Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_02g0119000 | OGI:02003970 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr02:1003715-1005369 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GGATGCAAATGGACTAGGGATGAGAGCAATTCCAGGAGAGGATTACTGTCGAATTGTAATACAGTACCCAAGCGACACAGATTCTAAGTGGGTAAGTTGCACATGTGCCGTGTAATTTCCTTCTGGATGCAGGCCTTCCCCATTTCAATTGTAGCCAGCTCCTGACATAGTTTGCAAAGGCCTCTTTTAATTATTGCTTGCATCCTAGCTTATGGTTCTGAAAATCGCCATTAGCGTGTACAATATTCCTCGCATACTCGTGCCACCTTTTGTGATGCATGTGTTTGTTTTCTTAGTTCTTAGGCACTGATATTTGCAGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTCAATCTCTGTGAAGCTGTAGCCTCATGGGAGCAGGTTAGCATTCATTCAACTGACATATGTATGTGATTTTTACAGATGTATTGAAGTTCAACATTATATGATATAACGCAAAACATGGCGATCCTCAGTATATCACAAACTATGATGCCTTATTGTCCAGATGTTTGTAGATCACAGTATTAGTTATTGTTATGGACTTATGGATCACAGTATTCTATTTAGTTATTGTTATGGACTCATGGTCACTCAGTTGTTGTTTTCCTAGGTCTGCAATAGCACAACAATACTCACAAAGCTGTTATTACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATGCAAGGAATGGTTGGTGCTATTGATCTTACGTACTAAATATGATGTATGTTGATCTGCAGATCTTCTTACAGTTGATGTGATGATCTTTCAGGATGAGGTACTTTTCGGAGTCCAGAAAGGGACACACTTCACTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTGTGAGTTTCTCATTTCCCCTAATCCGAACTAATAGAACCATTCCTACATGGAGGGATTATTACTTAGCCACACTGTTATCGTGTGAAGAGATTGACTTGTTGATTTCTTAAAGAAAAGGGTAAATTGGAGCCATGCCATTATAATTTTGCAAAGTTTGAGATATGCCATTGGTATATCAATGACATGTAGAACCCACATGAGTCAATGACATGTGGGTCAGGATGGTATATCTCAAATTTTGCAAAATGTGCAGCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGCTTCCAACCAAGGACACCATTGAAGCTGCTAGGGCTGCTTCTGAGAAACTGTTGAAGTAAGTTTTGTGGCCTTCCTTTGTTTAGCATGATTCTTGCTCCCAGTTGTCAAGCACTCCATGTCCATGGCAACTCTACTTAGGGGCTTATTTACTGGATGTTGATTTCCATCTGTTTGGTTTTGGTGCTTGAATTAACTAAATTAATCAGATACAATATCATCACGCCACAAGTTGTATAACTTGAAACCTCCTCGTTGCAAAATGCACTATAGGAGACCTGGAGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCTCGAGAAAGTGAAGACAGCAAAAAGATCCGTTGTCCACGATGCTGCCTTGAACCACCTGGAGTACATAAGAGGTTCCACCAGGTACCCTCTGGAGCGAAATGCTGGGGGCGGTTACTTCTGCATGATCAACGACAGATAG
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| CDS seq | ATGGACTTATGGATCACAGTATTCTATTTAGTTATTGTTATGGACTCATGGTCACTCAGTTGTTGTTTTCCTAGGTCTGCAATAGCACAACAATACTCACAAAGCTGTTATTACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATGCAAGGAATGGATGAGGTACTTTTCGGAGTCCAGAAAGGGACACACTTCACTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGCTTCCAACCAAGGACACCATTGAAGCTGCTAGGGCTGCTTCTGAGAAACTGTTGAAGAGACCTGGAGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCTCGAGAAAGTGAAGACAGCAAAAAGATCCGTTGTCCACGATGCTGCCTTGAACCACCTGGAGTACATAAGAGGTTCCACCAGGTACCCTCTGGAGCGAAATGCTGGGGGCGGTTACTTCTGCATGATCAACGACAGATAG
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| Protein seq | MDLWITVFYLVIVMDSWSLSCCFPRSAIAQQYSQSCYYSVDMYGFTVDPGCKEWMRYFSESRKGHTSLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWLPTKDTIEAARAASEKLLKRPGAGSEGPLSSCTMIKKLEKVKTAKRSVVHDAALNHLEYIRGSTRYPLERNAGGGYFCMINDR |
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| Function | Sialyltransferase-like protein 4 [UniProtKB/Swiss-Prot:Q6ZH45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_02g0119000 | OsNip_02t0119000-00 | Chr02 | 1003715 | 1005369 | + | RAP2018-11-26 | ||
| CDS seq | ATGGACTTATGGATCACAGTATTCTATTTAGTTATTGTTATGGACTCATGGTCACTCAGTTGTTGTTTTCCTAGGTCTGCAATAGCACAACAATACTCACAAAGCTGTTATTACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATGCAAGGAATGGATGAGGTACTTTTCGGAGTCCAGAAAGGGACACACTTCACTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGCTTCCAACCAAGGACACCATTGAAGCTGCTAGGGCTGCTTCTGAGAAACTGTTGAAGAGACCTGGAGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCTCGAGAAAGTGAAGACAGCAAAAAGATCCGTTGTCCACGATGCTGCCTTGAACCACCTGGAGTACATAAGAGGTTCCACCAGGTACCCTCTGGAGCGAAATGCTGGGGGCGGTTACTTCTGCATGATCAACGACAGATAG
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| Protein seq | MDLWITVFYLVIVMDSWSLSCCFPRSAIAQQYSQSCYYSVDMYGFTVDPGCKEWMRYFSESRKGHTSLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWLPTKDTIEAARAASEKLLKRPGAGSEGPLSSCTMIKKLEKVKTAKRSVVHDAALNHLEYIRGSTRYPLERNAGGGYFCMINDR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02620 | SBH | 0.173884 | 0.0 | 0.508225 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0119000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001390 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001450 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001400 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001410 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0015700 | SBH | 3.204828 | 5.7061765 | 10.2112925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001370 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016700 | RBH | 0.8110225 | 2.084876 | 5.635476 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001340 | SBH | 0.0 | 0.066984 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001280 | SBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001350 | SBH | 0.0 | 5.221255 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001450 | RBH | 0.0 | 0.000000 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001440 | RBH | 0.000000 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001410 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001380 | RBH | 0.623385 | 20.424784 | 0.0 |
