Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| LOC_Os02g02620 | OGI:02003950 | 16/16 | Nipponbare | IRGSP 1.0 | MSU | Chr02:961509-965543 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TTCGCAAATGGCGAACTGATCCCCGCCGCTCGCTTCCTCTCTCTCACACTCGACTCCGGCGAGAGCACGGGGGCCAAAGCCGGCAGAGCGCGGCTAGGGCTTCGGCTGCTCCGGCCATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATGTAATGCGCGCGCCTTTTTTCTTCTGCTTTTGGCTTTGCGTGTGTCGATTCTGAGGTGGGATGGATGCGTTTGTGCGTGCGTGCAGATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGTACGGTTTCCTGATCTGTCTCCGCTGTTAATTGATCCTGTTCACTGTACGGGCAATTGGGATTCAGTTGCCTTGTAATTGTGTGCAATTAGATGCTACATTGTGAGATTTGGGGCCATTAGATTTCCACACTCATGGAGAATCGGCGTGGTGATTAGTTATTGCTTCGTAAATTCTTGATTTATCGTGGTAATTGTTTACTCAAAGGCATAGTAATTCAGTAGACTGTCCTGGTATGTACTTTGTTGTATCGATAGTATCCTAATATACATTCACGAAGGAAATTTGTAGTGTATTCTTGTTTGTGGTGACTTGATGTTCGGTATATAAAGATCATTAATGTGTACTCGTGCTAAAAACAATCAGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGGTAAGTGCACATGTGCTGTGTAATTTCCTTCTGGATGCAGGCCTTCCCATTTCAAATGTAGTCAGCTCCTGACATAGTTTGCAAAGCCTCTTTTAATTCTTGCTCTGTACTTACATCGCATCCTACCTTATGCTTCTGAAAATTGCCACTAGCGTGAACAGTACTCATTGCATACTCGTGCCACCTTTTGTGATGCGTAGGGATGGCAATGGGTCGGGTCGGGCATGGGTAGAGCAAAACCATGCCTGACCCGATGCCCGACATTGCCAGCCCAAACCCTACCCACTAGAGGTAGCGGGCAAAACTCCGTGCCCGGCGGGCGCGGGTATATCTGGCGGGTACCCAATGAATCTCACATGAATAATAACTTGAAAGATATGTAATTTAACAAAGAGAAATAAAATCAATAATTTACCAAATTATCGGTTATCAACAATAATTTGAATTACATCATAACTTAGTATCAATTAGCATCACAAATGAACCGAGAGAAATGGTATAAGAATTAAGAAATGAGTCAAAATTAGCTAATACATATGTATCGGATTGGGCATGGTTTACCCACGGGTAAAAAATGAAACCCACCTATTACCCATAACGTCTTCGGGTCTCGGGCGGGCGTGCCCATGGGTAAAAAGTCACACCCACGCCCGTACCCATCGGGTCGGGTATCCACGGATACCTGGACCCATGGGTAAAATTCCCATCCCTAGTGATGCGTGTGTTTGTTTTTCTTAGTTCTTATGCACTGATATTTGCAGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTCAATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTAGCATTCATTCAACTGACATATGTATGTGTTTTTTTGCAGATGCATTGAAGTTTAATATTATATGATATAATGTAAAACATGGCAATCCTCAGTATGTAAACACTGTGTCCAGATATTTGTTAGATCACAGTATTAGCTATTTTTATGGACTTATGGTCACTCAGTTGCTTTTTTCCTAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGTGGGTACACATACTTGCAGTTTCATCAAGATTTGCAGCATGATTAACTCCACAAACAGATTATTGAGCATGTTTAGTCTTGAAATTGCAGGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGGTTTCTTTAAGATACTTATGTTTGCTGCTCTTGTGTCGTTCCACTCGAACATAAACTGACTTCTATTTTTATTGAAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGACTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGGTAGGTCTGTCAGCCACCTATTTTCCCATTTGGTGAGATACTAAGGCATGCTAATTTTTATGGTTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGTAATTTAGCTGTCCTATTTAAGAAAAATACGGTAGCTTGGGTACATATTCTGTGTTCTCTTACCTGCCTGCTGGAATTCTTGCTATGTAGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTTGACCCAGGATACAAGGAATGGTTGGTGCGATCGATCTTACGCACTAAATATGATGTATGTTGATGTGCAGATCTGCTTACAGTTGATGTGATGATCTTTCAGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTGTGAGTTTCTCATTTCCCCTAATCCGAACTAATCAAACCATTCCTACATGGAAGGATTATTACTTAGCCACACTGTTATAGTGTGAAGAGATAACTTACTGTTTTTAAATATAAACATGTGCAGCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGTAAGTTTTGTGGCCTACCTTTATTTAGTATGGTTCTTGCTTCCATTCGTCAATCACTCCATGGCAACCCCACTTAGATACTTAGTTACTAGATATTGATTTTCATCTGCTTGGTTCTGGTGCTTAAATTAACTAAATTAATCAGATATGTCATTATGCCACATGTTGTATAACTTGAAACTTCGTCGTTGCAAAATGCACTATAGGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAGACATATAGCTGCCCATATTCTAGGAGTGGCTGAATTCATGGTACCATGAAGCAGAACACTGTACCCCGATGAATGAATCCTACACGGATAAACTATTTTGAGGGAACATTGGTGCTCATTTTTGTACAGAGCCGGCAGTTGAGATGATTTTACGCATGAGTAGTCACAATGTGTTGTAACTTACATTGAAACTACACAAGTGTTGTGTGATGGAATGAACAGATAGCGGGGCAGTTTGCTGCGCAATGCATCGGGTCGCCAAATTTGTCACCTGTAACTAGAAGAAATCTTAACTATGTACATGGAGCCTGTAATTCGTTTGGCAGTAGACATGCACTATTTGATTGGCATGATGGCATCACATTCTGGAACTTACTATGTCTTAACTTGCATAGATATGTTGACCAACAACTTGAGGCAAATCATTAGTATACAAATGATCTCTCTGATACTATTTCCAATC
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| CDS seq | ATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTCAATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGACTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTTGACCCAGGATACAAGGAATGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAG
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| Protein seq | MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIKKREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER |
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| Function | Sialyltransferase-like protein 4 [UniProtKB/Swiss-Prot:Q6ZH45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| LOC_Os02g02620 | LOC_Os02g02620.1 | Chr02 | 961509 | 965543 | + | MSU_osa1r7 | ||
| CDS seq | ATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTCAATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGACTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTTGACCCAGGATACAAGGAATGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAG
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| Protein seq | MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWKDPKTGEPEGLSFEFNLCEAVASWEQVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIKKREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.173884 | 0.0 | 0.508225 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0118400 | RBH | 0.262661 | 0.0 | 2.016788 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001340 | RBH | 0.104959 | 12.863765 | 5.134817 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001390 | RBH | 0.0 | 3.165985 | 1.308318 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001330 | RBH | 0.344393 | 1.231748 | 5.969302 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001330 | RBH | 0.107789 | 0.393986 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001340 | RBH | 0.578363 | 16.021727 | 12.441602 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0015700 | RBH | 3.204828 | 5.7061765 | 10.2112925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001310 | RBH | 0.080140 | 0.619148 | 0.630493 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016100 | RBH | 3.196539 | 2.7227705 | 21.5669495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001340 | RBH | 0.0 | 0.066984 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001280 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001350 | RBH | 0.0 | 5.221255 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001390 | RBH | 0.0 | 0.678204 | 0.359570 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001380 | RBH | 0.000000 | 3.815785 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001350 | RBH | 0.000000 | 3.871090 | 2.249253 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001320 | RBH | 0.000000 | 4.838429 | 2.379477 |
