Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0137282 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1998872-1999654 | ||||||||
| Gene Symbol | RLCK21, OsRLCK21 | ||||||||||
| DNA seq | ATGCATCAAACCTCATCGCAGCTAGTCTTGGCCTCGTTTCTGCTCCTTCTCTGCCACCACGCGCACGCCGACTGCGAGCCGGCGACATGCGGCAACCTCACCATCAATCCCCCGTTCTGGCTGGACGAGCCAGGCCGGCCGCCGTGCGGGCCGCCGACGTTCCAGCTCCAGTGCAGGGGCAGCGAAGCGTTCGTGGCGCACAGCTTCTTCCAGACCTACCAGGTGGTCCGCATCTTCACCGGCAACTCCTCCGTCGTCGTCGTCGACAGGAGCCTCCCGCTGGAGAGCGGCTGCCCGGTGCCGTGGTTCAACATCTCCATCGGCTTCGTCATGGGGCCATTCCTCATCAGCAGGGCCAACAAGGAGCTCGTCTTCGTCCACAACTGCACCACCACGAAGCGGCGGCCGCCGCAGGGGTTCCGCCGTATGCCCTGCAGCCCCGACGAGTCGTTCGTCTTCCTCGGCGACGGCCGCCCTCGTCTCTTGCTGCCGGGATGCTCCATGTCCGTCGTGCCGGTCCTTGGGTTGCAGGACGGGGACTACGTCGCGAGCATGAGGCGAGGGCTTCTGCTCGAGTGGATGCTGGTGCCGGGTGATTGCCAGAAGTGCTCGGCGAGTGGCGGGCAATGCGAGTACAGCAGCGACGGCATGGGGTTCTCGTGCAAATGTCCCAGCGGCGTCCACAACCCCACCAGCTGCGTTGCAGGCGGTGAGTTCTTCGCATCTCGCATGCCTCTGGCCCTCGGCCACGAAAACACTTTAATGGTACATACGTATGTATAA
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| CDS seq | ATGCATCAAACCTCATCGCAGCTAGTCTTGGCCTCGTTTCTGCTCCTTCTCTGCCACCACGCGCACGCCGACTGCGAGCCGGCGACATGCGGCAACCTCACCATCAATCCCCCGTTCTGGCTGGACGAGCCAGGCCGGCCGCCGTGCGGGCCGCCGACGTTCCAGCTCCAGTGCAGGGGCAGCGAAGCGTTCGTGGCGCACAGCTTCTTCCAGACCTACCAGGTGGTCCGCATCTTCACCGGCAACTCCTCCGTCGTCGTCGTCGACAGGAGCCTCCCGCTGGAGAGCGGCTGCCCGGTGCCGTGGTTCAACATCTCCATCGGCTTCGTCATGGGGCCATTCCTCATCAGCAGGGCCAACAAGGAGCTCGTCTTCGTCCACAACTGCACCACCACGAAGCGGCGGCCGCCGCAGGGGTTCCGCCGTATGCCCTGCAGCCCCGACGAGTCGTTCGTCTTCCTCGGCGACGGCCGCCCTCGTCTCTTGCTGCCGGGATGCTCCATGTCCGTCGTGCCGGTCCTTGGGTTGCAGGACGGGGACTACGTCGCGAGCATGAGGCGAGGGCTTCTGCTCGAGTGGATGCTGGTGCCGGGTGATTGCCAGAAGTGCTCGGCGAGTGGCGGGCAATGCGAGTACAGCAGCGACGGCATGGGGTTCTCGTGCAAATGTCCCAGCGGCGTCCACAACCCCACCAGCTGCGTTGCAGGCGGTGAGTTCTTCGCATCTCGCATGCCTCTGGCCCTCGGCCACGAAAACACTTTAATGGTACATACGTATGTATAA
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| Protein seq | MHQTSSQLVLASFLLLLCHHAHADCEPATCGNLTINPPFWLDEPGRPPCGPPTFQLQCRGSEAFVAHSFFQTYQVVRIFTGNSSVVVVDRSLPLESGCPVPWFNISIGFVMGPFLISRANKELVFVHNCTTTKRRPPQGFRRMPCSPDESFVFLGDGRPRLLLPGCSMSVVPVLGLQDGDYVASMRRGLLLEWMLVPGDCQKCSASGGQCEYSSDGMGFSCKCPSGVHNPTSCVAGGEFFASRMPLALGHENTLMVHTYV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0137282 | OsNip_01t0137282-00 | Chr01 | 1998872 | 1999654 | + | RAP2018-11-26 | ||
| CDS seq | ATGCATCAAACCTCATCGCAGCTAGTCTTGGCCTCGTTTCTGCTCCTTCTCTGCCACCACGCGCACGCCGACTGCGAGCCGGCGACATGCGGCAACCTCACCATCAATCCCCCGTTCTGGCTGGACGAGCCAGGCCGGCCGCCGTGCGGGCCGCCGACGTTCCAGCTCCAGTGCAGGGGCAGCGAAGCGTTCGTGGCGCACAGCTTCTTCCAGACCTACCAGGTGGTCCGCATCTTCACCGGCAACTCCTCCGTCGTCGTCGTCGACAGGAGCCTCCCGCTGGAGAGCGGCTGCCCGGTGCCGTGGTTCAACATCTCCATCGGCTTCGTCATGGGGCCATTCCTCATCAGCAGGGCCAACAAGGAGCTCGTCTTCGTCCACAACTGCACCACCACGAAGCGGCGGCCGCCGCAGGGGTTCCGCCGTATGCCCTGCAGCCCCGACGAGTCGTTCGTCTTCCTCGGCGACGGCCGCCCTCGTCTCTTGCTGCCGGGATGCTCCATGTCCGTCGTGCCGGTCCTTGGGTTGCAGGACGGGGACTACGTCGCGAGCATGAGGCGAGGGCTTCTGCTCGAGTGGATGCTGGTGCCGGGTGATTGCCAGAAGTGCTCGGCGAGTGGCGGGCAATGCGAGTACAGCAGCGACGGCATGGGGTTCTCGTGCAAATGTCCCAGCGGCGTCCACAACCCCACCAGCTGCGTTGCAGGCGGTGAGTTCTTCGCATCTCGCATGCCTCTGGCCCTCGGCCACGAAAACACTTTAATGGTACATACGTATGTATAA
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| Protein seq | MHQTSSQLVLASFLLLLCHHAHADCEPATCGNLTINPPFWLDEPGRPPCGPPTFQLQCRGSEAFVAHSFFQTYQVVRIFTGNSSVVVVDRSLPLESGCPVPWFNISIGFVMGPFLISRANKELVFVHNCTTTKRRPPQGFRRMPCSPDESFVFLGDGRPRLLLPGCSMSVVPVLGLQDGDYVASMRRGLLLEWMLVPGDCQKCSASGGQCEYSSDGMGFSCKCPSGVHNPTSCVAGGEFFASRMPLALGHENTLMVHTYV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.762090 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0138400 | SBH | 0.425040 | 0.000000 | 0.260576 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04490 | RBH | 0.117723 | 0.193910 | 0.204156 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0137282 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002590 | SBH | 0.146139 | 0.000000 | 0.280715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002510 | SBH | 0.000000 | 0.341345 | 0.355932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002660 | RBH | 0.086951 | 1.405004 | 0.239140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002480 | SBH | 0.008902 | 0.005864 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002580 | SBH | 1.277327 | 0.950951 | 0.636145 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0033300 | SBH | 0.3599865 | 0.7996085 | 1.4546695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002540 | SBH | 0.040325 | 0.0 | 0.025854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0033600 | RBH | 1.277155 | 1.7857565 | 4.5899985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002400 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002560 | SBH | 0.075790 | 0.585201 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002640 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002590 | SBH | 0.000000 | 0.000000 | 0.017706 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002510 | SBH | 0.025709 | 0.339940 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002700 | SBH | 0.364793 | 0.274939 | 0.455609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002580 | RBH | 0.259614 | 0.0 | 0.677685 |
