattcctaataaatgtgcacataataaagcagttcttatgcttctgataacaacacatttgaaacacctttcatacacatgcacacacataaaagtctgattccaaaactatgttgatttgataaagaacagtatgtaagcaattactatgttctctaaagtacatttcttttgcaatcattctacagataaaaggaagggcgcattgctaaattggtctaagcgacttcagataattaaagggctagctgaggggcttctttacctgcacaagcactgtttgattgtacatagggatttgaaaccaaataatatcctcttagaccatgacatgaacccaaagattgctgattttggatctgcggtaacactggtttcagatgtagcagaagagcgtacaaggagagtcgtgggaaccaggtatgagctgaacaaaatataaagaatgatgcagtgcaacatatatgttccagttttctcatgcctccctctgttatccatttccagtggttacatagctcctgagtatgcatcggaaggccgttattcgcttaagacagacgtgtttagctttggcgtcgtggttctagaaatcattagtggacgaaagaatttcataatggagaaacaaggggataccgttggcaatctcattcgagacgtgagtaattgttttaatggtcttcttctagcaaatagtatttgtgttgggcacctgactaactgtaacatatttcaggcatggcatatgtggagagatggaaggttgcatgagcttgtagacccagcattgtgtgatgaatatgaaagccctgtgataatgcgatgcactcaggtggcgcttctttgtgctcaagaagatccagcagatcggcccacaatgacagatgttactagagttctgaactctgaaagcatactattatcagatccaaaggagccaactgagctaactgatggaggtgctagtattgacaggccatcgacatatattggccagtcgagcaagacgatagacataaccatcacaagttcagctccggtgtccaccagagttcgcatcattgttgacccagaaatttgatttgaggtggaaaaacacctgctgtagatagagatcgtggtacaaaagagttgttttgttgagtcgtccatattggcgtgccttggtgatgcaatactgcaagtaatgtagattgtgctcctgagagtgatcagagctatccactatgtatggtgtgtgacgctgccattcaacacaaagctgattattttactca
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| CDS seq | atggcgagcggcctgtggggcgcgctcgggcaggcgtcgagcgtggcgcagctggtgggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctcgagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcggctccagggcgcgctgcgacggtgctacgcgctcgtcagggcgtgccaggaggactgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagattgacatgtacatccgcctcatccctctcatctctctcgtcgacagcagcaacaataatcgtcgtgtcacggcaaccgagggtgtgcccagtgtagtcccaagtagttcagatcatcacacaaggtttccaagaagagtattggcgttcactgaaatacatgttcaaggagccaccaaacctagggaaattggggggaaatcattagaagtaacagtggacaagcaagaacagaaaataatggacatggaggaaataatgaaactttgtatccaaactgaagagaactatccaggatttaggaagtttggtttctttcagcttgtggatgctacagatggtttttcagagaacagaaatgtcggaattggtggattcggtactgtttacaagggccagctacttgatggacatacagttgctatcaaaagatttgttgtggatgcagcaatatttgatttcaaaagtgaattgcagcttgtaaggcttcagcataccaacctaattaggttattgggatggtgcattcatgaaaaagaaaagattcttgtgtatgagttcatgcagaaaggcagtttagacaatattatcttctataaaaggaagggcgcattgctaaattggtctaagcgacttcagataattaaagggctagctgaggggcttctttacctgcacaagcactgtttgattgtacatagggatttgaaaccaaataatatcctcttagaccatgacatgaacccaaagattgctgattttggatctgcggtaacactggtttcagatgtagcagaagagcgtacaaggagagtcgtgggaaccagtggttacatagctcctgagtatgcatcggaaggccgttattcgcttaagacagacgtgtttagctttggcgtcgtggttctagaaatcattagtggacgaaagaatttcataatggagaaacaaggggataccgttggcaatctcattcgagacgcatggcatatgtggagagatggaaggttgcatgagcttgtagacccagcattgtgtgatgaatatgaaagccctgtgataatgcgatgcactcaggtggcgcttctttgtgctcaagaagatccagcagatcggcccacaatgacagatgttactagagttctgaactctgaaagcatactattatcagatccaaaggagccaactgagctaactgatggaggtgctagtattgacaggccatcgacatatattggccagtcgagcaagacgatagacataaccatcacaagttcagctccggtgtccaccagagttcgcatcattgttgacccagaaatttga
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| Protein seq | MASGLWGALGQASSVAQLVGVDALGLVSMVVQAALAARRHRDACRRLGQHVELVGGLLRELELAELMRREATRRPLERLQGALRRCYALVRACQEDCGYLHRLLLGARMADELRAAQHEIDMYIRLIPLISLVDSSNNNRRVTATEGVPSVVPSSSDHHTRFPRRVLAFTEIHVQGATKPREIGGKSLEVTVDKQEQKIMDMEEIMKLCIQTEENYPGFRKFGFFQLVDATDGFSENRNVGIGGFGTVYKGQLLDGHTVAIKRFVVDAAIFDFKSELQLVRLQHTNLIRLLGWCIHEKEKILVYEFMQKGSLDNIIFYKRKGALLNWSKRLQIIKGLAEGLLYLHKHCLIVHRDLKPNNILLDHDMNPKIADFGSAVTLVSDVAEERTRRVVGTSGYIAPEYASEGRYSLKTDVFSFGVVVLEIISGRKNFIMEKQGDTVGNLIRDAWHMWRDGRLHELVDPALCDEYESPVIMRCTQVALLCAQEDPADRPTMTDVTRVLNSESILLSDPKEPTELTDGGASIDRPSTYIGQSSKTIDITITSSAPVSTRVRIIVDPEI |
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| Function | Putative cysteine-rich receptor-like protein kinase 20 [UniProtKB/Swiss-Prot:O65479] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsKeNa_06g0027140 | OsKeNa_06g0027140.01 | Chr06 | 29749767 | 29753467 | + | NAM | ||
| CDS seq | atggcgagcggcctgtggggcgcgctcgggcaggcgtcgagcgtggcgcagctggtgggcgtggacgcgctggggctggtctccatggtcgtgcaggcggcgctggcggcgcgccgccaccgggacgcgtgccggcggctggggcagcacgtggagctcgtcggcggcctgctgcgggagctcgagctcgccgagctgatgcggcgggaggccaccaggcggcccctcgagcggctccagggcgcgctgcgacggtgctacgcgctcgtcagggcgtgccaggaggactgcggctacctccaccgcctgctcctcggcgcccggatggccgacgagctccgcgccgcgcagcacgagattgacatgtacatccgcctcatccctctcatctctctcgtcgacagcagcaacaataatcgtcgtgtcacggcaaccgagggtgtgcccagtgtagtcccaagtagttcagatcatcacacaaggtttccaagaagagtattggcgttcactgaaatacatgttcaaggagccaccaaacctagggaaattggggggaaatcattagaagtaacagtggacaagcaagaacagaaaataatggacatggaggaaataatgaaactttgtatccaaactgaagagaactatccaggatttaggaagtttggtttctttcagcttgtggatgctacagatggtttttcagagaacagaaatgtcggaattggtggattcggtactgtttacaagggccagctacttgatggacatacagttgctatcaaaagatttgttgtggatgcagcaatatttgatttcaaaagtgaattgcagcttgtaaggcttcagcataccaacctaattaggttattgggatggtgcattcatgaaaaagaaaagattcttgtgtatgagttcatgcagaaaggcagtttagacaatattatcttctataaaaggaagggcgcattgctaaattggtctaagcgacttcagataattaaagggctagctgaggggcttctttacctgcacaagcactgtttgattgtacatagggatttgaaaccaaataatatcctcttagaccatgacatgaacccaaagattgctgattttggatctgcggtaacactggtttcagatgtagcagaagagcgtacaaggagagtcgtgggaaccagtggttacatagctcctgagtatgcatcggaaggccgttattcgcttaagacagacgtgtttagctttggcgtcgtggttctagaaatcattagtggacgaaagaatttcataatggagaaacaaggggataccgttggcaatctcattcgagacgcatggcatatgtggagagatggaaggttgcatgagcttgtagacccagcattgtgtgatgaatatgaaagccctgtgataatgcgatgcactcaggtggcgcttctttgtgctcaagaagatccagcagatcggcccacaatgacagatgttactagagttctgaactctgaaagcatactattatcagatccaaaggagccaactgagctaactgatggaggtgctagtattgacaggccatcgacatatattggccagtcgagcaagacgatagacataaccatcacaagttcagctccggtgtccaccagagttcgcatcattgttgacccagaaatttga
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| Protein seq | MASGLWGALGQASSVAQLVGVDALGLVSMVVQAALAARRHRDACRRLGQHVELVGGLLRELELAELMRREATRRPLERLQGALRRCYALVRACQEDCGYLHRLLLGARMADELRAAQHEIDMYIRLIPLISLVDSSNNNRRVTATEGVPSVVPSSSDHHTRFPRRVLAFTEIHVQGATKPREIGGKSLEVTVDKQEQKIMDMEEIMKLCIQTEENYPGFRKFGFFQLVDATDGFSENRNVGIGGFGTVYKGQLLDGHTVAIKRFVVDAAIFDFKSELQLVRLQHTNLIRLLGWCIHEKEKILVYEFMQKGSLDNIIFYKRKGALLNWSKRLQIIKGLAEGLLYLHKHCLIVHRDLKPNNILLDHDMNPKIADFGSAVTLVSDVAEERTRRVVGTSGYIAPEYASEGRYSLKTDVFSFGVVVLEIISGRKNFIMEKQGDTVGNLIRDAWHMWRDGRLHELVDPALCDEYESPVIMRCTQVALLCAQEDPADRPTMTDVTRVLNSESILLSDPKEPTELTDGGASIDRPSTYIGQSSKTIDITITSSAPVSTRVRIIVDPEI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.130020 | 1.095675 | 0.891940 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0693000 | RBH | 0.656022 | 0.133835 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os06g47530 | SBH | 0.354102 | 0.213662 | 0.050931 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os06g0693000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_06g0027350 | RBH | 0.195047 | 1.082994 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_06g0026900 | RBH | 0.000000 | 1.031322 | 0.220899 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_06g0027300 | RBH | 0.673116 | 3.547605 | 0.705485 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_06g0026850 | RBH | 0.115142 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_06g0027350 | RBH | 1.816901 | 6.939420 | 6.334772 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_06G0455500 | RBH | 2.1503595 | 11.5007505 | 9.9908995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_06g0026750 | RBH | 0.216433 | 0.169879 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_06G0437800 | RBH | 2.2671745 | 14.6814985 | 7.099869 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0027250 | RBH | 0.0 | 0.061900 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_06g0027330 | RBH | 0.112782 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_06g0026910 | RBH | 0.000000 | 13.318043 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_06g0027540 | RBH | 0.476786 | 0.370502 | 0.119095 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_06g0027160 | RBH | 0.000000 | 4.111788 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_06G027090 | RBH | 0.154315 | 0.871074 | 0.722812 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_06g0027160 | RBH | 0.493683 | 11.884049 | 0.000000 |
