Rice Gene Index (RGI): a comprehensive pan-genome database for comparative and functional genomics of Asian rice.

Basic Info

Gene ID		OGI # \| Score			Accession \| Assembly \| Annotation			Location		Links
LOC_Os06g47530		OGI:06080980 \| 16/16			Nipponbare \| IRGSP 1.0 \| MSU			Chr06:28769505-28774431		Homologues MicroCollinearity RGI-JBrowse RGAP Ricevarmap2
Gene Symbol		RLCK215, OsRLCK215
DNA seq		CGGCTTCGGCTCCATCGCGGAGGAAACCGAGATGGCCGCCGCGGCGCCGTGCTCATGGACATCCGCCGCTGTGTTCATGGCTGCCGTATTCATGTCATTGCCGCGGCATCCTCCTGCAAGAAGACGCCAGCGTTTGTGGCCTTCTACCAGAAGGCCTCGCCGGAGACGGACGAGGTGGCTCTTGAGTCTTGGCAGGTTCGAGGCGTTGGAACAATGCATCGACGAGTCCAATAGCAGCTACTCCAATGTGTTCAGGAGCATTCTTCAGACAAGGGTTGCGCTGCTCAATATTCAGACAAGGATTGGAACTTGGAAGCAATGTATTCCTCCCAAGGAGATTTTGTTCCAACCCGGAGATGATTGGAGTTGCTTCTTACTGATGATTGGAGTACTAGATTATCAGTGGCTTCTTTTCACTGATGATTGAATATACTGCAATGAGATTTTTTTTCCTTCGTCACAAAGAGTACTCCTAATGAAGATTGGCACAATTGTGAATTGGGAGAACTATGTGGGGGGTCTGTAATGTGAATGTCCAAGCCAATATGTAATGTGCGGAGTGTGCATTGTATCTGTGACCACTTGAATTATGAGCAGGTGAATAAAACCAAGAAGATGCAGATGCCATCAATCAACAGCCAATTGTCAAAGAGATGCTATGTGTGGTAACAGAGTGCTGAATTTGGTCTGAATTTATCTCTGAATTTTACCAAATGTTCTTTCTGAATTTAGTCCAGCCCGACCTTCTCACTGAATTTGACCATATGTTCAACATTTATGTCGAATGTGCACTAATGAGCAGCATACATGCATTCAAGTACTCCAGCCATTAATTATACTCCAGTTCACATATTGCACAGTTTTTCAGAAATCTTCAGAAACCATCAATTATATGTACAAAAATCTTCAGAATTACTCCAATGGAGTAATTAAACAGTAAGTATCTCTAGAGGAAGAACAAGTTCACCAAGACTGAAGAATACTAGCACTGTATCAGAAAATGGACAATAACAAGGTTATGGCTTGACTGAATCTGAATATATCAACTTGACTGAATCCGCTTATATCGGAGGAGGCGGGGCAGCGGTAGCATGGGGGAGATGACGATCGAGTCGGCATCGAGGAAGACAGCAGCGCCGCGCTGGGCAGCACAAGGAAGAAGTGCACCGCGCCACGGGTTCCTACAGCTGGTGGTTGTTTTTTTTTTTCTCAAATCAAATCTCTGGTTCAACAATGATGCGAACTCTGGTTGAAACCGGAGCTGAACTTGTGATGGTTATGTCTATCGCCTTGCTTGAGTGACCAATATATGTCGATGACCTGTCAGGACTGGCGCACCTCCATGAGTAAGCTCAGTTGGCTCCTTTGGATCTGATAGCATTATGCTTTCAGAGTCAAGCATTGCAGTAACATCTGTCATGGTGGGCCGATCGGCTGGATCTTCCTGAGCACAAAGAAGCGCCACCTGCGTGCATCGCATTATCACGGTGCTTTCATATCCATCACACAGTGCTGGATCAACGAGCTCTTGCAACCTTCCGTCTTTCCACATATGCCATGCCTGAAACATGTTGCAATCTGTCAAGTGTGTAACACAAATCTGTATGCTAGAAGAAGACCATAAGAAAAAGTGTATCATTGAACTGTATCTTCACTCACATCTCGAACGAGATAGCCAACAATATCCCTCTGTTTCTCCATTATGAAATTCTTTCGTCCACTAATAGTTTCTAGAACCACGACACCGAAGCTAAATACATCTGTCTTAAGTGAATAAAGGCCTTGAGATGCATACTCTGGAGCTATGTAACCACTGGAAATAGATATCACAAGGCATGAGAAAACTGGAACATATATGTAACAGTGCACCATTCGTTATATTTTGTTCAGCTCCGTACCTGGTTCCCACGACTCTCTTTGTACGCTCTTCTGCTACATCTGAAACCAGTGTTACCGCCGATCCAAAATCACCAATCTTTGGGTTCATGTCATGGTCTAAGAGGATGTTACTTGGTTTCAAGTCTCTATGTACAATCCAACAGTGCTTGTGCAGGTAAAGAAGCCCCTCAGCTAGCCCTTTAATTATCTGAAATCGCTTGGACCAATTTAGCAATGCCCCCTTCGTTTTATCTGTGGAATGTTTGCACAATACATACACTTGAGAGAAAATAGTACTCCCTCCGTTTCACAATGTAAGTCATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAAACATATGTATGTGCTAGATTCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTGAAACGGAGGAAGTAATTGTTACATGCTGTTCTACATCAAATTAACATAGTTTCTAATCAGTTGTTATCAGAAGCATAGCAACATTCAAGTGATATCCAACTCCCCTTTGGTAAGAGTTGCTTTACATTCGCAAGCATATTTATTAGAAACTGTATTAGGTCTGATTGCAAAAAATAAAATAAAGGTCTTGTGTGCAACTTACGGAAGATAATATTGTGCAAACTGCCTTTCTGAATGTACTCATATACAAGGATCCTTTCTTTTTCATGGATGCACCACCCCAATAACCTAATTAGATTGGTATGCTGAATCCTTACAAGCTGCAATTCACTTTTCAAATCAAATATTGCTGTATCAGCATCAAATGTCTTTATGGCAACTGTAAGTCCATCAAGCAAGTGGCCCTGCAATGGAGTTACCAATAGCTAGAGTTTATGCGGCATTCTCTGATGATAGAATATATTTTGTGTAGACAAGGAGTATATATGTGTTTATCACCTTGTAAACAGTACCAAATCCACCCTTTCCAAGTATTCTCTTCTCGGAAAAACCATCTGTAGCATCCACAATCTGAATGAAATCGAACTTCCTAAATCCTGGGTAGTTCTCTTCAGTATGGACAAAAAGTTTCAGTACTGCCTCGATATCCATTATTTTTTCTTCTTGCGGTTGCGGGTCCACTGTTACTGAATGAGGGTTAACACTAAAATGAGAAATGCTCAGCTTCTTCATACAATAACTAATGACTTCATACTGAGCAAAAGATATAAAACTTGTGTTATCAAACTCCTTTTCGAAAAACTTAACAAGAATAGACGTAGAATAATGAGAAAAAATGATATTCATCGTGCATAAGTATCTATCAATGTGAAAATGTTGATAACTTCAGCATTTGCTTGCTTCTTCTCGCTGAAGTTTTGCAAAATTTTTATCAGCTGAAGCTGATGTTGCACATTAGCTGGTATCGTGTTACGAGTACTTAATCATCTTTAAGTCTTTAACCACATTGCAATGTTATATCCTTTCAAAAAACATTGCAATGTTATAATAAGATCCAAATACCCAATACTTGGTCATGATCATAAGCTATAATGTCTGACTAAAATGAAATAGGGATTTTCTCTGTTTGAACAAATTTCTAAGTGTGCGCTATTACATTTGTTTTGACTCTTATATTCTTGCTTGTAAGTCCATTTATTAAAGTGTGCCTTTTTAAATCATTATTAACAAATGTAGGAAATTTGTAGATGTAGTTACCTACTAATGATTTTCCCCCAATTTCACTAGGTTTGGCCGCTCCTTGAACATGTAATTCAATGAACTCCAATGCTCTTCTTTGAAACCTAAAATTGGGCAAATATACCCGTTAATGTCAAAACCATAAAACAAAGGTCCTGATTTCGCCCTAAAAACTGGTATATTCACAACAGCTGAACTATTAACATAGATAAATTTGATATCGTTACAATTATGATCAATTAGTAATCAACCAGATATCTTCAATAATTCTCTGGTGTTTAAAATAACCCAATATAAGTGGTGTTTCCTCATCAATATCACCATTTTGTCAAGACGCGATAAGGACATCAGGTCCTTGATTTAGCATATAAAGAAACATTTTTTGAGCAATCAATTATGTACTGAAACAGTATATACACCTAACCTTGTGTGATGGTCTGAACAGCTTGGGACTACAGCACGCACCCCCTCGGTTGCCTGCTAGACAAGAACAGTGAAAACTACATATATCATTCACAGGCAATTTGCCTGCATATAAAGTGGACTTTTGGAACTAACAGTGGACAAGTAAGGAAAATCATATGAATGCAGAACTATTAATTACTCCATGTAAAGTTGTTTGTATGAAAGTCAAAATCGGTATGTAGTATGTACCCCGGTATCCCCAAGTCCCCAATTCAGGTACAAATGCACAACAGAAACATTGACAGAATCACTTTGAACAAATCACTTCGATCAGATGAATCATCATAAAAGAATCTGCAATTTCTCATTCATCTCCGTACGACCATACGCCATAATCTTCAGTTTTAAGACGAACCAACGAAATTATCTAATTACTAGCAAAAGTTGAAACAGGCTTACTGTGACACGACGATTGCTGCTGCTGTTATCGACGAGAGCGATGAGAGGGATGAGGCGGATGTACATGTCGATCTCGTGCTGCGCGGCGCGGAGCTCGTTGGCCATCCGGGCGCCGAGGAGCAGGCGGTGGAGGTAGCCGCGGTCCTCCTGGCACGCCGTGACGAGCGCGTAGCACCGCCGCAGCGCGCCCTGGAGCTGCTCGAGGGGCCGCCTGGTGGCCTCCCGCCGCATCAGCTCGGCGAGCTCCAGCTCCCACAGCAGGCCGCCGACGAGCTCCACGTGCTGCCCCAGCCGCCGGCACGCGTCCCGGTGGCGGCGCGCCGCCAGCGCCGCCTGCACCACCATGGAGACCAGCCCGAGCGCGTCGACGCCGACCAGCTGCGCCACGTTCGACGCCTGCCCAAGCACGCCCCACAGGCTGCTGCTCTCCATGGCGTTGCGCTCCCCGCGCAACGCCGCCGCGACCGCAACTACCCGATGTCTCGCCGCTTCGGCCGTTGCCGGCTTGCCGCC More
CDS seq		ATGGAGAGCAGCAGCCTGTGGGGCGTGCTTGGGCAGGCGTCGAACGTGGCGCAGCTGGTCGGCGTCGACGCGCTCGGGCTGGTCTCCATGGTGGTGCAGGCGGCGCTGGCGGCGCGCCGCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGAGCTCGTCGGCGGCCTGCTGTGGGAGCTGGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCAGCTCCAGGGCGCGCTGCGGCGGTGCTACGCGCTCGTCACGGCGTGCCAGGAGGACCGCGGCTACCTCCACCGCCTGCTCCTCGGCGCCCGGATGGCCAACGAGCTCCGCGCCGCGCAGCACGAGATCGACATGTACATCCGCCTCATCCCTCTCATCGCTCTCGTCGATAACAGCAGCAGCAATCGTCGTGTCACAGCAACCGAGGGGGTGCGTGCTGTAGTCCCAAGCTGTTCAGACCATCACACAAGGTTTCAAAGAAGAGCATTGGAGTTCATTGAATTACATGTTCAAGGAGCGGCCAAACCTAGTGAAATTGGGGGAAAATCATTAGTAGTAACAGTGGACCCGCAACCGCAAGAAGAAAAAATAATGGATATCGAGGCAGTACTGAAACTTTTTGTCCATACTGAAGAGAACTACCCAGGATTTAGGAAGTTCGATTTCATTCAGATTGTGGATGCTACAGATGGTTTTTCCGAGAAGAGAATACTTGGAAAGGGTGGATTTGGTACTGTTTACAAGGGCCACTTGCTTGATGGACTTACAGTTGCCATAAAGACATTTGATGCTGATACAGCAATATTTGATTTGAAAAGTGAATTGCAGCTTGTAAGGATTCAGCATACCAATCTAATTAGGTTATTGGGGTGGTGCATCCATGAAAAAGAAAGGATCCTTGTATATGAGTACATTCAGAAAGGCAGTTTGCACAATATTATCTTCCTGTATGTATTGTGCAAACATTCCACAGATAAAACGAAGGGGGCATTGCTAAATTGGTCCAAGCGATTTCAGATAATTAAAGGGCTAGCTGAGGGGCTTCTTTACCTGCACAAGCACTGTTGGATTGTACATAGAGACTTGAAACCAAGTAACATCCTCTTAGACCATGACATGAACCCAAAGATTGGTGATTTTGGATCGGCGGTAACACTGGTTTCAGATGTAGCAGAAGAGCGTACAAAGAGAGTCGTGGGAACCAGTGGTTACATAGCTCCAGAGTATGCATCTCAAGGCCTTTATTCACTTAAGACAGATGTATTTAGCTTCGGTGTCGTGGTTCTAGAAACTATTAGTGGACGAAAGAATTTCATAATGGAGAAACAGAGGGATATTGTTGGCTATCTCGTTCGAGATGCATGGCATATGTGGAAAGACGGAAGGTTGCAAGAGCTCGTTGATCCAGCACTGTGTGATGGATATGAAAGCACCGTGATAATGCGATGCACGCAGGTGGCGCTTCTTTGTGCTCAGGAAGATCCAGCCGATCGGCCCACCATGACAGATGTTACTGCAATGCTTGACTCTGAAAGCATAATGCTATCAGATCCAAAGGAGCCAACTGAGCTTACTCATGGAGGTGCGCCAGTCCTGACAGGTCATCGACATATATTGGTCACTCAAGCAAGGCGATAG More
Protein seq		MESSSLWGVLGQASNVAQLVGVDALGLVSMVVQAALAARRHRDACRRLGQHVELVGGLLWELELAELMRREATRRPLEQLQGALRRCYALVTACQEDRGYLHRLLLGARMANELRAAQHEIDMYIRLIPLIALVDNSSSNRRVTATEGVRAVVPSCSDHHTRFQRRALEFIELHVQGAAKPSEIGGKSLVVTVDPQPQEEKIMDIEAVLKLFVHTEENYPGFRKFDFIQIVDATDGFSEKRILGKGGFGTVYKGHLLDGLTVAIKTFDADTAIFDLKSELQLVRIQHTNLIRLLGWCIHEKERILVYEYIQKGSLHNIIFLYVLCKHSTDKTKGALLNWSKRFQIIKGLAEGLLYLHKHCWIVHRDLKPSNILLDHDMNPKIGDFGSAVTLVSDVAEERTKRVVGTSGYIAPEYASQGLYSLKTDVFSFGVVVLETISGRKNFIMEKQRDIVGYLVRDAWHMWKDGRLQELVDPALCDGYESTVIMRCTQVALLCAQEDPADRPTMTDVTAMLDSESIMLSDPKEPTELTHGGAPVLTGHRHILVTQARR
Function		Cysteine-rich receptor-like protein kinase 10 [UniProtKB/Swiss-Prot:Q8GYA4]

Transcripts

Gene	Transcript	Chromosome	Start	End	Strand	Source
LOC_Os06g47530	LOC_Os06g47530.1	Chr06	28769505	28774431	-	MSU_osa1r7
CDS seq	ATGGAGAGCAGCAGCCTGTGGGGCGTGCTTGGGCAGGCGTCGAACGTGGCGCAGCTGGTCGGCGTCGACGCGCTCGGGCTGGTCTCCATGGTGGTGCAGGCGGCGCTGGCGGCGCGCCGCCACCGGGACGCGTGCCGGCGGCTGGGGCAGCACGTGGAGCTCGTCGGCGGCCTGCTGTGGGAGCTGGAGCTCGCCGAGCTGATGCGGCGGGAGGCCACCAGGCGGCCCCTCGAGCAGCTCCAGGGCGCGCTGCGGCGGTGCTACGCGCTCGTCACGGCGTGCCAGGAGGACCGCGGCTACCTCCACCGCCTGCTCCTCGGCGCCCGGATGGCCAACGAGCTCCGCGCCGCGCAGCACGAGATCGACATGTACATCCGCCTCATCCCTCTCATCGCTCTCGTCGATAACAGCAGCAGCAATCGTCGTGTCACAGCAACCGAGGGGGTGCGTGCTGTAGTCCCAAGCTGTTCAGACCATCACACAAGGTTTCAAAGAAGAGCATTGGAGTTCATTGAATTACATGTTCAAGGAGCGGCCAAACCTAGTGAAATTGGGGGAAAATCATTAGTAGTAACAGTGGACCCGCAACCGCAAGAAGAAAAAATAATGGATATCGAGGCAGTACTGAAACTTTTTGTCCATACTGAAGAGAACTACCCAGGATTTAGGAAGTTCGATTTCATTCAGATTGTGGATGCTACAGATGGTTTTTCCGAGAAGAGAATACTTGGAAAGGGTGGATTTGGTACTGTTTACAAGGGCCACTTGCTTGATGGACTTACAGTTGCCATAAAGACATTTGATGCTGATACAGCAATATTTGATTTGAAAAGTGAATTGCAGCTTGTAAGGATTCAGCATACCAATCTAATTAGGTTATTGGGGTGGTGCATCCATGAAAAAGAAAGGATCCTTGTATATGAGTACATTCAGAAAGGCAGTTTGCACAATATTATCTTCCTGTATGTATTGTGCAAACATTCCACAGATAAAACGAAGGGGGCATTGCTAAATTGGTCCAAGCGATTTCAGATAATTAAAGGGCTAGCTGAGGGGCTTCTTTACCTGCACAAGCACTGTTGGATTGTACATAGAGACTTGAAACCAAGTAACATCCTCTTAGACCATGACATGAACCCAAAGATTGGTGATTTTGGATCGGCGGTAACACTGGTTTCAGATGTAGCAGAAGAGCGTACAAAGAGAGTCGTGGGAACCAGTGGTTACATAGCTCCAGAGTATGCATCTCAAGGCCTTTATTCACTTAAGACAGATGTATTTAGCTTCGGTGTCGTGGTTCTAGAAACTATTAGTGGACGAAAGAATTTCATAATGGAGAAACAGAGGGATATTGTTGGCTATCTCGTTCGAGATGCATGGCATATGTGGAAAGACGGAAGGTTGCAAGAGCTCGTTGATCCAGCACTGTGTGATGGATATGAAAGCACCGTGATAATGCGATGCACGCAGGTGGCGCTTCTTTGTGCTCAGGAAGATCCAGCCGATCGGCCCACCATGACAGATGTTACTGCAATGCTTGACTCTGAAAGCATAATGCTATCAGATCCAAAGGAGCCAACTGAGCTTACTCATGGAGGTGCGCCAGTCCTGACAGGTCATCGACATATATTGGTCACTCAAGCAAGGCGATAG More
Protein seq	MESSSLWGVLGQASNVAQLVGVDALGLVSMVVQAALAARRHRDACRRLGQHVELVGGLLWELELAELMRREATRRPLEQLQGALRRCYALVTACQEDRGYLHRLLLGARMANELRAAQHEIDMYIRLIPLIALVDNSSSNRRVTATEGVRAVVPSCSDHHTRFQRRALEFIELHVQGAAKPSEIGGKSLVVTVDPQPQEEKIMDIEAVLKLFVHTEENYPGFRKFDFIQIVDATDGFSEKRILGKGGFGTVYKGHLLDGLTVAIKTFDADTAIFDLKSELQLVRIQHTNLIRLLGWCIHEKERILVYEYIQKGSLHNIIFLYVLCKHSTDKTKGALLNWSKRFQIIKGLAEGLLYLHKHCWIVHRDLKPSNILLDHDMNPKIGDFGSAVTLVSDVAEERTKRVVGTSGYIAPEYASQGLYSLKTDVFSFGVVVLETISGRKNFIMEKQRDIVGYLVRDAWHMWKDGRLQELVDPALCDGYESTVIMRCTQVALLCAQEDPADRPTMTDVTAMLDSESIMLSDPKEPTELTHGGAPVLTGHRHILVTQARR More

Event Type

Chromosome

Start

End

Strand

Alternative mRNAs

Total mRNAs

Source

Expression

	Leaf	Root	Panicle
FPKM	0.354102	0.213662	0.050931

Homologues

Genome & Annotation	Homologs	Type	Expression(FPKM)
Genome & Annotation	Homologs	Type	Leaf	Root	Panicle
Nipponbare \| IRGSP 1.0 \| Gramene(+IsoSeq)	OsNip_06g0690200	RBH	0.606404	0.363751	0.277930
Nipponbare \| IRGSP 1.0 \| MSU	NA	NA	NA	NA	NA
Nipponbare \| IRGSP 1.0 \| RAP-db	Os06g0690200	RBH	None	None	None
Azucena \| AzucenaRS1 \| Gramene(+IsoSeq)	OsAzu_06g0027100	RBH	0.000000	9.286549	0.659674
KETAN NANGKA \| Os128077RS1 \| Gramene(+IsoSeq)	OsKeNa_06g0026900	RBH	0.000000	1.031322	0.220899
CHAO MEO \| Os132278RS1 \| Gramene(+IsoSeq)	OsCMeo_06g0027090	RBH	0.0	0.0	1.701716
ARC 10497 \| Os117425RS1 \| Gramene(+IsoSeq)	OsARC_06g0026660	RBH	0.022067	0.042817	None
PR 106 \| Os127742RS1 \| Gramene(+IsoSeq)	OsPr106_06g0027130	RBH	1.996305	0.000000	1.860481
Minghui 63 \| MH63RS3 \| HZAU	OsMH63_06G0452600	RBH	0.196137	6.4407735	1.5464705
IR 64 \| OsIR64RS1 \| Gramene(+IsoSeq)	OsIR64_06g0026540	RBH	0.000000	0.075801	0.042682
Zhenshan 97 \| ZS97RS3 \| HZAU	OsZS97_06G0434700	RBH	0.982391	14.224267	3.1795545
LIMA \| Os127564RS1 \| Gramene(+IsoSeq)	OsLima_06g0027010	RBH	0.028776	0.0	None
KHAO YAI GUANG \| Os127518RS1 \| Gramene(+IsoSeq)	OsKYG_06g0027330	RBH	0.112782	0.000000	None
GOBOL SAIL \| Os132424RS1 \| Gramene(+IsoSeq)	OsGoSa_06g0026700	RBH	0.000000	1.364609	None
LIU XU \| Os125827RS1 \| Gramene(+IsoSeq)	OsLiXu_06g0027350	RBH	0.000000	0.062501	0.058065
LARHA MUGAD \| Os125619RS1 \| Gramene(+IsoSeq)	OsLaMu_06g0026960	RBH	0.0	0.000000	None
N22 \| OsN22RS2 \| Gramene(+IsoSeq)	OsN22_06G026860	RBH	0.000000	0.000000	0.380733
NATEL BORO \| Os127652RS1 \| Gramene(+IsoSeq)	OsNaBo_06g0027160	RBH	0.493683	11.884049	0.000000

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National Key Laboratory of Crop Genetic Improvement

Huazhong Agricultural University

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