Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsIR64_02g0001310 | OGI:02003950 | 16/16 | IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | Chr02:899702-903741 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AACTCTTCGCAAATGGCGAACTGATCCCCGCCGCTCGCTTCCTCTCTCTCACACTCGACTCCGGCGAGAGCACGGGGGCCAAAGCCGGCAGAGCGCGGCTAGGGCTTCGGCTGCTCCGGCCATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATGTAATGCGCGCGCCTTTTTTCTTCAGCTTTTGGCTTTGCGTGTGTCGATTCTGAGGTGGGATGGATGCGTTTGTGCGTGCGTGCAGATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGTACGGTTTCCTGATCTGTCTCCGCTGTTAATTGATCCTGTTCACTGTACGGGCAATTGGGATTCAGTTGCCTTGTAATTGTGTGCAATTAGATGCTACATTGTGAGATTTGGGGCCATTAGATTTCCACACTCATGGAGAATCGGCGTGGTGATTAGTTATTGCTTCGTAAATTCTTGATTTATCGTGGTAATTGTTTACTCAAAGGCATAGTAATTCAGTAGACTGTCCTGGTATGTACTTTGTTGTATCGATAGTATCCTAATATACATTCACGAAGGAAATTTGTAGTGTATTCTTGTTTGTGGTGACTTGATGTTCGGTATATAAAGATCATTAATGTGTACTCGTGCTAAAAACAATCAGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGGTAAGTGCACATGTGCTGTGTAATTTCCTTCTGGATGCAGGCCTTCCCATTTCAAATGTAGTCAGCTCCTGACATAGTTTGCAAAGCCTCTTTTAATTCTTGCTCTGTACTTACATCGCATTCTACCTTATGCTTCTGAAAATTGCCACTAGCGTGAACAGTACTCATTGCATACTCGTGCCACCTTTTGTGATGCGTAGGGATGGCAATGGGTCGGGTCGGGCACGGGTAGAGCAAAACCATGCCTGACCCGATGCCCGACATTGCCAGCCCAAACCCTACCCACTAGAGATAGCGGGCAAAACTCCGTGCCCGGCGGGCGCGGGTATATCCGGCGGGTACCCAATGGATCTCACATGAATAATAACTTGAAAGATATGTAATTTAACAAAGAGAAATAAAATCAATAATTTACCAAATTATCGGTTATCAACAATAATTTGAATTACATCATAACTTAGTATCAATTAGCATCACAAATGAACTGAGAGAAATGGTATAAGAATTAAGAAATGAGTCAAAATTAGCTAATACATATGTATCGGATTGGGCATGGTTTACCCACGGGTAAAAAATGAAACCCACCTATTACCCATAACGTCTTCGGGTCTCGGGCGGGCGTGCCCATGGGTAAAAAGTCACACCCACGCCCGTACCCATCGGGTCGGGTATCCACGGATACCTGGACCCATGGGTAAAATTCCCATCCCTAGTGATGCGTGTGTTTGTTTTTCTTAGTTCTTATGCACTGATATTTGCAGAAAGATCCAAAAACTGGAGAACCTGAAGGTTTATCATTTGAGTTCAATCTCTGTGAAGCTGTGGCTTCATGGGAGCAGGTTAGCATTCATTCAACTGACATATGTATGTGTTTTTTTGCAGATGCATTGAAGTTTAATATTATATGATATAATGTAAAACATGGCAATCCTCAGTATGTAAACACTGTGTCCAGATATTTGTTAGATCACAGTATTAGCTATTTTTATGGACTTATGGTCACTCAGTTGCTTTTTTCCTAGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGTGGGTACACATACTTGCAGTTTCATCAAGATTTGCAGCATGATTAACTCCACAAACAGATTATTGAGCATGTTTAGTCTTGAAATTGCAGGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGGTTTCTTTAAGATACTTATGTTTGCTGCTCTTGTGTCGTTCCACTCGAACATAAACTGACTTCTATTTTTATTGAAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGCCTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGGTAGGTCTGTCAGCCACCTATTTTCCCATTTGGTGAGATACTAAGGCATGCTAATTTTTATGGTTGCAGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGTAATTTAGCTGTCCTATTTAAGAAAAATACGGTAGCTTGGGTACATATTCTGTGTTCTCTTACCTGCCTGCTGGAATTCTTGCTATGTAGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATACAAGGAATGGTTGGTGCGATCGATCTTACGCACTAAATATGATGTATGTTGATGTGCAGATCTGCTTACAGTTGATGTGATGATCTTTCAGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTGTGAGTTTCTCATTTCCCCTAATCCGAACTAATCAAACCATTCCTACATGGAAGGATTATTACTTAGCCACACTGTTATAGTGTGAAGAGATAACTTACTGTTTTTAAATATAAACATGTGCAGCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGTAAGTTTTGTGGCCTACCTTTATTTAGTATGGTTCTTGCTTCCATTCGTCAATCACTCCATGGCAACCCCACTTAGATACTTAGTTACTAGATATTGATTTTCATCTGCTTGGTTCTGGTGCTTAAATTAACTAAATTAATCAGATATGTCATTATGCCACATGTTGTATAACTTGAAACTTCGTCGTTGCAAAATGCACTATAGGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAGACATATAGCTGCCCATATTCTAGGAGTGGCTGAATTCATGGTACCATGAAGCAGAACACTGTACCCCGATGAATGAATCCTACACGGATAAACTATTTTGAGGGAACATTGGTGCTCATTTTTGTACAGAGCCGGCAGTTGAGATGATTTTACGCATGAGTAGTCACAATGTGTTGTAACTTACATTGAAACTACACAAGTGTTGTGTGATGGAATGAACAGATAGCGGGGCAGTTTGCTGCGCAATGCATCGGGTCGCCAAATTTGTCACCTGTAACTAGAAGAAATCTTAACTATGTACATGGAGCCTGTAATTCGTTTGGCAGTAGACATGCACTATTTGATTGGCATGATGGCATCACATTCTGGAACTTACTATGTCTTAACTTGCATAGATATGTTGACCAACAACTTGAGGCAAATCATTAGTATACAAATGATCTCTCTGATACTATTTCCAATC
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| CDS seq | ATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGCCTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATACAAGGAATGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAG
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| Protein seq | MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIKKREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER |
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| Function | Sialyltransferase-like protein 4 [UniProtKB/Swiss-Prot:Q6ZH45] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0001310 | OsIR64_02g0001310.02 | Chr02 | 899717 | 903741 | + | NAM | ||
| CDS seq | ATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGCCTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATACAAGGAATGGACCAGGTACTTTTCGGAGTCCAGAAAGGGACACACTCCATTACATGGGAGAGCATATTATCAAATGATGGAATGTCTTGGTCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAG
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| Protein seq | MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWTRYFSESRKGHTPLHGRAYYQMMECLGLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIKKREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0001310 | OsIR64_02g0001310.01 | Chr02 | 899717 | 903741 | + | NAM | ||
| CDS seq | ATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATGGTCTAGGGCTGAAAGCAATTCCAGGAGAGGATTACTGTCGAGTTGTAATACAGTATCCAAGCGACACAGATTCTAAGTGGGTTCGCAATAGCACAACAATACTTACAAAGGAGTACATCGATGCGTTGCCAAATGGTTGGGAGGAGTATGCATGGCGCAGGATCAATAAAGGAATCCATCTGAACAAGTGCCAGAACAGGACTCTTTGCATGGAAAAACTTTCATTAGTTCTTCCTGAGACACCACCATATGTACCTCGGCAATTTGGTAGATGTGCTGTAGTTGGAAACTCTGGGGATCTTCTTAAAACCAAATTTGGGGATGAAATTGATTCTTATGATGTCGTTATTAGAGAGAACGGTGCACCCATCCAGAATTATACAGAATATGTTGGGACAAAGAGTACATTTCGCCTTCTTAACAGAGGATCTGCAAAGGCTCTAGATAAAGTTGTTGAGTTAGATGAAACAAAAAAGGAAGCCCTTATCGTTAAGACAACAATACATGATATCATGAACCAAATGATCCGGGAAATTCCAATAACCAATCCAGTATACCTCATGCTAGGCACATCGTTTGGTTCCTCTGCTAAAGGAACTGGGCTTAAGGCTCTTGAATTCGCTCTGTCTATGTGTGACAGTGTCGACATGTATGGATTTACAGTAGACCCAGGATACAAGGAATGGTTGCTTGTAAAAATCCACTCACCTATGCGAGGTGATCCTGGCAGAGTAGTAAAGTGGGCTCCAACCAAGGACACCATTGAAGCTGCTAGGGTTGCTTCTGAGAAACTGTTGAAGAGACCTGGGGCTGGAAGCGAGGGCCCTTTGAGCTCTTGCACCATGATAAAGAAGCGCGAGAAAGGGAAGACACCAAAAAGATCTGTTGTCCGCCATGCTGCCTTGAAGCATCTGGAGTACATGAGAGGTGCCACCAGGTACCCTCTGGAGCGGAATGCTGGGGGTGGTTACCTCTGCATGATCAACGAAAGATAG
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| Protein seq | MRVLPLALAAAIFSGVTAILVYLSGLSSYGGARVSDADLAALGALQSGFSKCVDANGLGLKAIPGEDYCRVVIQYPSDTDSKWVRNSTTILTKEYIDALPNGWEEYAWRRINKGIHLNKCQNRTLCMEKLSLVLPETPPYVPRQFGRCAVVGNSGDLLKTKFGDEIDSYDVVIRENGAPIQNYTEYVGTKSTFRLLNRGSAKALDKVVELDETKKEALIVKTTIHDIMNQMIREIPITNPVYLMLGTSFGSSAKGTGLKALEFALSMCDSVDMYGFTVDPGYKEWLLVKIHSPMRGDPGRVVKWAPTKDTIEAARVASEKLLKRPGAGSEGPLSSCTMIKKREKGKTPKRSVVRHAALKHLEYMRGATRYPLERNAGGGYLCMINER
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsIR64_02g0001310 | OsIR64_02g0001310.03 | Chr02 | 899702 | 903647 | + | IsoSeq | ||
| CDS seq | CTCTTCGCAAATGGCGAACTGATCCCCGCCGCTCGCTTCCTCTCTCTCACACTCGACTCCGGCGAGAGCACGGGGGCCAAAGCCGGCAGAGCGCGGCTAGGGCTTCGGCTGCTCCGGCCATGCGGGTGCTCCCCCTCGCGCTCGCCGCCGCCATCTTCTCCGGCGTCACCGCCATCCTCGTCTACCTCTCCGGCCTCTCCTCATATGGCGGCGCTAGGGTTTCCGATGCGGACTTGGCGGCGCTGGGCGCGCTGCAGAGCGGCTTCAGCAAGTGTGTGGATGCAAATG
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| Protein seq | LFANGELIPAARFLSLTLDSGESTGAKAGRARLGLRLLRPCGCSPSRSPPPSSPASPPSSSTSPASPHMAALGFPMRTWRRWARCRAASASVWMQM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr02 | 900523 | 901546 | + | OsIR64_02g0001310.03 | OsIR64_02g0001310.02,OsIR64_02g0001310.01,OsIR64_02g0001310.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.080140 | 0.619148 | 0.630493 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0118400 | RBH | 0.262661 | 0.0 | 2.016788 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g02620 | RBH | 0.173884 | 0.0 | 0.508225 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0118400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0001340 | RBH | 0.104959 | 12.863765 | 5.134817 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0001390 | RBH | 0.0 | 3.165985 | 1.308318 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0001330 | RBH | 0.344393 | 1.231748 | 5.969302 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0001330 | RBH | 0.107789 | 0.393986 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0001340 | RBH | 0.578363 | 16.021727 | 12.441602 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0015700 | RBH | 3.204828 | 5.7061765 | 10.2112925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0001370 | RBH | 0.000000 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0016100 | RBH | 3.196539 | 2.7227705 | 21.5669495 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0001340 | RBH | 0.0 | 0.066984 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0001280 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0001350 | RBH | 0.0 | 5.221255 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0001390 | RBH | 0.0 | 0.678204 | 0.359570 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0001380 | RBH | 0.000000 | 3.815785 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G001350 | RBH | 0.000000 | 3.871090 | 2.249253 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0001320 | RBH | 0.000000 | 4.838429 | 2.379477 |
