Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0227600 | OGI:02021150 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:7164809-7166419 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | CACACTCGCAAAAATGGTTGTCTACAGCATCCTCATCCTCTTTCTACTACTATTGATCTTCTCCATCTCCAACTCCCAATCGGCGGCGCAGCCCAGCGCCGACGAGCAAACACTACTCCTAGCAATCAAGCAAGATTGGGACAACCCAGCTCCACTCAGTTCATGGAGCAGCACCGGCAACTGGACTGGTGTTATCTACAACAATATCACAGGTCAGGTCACTGGCCTCTCCTTGCCAAGTTTCCATATAGCCAGACCAAACCCACCCTCCGTTTGTAGACTCAAGAACCTAACCTACATAGACCTCTCTTTCAACAATCTCACCGGTGATTTCCCCACGGTGCTCTACGGTTGCTCAGCTTTGGAGTTCCTTGACCTATCCAACAATCAATTATCCGGCAAACTTCCGGACCGCATTGACAGGCTATCGTTGGGGATGCAACACCTCAACCTGTCCAGCAATGCTTTCACCGGCGATGTGCCGTTGGCTATTGGAAGGTTCTCGAAGCTCAAGTCATTGGTACTTGACACTAACAGCTTCAATGGGAACTACCCGGGTGCCGCCATTGGAGGCCTTTTGGAGCTTGAGACGCTGACGCTGGCGAAAAACCCGTTTGAGCCGGGTCCAGTCCCAAAAGAGTTTGGCAATCTCACAAAGCTGAAGTTGTTGTGGTTATCATGTATGAACATGACTGGGACCATCCCTGATGATCTATCGTCACTGACAGAGCTCACACTGCTGGACTTGTCACAAAATAAGATGCAGGGACAAATTCCCGAGTGGGTATTGAAGCACCAGAAACTCGAGAATCTATATCTCTATGCAAGCAATTTGAGTGGCGAGATTGGTCCTAACATCACAGCTCTCAACCTGCAGGAGCTTGATCTGTCCATGAACAAGTTCTCTGGATCAATACCAGAGGACATTGCAAACCTGAAGAAGTTGAGATTACTATTTTTGTACTACAACAATCTCACTGGACCCATCCCGGCTGGTGTTGGTATGATGCCGAACCTCACTGACATCCGTCTCTTCAATAACAAGCTCTCTGGGCCCCTACCCGCGGAGCTTGGAAAGCATTCGGAATTGGGGAATTTTGAGGTGTCCAACAACAACCTCTCTGGTGAGCTGCCGGATACACTTTGCTTCAATAAGAAGCTCTTTGACATTGTGGTGTTCAACAATAGCTTCTCCGGCGTGTTCCCGACGAACCTTGGGGATTGCAAAACCATCAACAACATCATGGCATACAACAACCACTTTGTTGGGGACTTTCCCAAGAAGATATGGTCATTCGAGTTGCTCACCAATGTCATGATTTACAACAACTTCACCGGCACTCTACCTAGTGAGATATCATTTAACATCTTAAGGATTGAGATGGGGAACAATCGCTTCTCCGGTGCCCTCCCGTCGGCCGCCGTCGGTCTGAAGAGTTTCACGGCGGAGAACAACCAGTTCTCCGGTGAACTGCCAACTGACATGTCTAGGCTCGCCAACCTCACCATGTTGAACCTCGCCGGCAACCAGTTGCTCACCACTGTCAAGATTTATATTAACAACTTCGCCAGCACTCTACCAAGTAATAAGATTGTTAGTAAGTCAAATGT
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| CDS seq | ATGGTTGTCTACAGCATCCTCATCCTCTTTCTACTACTATTGATCTTCTCCATCTCCAACTCCCAATCGGCGGCGCAGCCCAGCGCCGACGAGCAAACACTACTCCTAGCAATCAAGCAAGATTGGGACAACCCAGCTCCACTCAGTTCATGGAGCAGCACCGGCAACTGGACTGGTGTTATCTACAACAATATCACAGGTCAGGTCACTGGCCTCTCCTTGCCAAGTTTCCATATAGCCAGACCAAACCCACCCTCCGTTTGTAGACTCAAGAACCTAACCTACATAGACCTCTCTTTCAACAATCTCACCGGTGATTTCCCCACGGTGCTCTACGGTTGCTCAGCTTTGGAGTTCCTTGACCTATCCAACAATCAATTATCCGGCAAACTTCCGGACCGCATTGACAGGCTATCGTTGGGGATGCAACACCTCAACCTGTCCAGCAATGCTTTCACCGGCGATGTGCCGTTGGCTATTGGAAGGTTCTCGAAGCTCAAGTCATTGGTACTTGACACTAACAGCTTCAATGGGAACTACCCGGGTGCCGCCATTGGAGGCCTTTTGGAGCTTGAGACGCTGACGCTGGCGAAAAACCCGTTTGAGCCGGGTCCAGTCCCAAAAGAGTTTGGCAATCTCACAAAGCTGAAGTTGTTGTGGTTATCATGTATGAACATGACTGGGACCATCCCTGATGATCTATCGTCACTGACAGAGCTCACACTGCTGGACTTGTCACAAAATAAGATGCAGGGACAAATTCCCGAGAGCTTGATCTGTCCATGA
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| Protein seq | MVVYSILILFLLLLIFSISNSQSAAQPSADEQTLLLAIKQDWDNPAPLSSWSSTGNWTGVIYNNITGQVTGLSLPSFHIARPNPPSVCRLKNLTYIDLSFNNLTGDFPTVLYGCSALEFLDLSNNQLSGKLPDRIDRLSLGMQHLNLSSNAFTGDVPLAIGRFSKLKSLVLDTNSFNGNYPGAAIGGLLELETLTLAKNPFEPGPVPKEFGNLTKLKLLWLSCMNMTGTIPDDLSSLTELTLLDLSQNKMQGQIPESLICP |
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| Function | Receptor-like protein 52 [UniProtKB/Swiss-Prot:Q7FZR1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0227600 | OsNip_02t0227600-01 | Chr02 | 7164809 | 7166419 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTTGTCTACAGCATCCTCATCCTCTTTCTACTACTATTGATCTTCTCCATCTCCAACTCCCAATCGGCGGCGCAGCCCAGCGCCGACGAGCAAACACTACTCCTAGCAATCAAGCAAGATTGGGACAACCCAGCTCCACTCAGTTCATGGAGCAGCACCGGCAACTGGACTGGTGTTATCTACAACAATATCACAGGTCAGGTCACTGGCCTCTCCTTGCCAAGTTTCCATATAGCCAGACCAAACCCACCCTCCGTTTGTAGACTCAAGAACCTAACCTACATAGACCTCTCTTTCAACAATCTCACCGGTGATTTCCCCACGGTGCTCTACGGTTGCTCAGCTTTGGAGTTCCTTGACCTATCCAACAATCAATTATCCGGCAAACTTCCGGACCGCATTGACAGGCTATCGTTGGGGATGCAACACCTCAACCTGTCCAGCAATGCTTTCACCGGCGATGTGCCGTTGGCTATTGGAAGGTTCTCGAAGCTCAAGTCATTGGTACTTGACACTAACAGCTTCAATGGGAACTACCCGGGTGCCGCCATTGGAGGCCTTTTGGAGCTTGAGACGCTGACGCTGGCGAAAAACCCGTTTGAGCCGGGTCCAGTCCCAAAAGAGTTTGGCAATCTCACAAAGCTGAAGTTGTTGTGGTTATCATGTATGAACATGACTGGGACCATCCCTGATGATCTATCGTCACTGACAGAGCTCACACTGCTGGACTTGTCACAAAATAAGATGCAGGGACAAATTCCCGAGAGCTTGATCTGTCCATGA
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| Protein seq | MVVYSILILFLLLLIFSISNSQSAAQPSADEQTLLLAIKQDWDNPAPLSSWSSTGNWTGVIYNNITGQVTGLSLPSFHIARPNPPSVCRLKNLTYIDLSFNNLTGDFPTVLYGCSALEFLDLSNNQLSGKLPDRIDRLSLGMQHLNLSSNAFTGDVPLAIGRFSKLKSLVLDTNSFNGNYPGAAIGGLLELETLTLAKNPFEPGPVPKEFGNLTKLKLLWLSCMNMTGTIPDDLSSLTELTLLDLSQNKMQGQIPESLICP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.394133 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_06g0557100 | SBH | 2.966755 | 3.056689 | 3.144203 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g13420 | RBH | 0.000000 | 0.0 | 0.125496 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0227600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0009580 | RBH | 0.0 | 1.875847 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0004510 | SBH | 0.087645 | 0.000000 | 0.391188 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0009530 | RBH | 0.095448 | 1.284628 | 0.192024 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0009410 | SBH | 1.304985 | 0.151174 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0009560 | SBH | 30.706505 | 14.294057 | 48.083878 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0119700 | SBH | 0.4960535 | 1.3040785 | 0.0331235 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0004280 | SBH | 0.048594 | 0.017924 | 0.096358 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0124600 | SBH | 34.9371965 | 16.9308355 | 0.1263695 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0009810 | SBH | 2.356398 | 0.553456 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0009490 | SBH | 2.658061 | 9.032743 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0009780 | SBH | 19.474405 | 33.292999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0009800 | SBH | 3.465631 | 0.668533 | 2.012019 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0004290 | SBH | 0.032945 | 0.534010 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G004310 | SBH | 0.850914 | 0.737580 | 0.524094 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0004260 | SBH | 0.000000 | 0.353235 | 0.384476 |
