Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_04g0419900 | OGI:04064690 | 11/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr04:20758076-20760630 | ||||||||
| Gene Symbol | YK18, SDRLK-52, SDRLK-27 | ||||||||||
| DNA seq | ATTCTTTAGCCAACGCTCGATGCCATCTCACCGGGACAAGAGCTCGCCGCCGGCGACAAGCTCGTGTCCAGCAATGGCAGGTTCGCCCTCGGCTTCTTCCAAACCGACAGTAACAAGTCCTCCTCCAATAGCACTCCGAACATTTACCTAGGCATCTGGTTCAACACCGTCCCCAAATTCACCCCTGTATGGGTTGCCAACGGCGAAAACCCTGTCGCGGATCTCGCGTCGTGCAAGCTCCTAGTTTCCAGCGATGGCAACCTCGCCATCGTTGCAACGACCCATGCCAAGAACTCCTCCATGGTCTGGTCCAGCAAAGCCAACATCCCAACCAACACCACCCATGCTGTTCTCCTGGACGATGGAAACCTTGTCCTGCGTAGCACTAGCACAACCAATGCATCATCCACCATTCTCTGGCAAAGCTTTGATCACCCGACAGACACTGTTCTGCAGGGTGGAAAGATCGGCTGGAACAACGCCACCGGTGTGAACCGCCGTCTTGTCTCCAGGAAGAACACCGTTGATCAAGCTCCTGGCATGTATTCCTTCGAGTTGCTCGGACACAACGGCCCTACCTCCATGGTCTCCACGTTCAACTCCTCGAATCCGTATTGGTCCAGCGGAGACTGGAACGGCCGGTACTTCAGCAACATACCGGAGACGGTAGGACAGACATGGCTATCACTGAATTTTACAAGCAATGAGCAAGAGAAGTATATCGAGTATGCAATTGCAGATCCCACGGTGCTATCACGTACCATACTGGATGTCTCCGGCCAGCTGAAGGCGCTTGTGTGGTTCGAGGGGTCGCGGGATTGGCAAACCATCTTCACGGCACCCAAATCGCAGTGCGATGTCTACGCTTTCTGTGGACCTTTCACGGTCTGCAACGACATCACATTCCCCTCCTGCACCTGCATGAAGGGCTTCTCAGTACAATCACCTGAAGATTGGGAGCTAGATGACCGAACAGGTGGATGTGTGAGAAATACTCCGCTGCTCTGCAACAGCAATAAAACTGCAGCAGGCACGGCAGATAAGTTCTATCCTATGACTTCTGTTCAGCTTCCTGATAAAGCCCAGAGCATAGGAGCAGCTACTAGTGCAGATGAATGTGCAGCTGCCTGCCTCAGTAGCTGCTCATGTACTGCGTATTCCTACGGTGAAGGTGGCTGCTCTGTTTGGCATGACAAGCTGCTCAATGTACGACAACAAGGTAATGGTGTTCTCTACCTTCGCCTTTCTGCAAAAGAAGTACTGGAAAGTAGGAGAAACAATAGATGGGGGGTGATCCTTGGTGCTTCAATTGGTGCCAGCACTGCTGCTTTGGGTTTGATCTTTCTGCTGATGATTTGGATCAGAAAAGGGAAGAGATATAACCTCACAATGGATAATGTTCAGGGAGGCATGGGAATCATTGCATTTAGATACGTTGATCTCCAGCATGCAACTAAAAATTTTTCGGAGAAGTTGGGGGCCGGCAGTTTTGGTTCTGTATTTAAGGGGTCGCTAAGTGACTCGACTATCATAGCAGTGAAAAGGCTTGATGGTGCTCGCCAAGGAGAGAAGCAATTCAGAGCTGAAGTGAGTTCCATAGGGATAATCCAGCATGTAAACTTGGTTAAACTGATTGGGTTTTGCTGCGAAGGTGACAGGAGGTTACTTGTTTATGAACACATGCCAAAGAGTTCTCTTGATGCCCATCTCTTCCCAAGCAGTGGTGCAGTTTTGAGTTGGACTATTAGGTACCAAATAGCCCTCGGAGTTGCAAGAGGACTAGCTTATTTGCATTCTAGTTGCCGAGACTGCATTATACACTGTGATATCAAACCAGAGAACATACTTCTTGATTCATCTTTCACTCCTAAAGTTGCAGACTTTGGAATGGCAAAGTTTCTCGGAAGGGATTTCAGTCATGTCGTAACTACAATGAGAGGAACCATAGGATATCTTGCTCCTGAGTGGATAAGCGGAACAGCTATCACATCAAAAGTGGACGTTTACAGCTATGGAATGGTTTTGTTAGAAATCATTTCAGGAAGCAGGAACTCCAGTAAACAATCTTCGCGTGATGGCGTGCATGAAGCTTGTTTCCCCGTGCAAGTTGCACGCAATCTTCTGAACAGAGACATTGACAGTCTGGTGGATGCAAACTTGCATGGTGAAGTGAAACTGGAGCAGGTTGAAAGAGTTTGCAAAGTCGCATGTTGGTGTATTCAAGACAATGAGTTTGATCGACCCACAATGAGTGAGGTACTACAGTTTCTCGAGGGTCTATCTGAAGTTGAGACACCTCCAATGCCAAGATTGCTTCATACTCTTGCAGGAGGTTTAGATTCGAAAATAATGTAATCACTAGTTTTGATCGTTGTTCGTTCACCTAGGTAGTTCTACACGTCACATTTCTCATCTGCCGTTTATATCGTAAGCTTCCTTGCCGCTTCATTATGCCACCCTTGTAATGATTGTAACCATTATTCCCACTCCCAGCAGATTGTTAAACTTACGTGTTACATCCTAATAAATCAGGGGGAAACTTGACCTTTGGTCTG
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| CDS seq | CCAACGCTCGATGCCATCTCACCGGGACAAGAGCTCGCCGCCGGCGACAAGCTCGTGTCCAGCAATGGCAGGTTCGCCCTCGGCTTCTTCCAAACCGACAGTAACAAGTCCTCCTCCAATAGCACTCCGAACATTTACCTAGGCATCTGGTTCAACACCGTCCCCAAATTCACCCCTGTATGGGTTGCCAACGGCGAAAACCCTGTCGCGGATCTCGCGTCGTGCAAGCTCCTAGTTTCCAGCGATGGCAACCTCGCCATCGTTGCAACGACCCATGCCAAGAACTCCTCCATGGTCTGGTCCAGCAAAGCCAACATCCCAACCAACACCACCCATGCTGTTCTCCTGGACGATGGAAACCTTGTCCTGCGTAGCACTAGCACAACCAATGCATCATCCACCATTCTCTGGCAAAGCTTTGATCACCCGACAGACACTGTTCTGCAGGGTGGAAAGATCGGCTGGAACAACGCCACCGGTGTGAACCGCCGTCTTGTCTCCAGGAAGAACACCGTTGATCAAGCTCCTGGCATGTATTCCTTCGAGTTGCTCGGACACAACGGCCCTACCTCCATGGTCTCCACGTTCAACTCCTCGAATCCGTATTGGTCCAGCGGAGACTGGAACGGCCGGTACTTCAGCAACATACCGGAGACGGTAGGACAGACATGGCTATCACTGAATTTTACAAGCAATGAGCAAGAGAAGTATATCGAGTATGCAATTGCAGATCCCACGGTGCTATCACGTACCATACTGGATGTCTCCGGCCAGCTGAAGGCGCTTGTGTGGTTCGAGGGGTCGCGGGATTGGCAAACCATCTTCACGGCACCCAAATCGCAGTGCGATGTCTACGCTTTCTGTGGACCTTTCACGGTCTGCAACGACATCACATTCCCCTCCTGCACCTGCATGAAGGGCTTCTCAGTACAATCACCTGAAGATTGGGAGCTAGATGACCGAACAGGTGGATGTGTGAGAAATACTCCGCTGCTCTGCAACAGCAATAAAACTGCAGCAGGCACGGCAGATAAGTTCTATCCTATGACTTCTGTTCAGCTTCCTGATAAAGCCCAGAGCATAGGAGCAGCTACTAGTGCAGATGAATGTGCAGCTGCCTGCCTCAGTAGCTGCTCATGTACTGCGTATTCCTACGGTGAAGGTGGCTGCTCTGTTTGGCATGACAAGCTGCTCAATGTACGACAACAAGGTAATGGTGTTCTCTACCTTCGCCTTTCTGCAAAAGAAGTACTGGAAAGTAGGAGAAACAATAGATGGGGGGTGATCCTTGGTGCTTCAATTGGTGCCAGCACTGCTGCTTTGGGTTTGATCTTTCTGCTGATGATTTGGATCAGAAAAGGGAAGAGATATAACCTCACAATGGATAATGTTCAGGGAGGCATGGGAATCATTGCATTTAGATACGTTGATCTCCAGCATGCAACTAAAAATTTTTCGGAGAAGTTGGGGGCCGGCAGTTTTGGTTCTGTATTTAAGGGGTCGCTAAGTGACTCGACTATCATAGCAGTGAAAAGGCTTGATGGTGCTCGCCAAGGAGAGAAGCAATTCAGAGCTGAAGTGAGTTCCATAGGGATAATCCAGCATGTAAACTTGGTTAAACTGATTGGGTTTTGCTGCGAAGGTGACAGGAGGTTACTTGTTTATGAACACATGCCAAAGAGTTCTCTTGATGCCCATCTCTTCCCAAGCAGTGGTGCAGTTTTGAGTTGGACTATTAGGTACCAAATAGCCCTCGGAGTTGCAAGAGGACTAGCTTATTTGCATTCTAGTTGCCGAGACTGCATTATACACTGTGATATCAAACCAGAGAACATACTTCTTGATTCATCTTTCACTCCTAAAGTTGCAGACTTTGGAATGGCAAAGTTTCTCGGAAGGGATTTCAGTCATGTCGTAACTACAATGAGAGGAACCATAGGATATCTTGCTCCTGAGTGGATAAGCGGAACAGCTATCACATCAAAAGTGGACGTTTACAGCTATGGAATGGTTTTGTTAGAAATCATTTCAGGAAGCAGGAACTCCAGTAAACAATCTTCGCGTGATGGCGTGCATGAAGCTTGTTTCCCCGTGCAAGTTGCACGCAATCTTCTGAACAGAGACATTGACAGTCTGGTGGATGCAAACTTGCATGGTGAAGTGAAACTGGAGCAGGTTGAAAGAGTTTGCAAAGTCGCATGTTGGTGTATTCAAGACAATGAGTTTGATCGACCCACAATGAGTGAGGTACTACAGTTTCTCGAGGGTCTATCTGAAGTTGAGACACCTCCAATGCCAAGATTGCTTCATACTCTTGCAGGAGGTTTAGATTCGAAAATAATGTAA
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| Protein seq | PTLDAISPGQELAAGDKLVSSNGRFALGFFQTDSNKSSSNSTPNIYLGIWFNTVPKFTPVWVANGENPVADLASCKLLVSSDGNLAIVATTHAKNSSMVWSSKANIPTNTTHAVLLDDGNLVLRSTSTTNASSTILWQSFDHPTDTVLQGGKIGWNNATGVNRRLVSRKNTVDQAPGMYSFELLGHNGPTSMVSTFNSSNPYWSSGDWNGRYFSNIPETVGQTWLSLNFTSNEQEKYIEYAIADPTVLSRTILDVSGQLKALVWFEGSRDWQTIFTAPKSQCDVYAFCGPFTVCNDITFPSCTCMKGFSVQSPEDWELDDRTGGCVRNTPLLCNSNKTAAGTADKFYPMTSVQLPDKAQSIGAATSADECAAACLSSCSCTAYSYGEGGCSVWHDKLLNVRQQGNGVLYLRLSAKEVLESRRNNRWGVILGASIGASTAALGLIFLLMIWIRKGKRYNLTMDNVQGGMGIIAFRYVDLQHATKNFSEKLGAGSFGSVFKGSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDVYSYGMVLLEIISGSRNSSKQSSRDGVHEACFPVQVARNLLNRDIDSLVDANLHGEVKLEQVERVCKVACWCIQDNEFDRPTMSEVLQFLEGLSEVETPPMPRLLHTLAGGLDSKIM |
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| Function | G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [UniProtKB/Swiss-Prot:O64477] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_04g0419900 | OsNip_04t0419900-01 | Chr04 | 20758076 | 20760630 | + | RAP2018-11-26 | ||
| CDS seq | CCAACGCTCGATGCCATCTCACCGGGACAAGAGCTCGCCGCCGGCGACAAGCTCGTGTCCAGCAATGGCAGGTTCGCCCTCGGCTTCTTCCAAACCGACAGTAACAAGTCCTCCTCCAATAGCACTCCGAACATTTACCTAGGCATCTGGTTCAACACCGTCCCCAAATTCACCCCTGTATGGGTTGCCAACGGCGAAAACCCTGTCGCGGATCTCGCGTCGTGCAAGCTCCTAGTTTCCAGCGATGGCAACCTCGCCATCGTTGCAACGACCCATGCCAAGAACTCCTCCATGGTCTGGTCCAGCAAAGCCAACATCCCAACCAACACCACCCATGCTGTTCTCCTGGACGATGGAAACCTTGTCCTGCGTAGCACTAGCACAACCAATGCATCATCCACCATTCTCTGGCAAAGCTTTGATCACCCGACAGACACTGTTCTGCAGGGTGGAAAGATCGGCTGGAACAACGCCACCGGTGTGAACCGCCGTCTTGTCTCCAGGAAGAACACCGTTGATCAAGCTCCTGGCATGTATTCCTTCGAGTTGCTCGGACACAACGGCCCTACCTCCATGGTCTCCACGTTCAACTCCTCGAATCCGTATTGGTCCAGCGGAGACTGGAACGGCCGGTACTTCAGCAACATACCGGAGACGGTAGGACAGACATGGCTATCACTGAATTTTACAAGCAATGAGCAAGAGAAGTATATCGAGTATGCAATTGCAGATCCCACGGTGCTATCACGTACCATACTGGATGTCTCCGGCCAGCTGAAGGCGCTTGTGTGGTTCGAGGGGTCGCGGGATTGGCAAACCATCTTCACGGCACCCAAATCGCAGTGCGATGTCTACGCTTTCTGTGGACCTTTCACGGTCTGCAACGACATCACATTCCCCTCCTGCACCTGCATGAAGGGCTTCTCAGTACAATCACCTGAAGATTGGGAGCTAGATGACCGAACAGGTGGATGTGTGAGAAATACTCCGCTGCTCTGCAACAGCAATAAAACTGCAGCAGGCACGGCAGATAAGTTCTATCCTATGACTTCTGTTCAGCTTCCTGATAAAGCCCAGAGCATAGGAGCAGCTACTAGTGCAGATGAATGTGCAGCTGCCTGCCTCAGTAGCTGCTCATGTACTGCGTATTCCTACGGTGAAGGTGGCTGCTCTGTTTGGCATGACAAGCTGCTCAATGTACGACAACAAGGTAATGGTGTTCTCTACCTTCGCCTTTCTGCAAAAGAAGTACTGGAAAGTAGGAGAAACAATAGATGGGGGGTGATCCTTGGTGCTTCAATTGGTGCCAGCACTGCTGCTTTGGGTTTGATCTTTCTGCTGATGATTTGGATCAGAAAAGGGAAGAGATATAACCTCACAATGGATAATGTTCAGGGAGGCATGGGAATCATTGCATTTAGATACGTTGATCTCCAGCATGCAACTAAAAATTTTTCGGAGAAGTTGGGGGCCGGCAGTTTTGGTTCTGTATTTAAGGGGTCGCTAAGTGACTCGACTATCATAGCAGTGAAAAGGCTTGATGGTGCTCGCCAAGGAGAGAAGCAATTCAGAGCTGAAGTGAGTTCCATAGGGATAATCCAGCATGTAAACTTGGTTAAACTGATTGGGTTTTGCTGCGAAGGTGACAGGAGGTTACTTGTTTATGAACACATGCCAAAGAGTTCTCTTGATGCCCATCTCTTCCCAAGCAGTGGTGCAGTTTTGAGTTGGACTATTAGGTACCAAATAGCCCTCGGAGTTGCAAGAGGACTAGCTTATTTGCATTCTAGTTGCCGAGACTGCATTATACACTGTGATATCAAACCAGAGAACATACTTCTTGATTCATCTTTCACTCCTAAAGTTGCAGACTTTGGAATGGCAAAGTTTCTCGGAAGGGATTTCAGTCATGTCGTAACTACAATGAGAGGAACCATAGGATATCTTGCTCCTGAGTGGATAAGCGGAACAGCTATCACATCAAAAGTGGACGTTTACAGCTATGGAATGGTTTTGTTAGAAATCATTTCAGGAAGCAGGAACTCCAGTAAACAATCTTCGCGTGATGGCGTGCATGAAGCTTGTTTCCCCGTGCAAGTTGCACGCAATCTTCTGAACAGAGACATTGACAGTCTGGTGGATGCAAACTTGCATGGTGAAGTGAAACTGGAGCAGGTTGAAAGAGTTTGCAAAGTCGCATGTTGGTGTATTCAAGACAATGAGTTTGATCGACCCACAATGAGTGAGGTACTACAGTTTCTCGAGGGTCTATCTGAAGTTGAGACACCTCCAATGCCAAGATTGCTTCATACTCTTGCAGGAGGTTTAGATTCGAAAATAATGTAA
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| Protein seq | PTLDAISPGQELAAGDKLVSSNGRFALGFFQTDSNKSSSNSTPNIYLGIWFNTVPKFTPVWVANGENPVADLASCKLLVSSDGNLAIVATTHAKNSSMVWSSKANIPTNTTHAVLLDDGNLVLRSTSTTNASSTILWQSFDHPTDTVLQGGKIGWNNATGVNRRLVSRKNTVDQAPGMYSFELLGHNGPTSMVSTFNSSNPYWSSGDWNGRYFSNIPETVGQTWLSLNFTSNEQEKYIEYAIADPTVLSRTILDVSGQLKALVWFEGSRDWQTIFTAPKSQCDVYAFCGPFTVCNDITFPSCTCMKGFSVQSPEDWELDDRTGGCVRNTPLLCNSNKTAAGTADKFYPMTSVQLPDKAQSIGAATSADECAAACLSSCSCTAYSYGEGGCSVWHDKLLNVRQQGNGVLYLRLSAKEVLESRRNNRWGVILGASIGASTAALGLIFLLMIWIRKGKRYNLTMDNVQGGMGIIAFRYVDLQHATKNFSEKLGAGSFGSVFKGSLSDSTIIAVKRLDGARQGEKQFRAEVSSIGIIQHVNLVKLIGFCCEGDRRLLVYEHMPKSSLDAHLFPSSGAVLSWTIRYQIALGVARGLAYLHSSCRDCIIHCDIKPENILLDSSFTPKVADFGMAKFLGRDFSHVVTTMRGTIGYLAPEWISGTAITSKVDVYSYGMVLLEIISGSRNSSKQSSRDGVHEACFPVQVARNLLNRDIDSLVDANLHGEVKLEQVERVCKVACWCIQDNEFDRPTMSEVLQFLEGLSEVETPPMPRLLHTLAGGLDSKIM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.097119 | 0.000000 | 0.466324 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0553000 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os04g34270 | RBH | 0.171803 | 0.029205 | 0.106384 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os04g0419900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_04g0013100 | RBH | 0.000000 | 0.0 | 0.854248 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_04g0013920 | SBH | 0.095691 | 0.0 | 0.118430 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_04g0013640 | RBH | 0.000000 | 0.227309 | 1.516340 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_04g0013320 | RBH | 0.019342 | 0.033247 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0013590 | RBH | 2.743722 | 0.0 | 4.302621 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_04G0328400 | RBH | 0.265533 | 0.849965 | 0.2211945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_04g0012500 | RBH | 0.143969 | 0.0 | 0.481970 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_04G0326000 | RBH | 0.1202815 | 0.0395345 | 0.0627 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0013100 | SBH | 0.121122 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_04g0012690 | SBH | 0.953531 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_04g0012700 | SBH | 3.485304 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0013300 | RBH | 0.138442 | 0.149568 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_04g0013490 | RBH | 0.172104 | 0.275736 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_04G012670 | RBH | 0.284199 | 0.643363 | 0.235737 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_04g0012660 | RBH | 0.428041 | 1.303368 | 1.550173 |
