Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0275300 | OGI:12069410 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:9625243-9625889 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATCCTGAAGCGCCATAGCCATCCCACGGCCAAGCAGGCATCAAGGGTTACCGACCCGCTCGACCGGAAGCGCCGCCGCGGCAGGTGCACGGGCTACCGCCGGTGGACGTTGCCGCCGCCGCAGTAGGGGCACGTCGCCAACGCCGCCCCCCGCGCCCGTCGCGGCCGCCGCTGCAGGTGCTCGTCGCCCCTGCCGCCGACTCCTGTGATTTCATCGCTCTCGTAGAGGTAGACTGTTGTGATTTGACTGTGCCGATTTTTGTTTGACCGGATTTGAGTACTGAGAATGAATTGTGAAATTTTCTTTATAGGCAAACTCTTTATGGGTGAGAGGAGTATCGTACGATTACTGCTATGAGATTCAAGACTGAGGATGACGGCTTCAAGTTATAGGCTATTACATTTTGCAATCATGTCTCTAAGTTGTTTTGTCATTCCTACAATTTCAGGAAAGTAGAAGAAGATGTGTGAGATGGATAAGAAGTAGAAGCAGCCCTTTGCTATGCACTTTACATAGTTTTGTCATGCTCTTGGTCGTAATGAATACATTGGACTGTAATAAATCTTGATGTGCTTTCCTGTAGTATGATGGATGTACTACTATTTTGAGTTGTGCTCGCATGGTTGAATTTTGATGTGTTTTACTGT
More
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| CDS seq | GAGGAGTATCGTACGATTACTGCTATGAGATTCAAGACTGAGGATGACGGCTTCAAGTTATAG |
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| Protein seq | EEYRTITAMRFKTEDDGFKL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0275300 | OsNip_01t0275300-01 | Chr01 | 9625243 | 9625889 | + | RAP2018-11-26 | ||
| CDS seq | GAGGAGTATCGTACGATTACTGCTATGAGATTCAAGACTGAGGATGACGGCTTCAAGTTATAG |
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| Protein seq | EEYRTITAMRFKTEDDGFKL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.242066 | 1.716914 | 5.265520 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0275300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020330 | RBH | 1.411278 | 2.348452 | 1.763779 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020430 | RBH | 0.000000 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020760 | RBH | 2.436811 | 11.166171 | 2.953394 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0223800 | RBH | 12.839878 | 3.4689635 | 5.6136995 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_04g0027750 | SBH | 1.928935 | 1.124556 | 0.464244 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021220 | RBH | 1.888723 | 3.159424 | 7.011118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_09g0018070 | SBH | 7.711413 | 4.917150 | 1.874322 |
