Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0020970 | OGI:12069410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:25189993-25192775 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcattaggctgtatcgtgtgcgctatccatctcaggttgcgccgccgcacggtacaggagaataaaccctaggttttgggcgacctcatcctgaagcgccgtagccatcccacgagcaagcaggcagcaagggctacccacccgctcgaccggaagcgtcgccgcggcaggtgcacgggctaccgccggtggacatcgccgctgccgcaggagtcgtcgtcgccgccacagtaggggcacgtcgccaacgccgCcccccgcgcccgttgccgccgccgttggagtcgtcgccgccaccacaggagtcaaccgctgtcgcaagtgcacgtcgcccctgccgccgtgggggcacgttgccaacgctgcccccgcgcccgtcgccaacgccgctggagccgtcgccgccgctgcaggtgctcgtcgcccctgccgccgactcctgtgatttcatcgctgttgtagaggtagactgttgtgatttaattgtgccgaTttttgtttgactggatttgagtactgagaatgaattgtgaaatttTCcttataggcaatctttttatgggtgaagatatggcagacaatttcaggacccttgaggaggaagaggagtaccgtacgattactgctatgagattcaagactgaggatgacggcttcaagttctacaataggtatgtgaaagaaaagggattcagtgtaaggaagaattttgctaggcgtgatcctgtgacagctgatgttgtgtttaggcagtatacttgctctagagaaggctataggaaagatatatatatggacacgactaacataagtagagaacctagagcactgacacgatgcggctgcaatgctcgttttgagattagactggacaaaaagaagggtgattggactgtagttaagtatgtggctaagcataatcataatttagctaaaccagatgaagttgcctttttacggtctcacagaaacattagtgatgctcaaaaggcaattgtgatggagttgagagatgttggtttgcgtcagaatcaagtaatggatgtcatggagaggcgtcatggtgggtttgaatcaactagtttcatgagtagggacctttataattattttaatagaatgaagaagaaacaaatcttaggtggagatgcagatcatgttataaagtatatgcaagcaaggcagaaagatgacatggagtatttctttgagtatgagacagatgaggccggtcgtttgaaaaggttgttttggtcagaccctcaatctcggattgattatgacgcgtttggggatgttaaccttcctttcatcccttttgtcggtgttaaccaccatggttcgacagtcatatttgcatgtgctatcgttgcagacgagaaagttgcaacctatgaatggatcctgaagcagtttttggattgcatgtgtcaaaaacacccgaaaggactgatcacagatggagataatgcgatgcgcagagcaattgcatctgtgatgccacattcagagcatcggttgtgcacatggcatatagaacagaatattgttagacatctcagtccagccatgctttcagattttcgatcacttgttcactctacgtatggtccagaagagtttgagAaaaaatgggtggagttcaaggttgttcataaagtgggcgaagacaaccaatggcttatgagaatgtacaatttgaggaagaaatgggcagctgcttatactaaaggtatgttttttctaggaatgaaaagcaaccaacgtagtgaaagtctaaactctaaactccataggtgtttggatcgtaaattcagcttggtcctattggtggagcattttgaacattgtttgtcgtgtatgagacatagggaggccgagctggattcgaaagcttcgcggtcagtcccattcacaagtaatgaagcaagtttaattgaaaaagatgccgcctgcttatttacaccttcaatattcaagaaggtgaagattgagattagtaaatcaattgattgggaagtgatagactatattgatgaggatacagtacataggtatgtcatttgcctgaaagacaatcctgacaaggttaagattttgaattgtaattatgaggactcaattttgaagacattgagttgcccatgcagaaaattggagtgcgagagccttccatgtcatcacatttttgctgtactgtttcatttgaagttggatgccattcctaaattctgcgtagagcgcaggtggactgttcaagcaaaaaatgttttcccttctgataggtatggtgaagcatatacatggtcagaccagatggaaaggtatcgtaggcttcacagcttcggttctgaagttcttttgaagtgctcgatgtccaaggaatgtactttgaaggtgatggaaatgctggaacagttggacatagaaactgaaggttgcgagcaaaaggatatagatttgaccttgcgtggtcatgttgtagctcaaagtttacgtacagacattgcttcacgggatttggtgcatgatccaatggaaattgtgcctaagggtgctcctactaaaagattgagaggattcatggagaagcgtgtcaggcgttgtggttattgccgccaagctggtcacacaattcgttgttgcccaatatacctaaggtaaaattgtatgaattatcttccattcgtctatttcattataggctattagattttgcaatcatgtctctaagttgttttgtcattcgtacaatttcaggaaagtagaagatgtgtga
More
|
||||||||||
| CDS seq | atgggcattaggctgtatcgtgtgcgctatccatctcaggttgcgccgccgcacggcaatctttttatgggtgaagatatggcagacaatttcaggacccttgaggaggaagaggagtaccgtacgattactgctatgagattcaagactgaggatgacggcttcaagttctacaataggtatgtgaaagaaaagggattcagtaaggtgaagattgagattagtaaatcaattgattgggaagtgatagactatattgatgaggatacagtacataggtatgtcatttgcctgaaagacaatcctgacaaggttaagattttgaattgtaattatgaggactcaattttgaagacattgagttgcccatgcagaaaattggagtgcgagagccttccatgtcatcacatttttgctgtactgtttcatttgaagttggatgccattcctaaattctgcgtagagcgcaggtggactgttcaagcaaaaaatgttttcccttctgataggtatggtgaagcatatacatggtcagaccagatggaaaggtatcgtaggcttcacagcttcggttctgaagttcttttgaagtgctcgatgtccaaggaatgtactttgaaggtgatggaaatgctggaacagttggacatagaaactgaaggttgcgagcaaaaggatatagatttgaccttgcgtggtcatgttgtagctcaaagtttacgtacagacattgcttcacgggatttggtgcatgatccaatggaaattgtgcctaagggtgctcctactaaaagattgagaggattcatggagaagcgtgtcaggcgttgtggttattgccgccaagctggtcacacaattcgttgttgcccaatatacctaaggaaagtagaagatgtgtga
More
|
||||||||||
| Protein seq | MGIRLYRVRYPSQVAPPHGNLFMGEDMADNFRTLEEEEEYRTITAMRFKTEDDGFKFYNRYVKEKGFSKVKIEISKSIDWEVIDYIDEDTVHRYVICLKDNPDKVKILNCNYEDSILKTLSCPCRKLECESLPCHHIFAVLFHLKLDAIPKFCVERRWTVQAKNVFPSDRYGEAYTWSDQMERYRRLHSFGSEVLLKCSMSKECTLKVMEMLEQLDIETEGCEQKDIDLTLRGHVVAQSLRTDIASRDLVHDPMEIVPKGAPTKRLRGFMEKRVRRCGYCRQAGHTIRCCPIYLRKVEDV |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0020970 | OsNaBo_12g0020970.01 | Chr12 | 25189993 | 25192775 | + | NAM | ||
| CDS seq | atgggcattaggctgtatcgtgtgcgctatccatctcaggttgcgccgccgcacggcaatctttttatgggtgaagatatggcagacaatttcaggacccttgaggaggaagaggagtaccgtacgattactgctatgagattcaagactgaggatgacggcttcaagttctacaataggtatgtgaaagaaaagggattcagtaaggtgaagattgagattagtaaatcaattgattgggaagtgatagactatattgatgaggatacagtacataggtatgtcatttgcctgaaagacaatcctgacaaggttaagattttgaattgtaattatgaggactcaattttgaagacattgagttgcccatgcagaaaattggagtgcgagagccttccatgtcatcacatttttgctgtactgtttcatttgaagttggatgccattcctaaattctgcgtagagcgcaggtggactgttcaagcaaaaaatgttttcccttctgataggtatggtgaagcatatacatggtcagaccagatggaaaggtatcgtaggcttcacagcttcggttctgaagttcttttgaagtgctcgatgtccaaggaatgtactttgaaggtgatggaaatgctggaacagttggacatagaaactgaaggttgcgagcaaaaggatatagatttgaccttgcgtggtcatgttgtagctcaaagtttacgtacagacattgcttcacgggatttggtgcatgatccaatggaaattgtgcctaagggtgctcctactaaaagattgagaggattcatggagaagcgtgtcaggcgttgtggttattgccgccaagctggtcacacaattcgttgttgcccaatatacctaaggaaagtagaagatgtgtga
More
|
|||||||
| Protein seq | MGIRLYRVRYPSQVAPPHGNLFMGEDMADNFRTLEEEEEYRTITAMRFKTEDDGFKFYNRYVKEKGFSKVKIEISKSIDWEVIDYIDEDTVHRYVICLKDNPDKVKILNCNYEDSILKTLSCPCRKLECESLPCHHIFAVLFHLKLDAIPKFCVERRWTVQAKNVFPSDRYGEAYTWSDQMERYRRLHSFGSEVLLKCSMSKECTLKVMEMLEQLDIETEGCEQKDIDLTLRGHVVAQSLRTDIASRDLVHDPMEIVPKGAPTKRLRGFMEKRVRRCGYCRQAGHTIRCCPIYLRKVEDV
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.721482 | 28.809404 | 13.199014 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0275300 | SBH | 1.242066 | 1.716914 | 5.265520 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0275300 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020330 | RBH | 1.411278 | 2.348452 | 1.763779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020430 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020760 | RBH | 2.436811 | 11.166171 | 2.953394 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021200 | RBH | 8.679755 | 0.000000 | 8.569613 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0369100 | RBH | 0 | 0.0179285 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0394900 | RBH | 7.151125 | 25.735785 | 49.6192705 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021330 | RBH | 0.739325 | 0.734068 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021560 | RBH | 0.475122 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021460 | RBH | 3.148910 | 6.365159 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0075260 | RBH | 0.000000 | 0.0 | 0.076780 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021220 | RBH | 1.888723 | 3.159424 | 7.011118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
